TCONS_00001860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001860
Unique NameTCONS_00001860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001860 ID=TCONS_00001860|Name=TCONS_00001860|organism=Clytia hemisphaerica|type=transcript|length=1130bp
CGTCAGCTAGGTTTCAAGTCAATTTTAAGATTACTTTTACATGACTACAT
ACTTATTTTTAAATGAGGAGGACTGTCGAAGAAGTAAGATCACGTCAAAA
ATGATACTGAATAGAAATCTACTTATATAATAACCATATTCAAAATAaac
gtttttctttaaaattctgagtaaaaaaatataaaaacattttacaaGTG
GAATAGCTCTATCTCCTTTCTCACTGGATAAAATCGTCAGTGCTAACACT
CGTCTCAAAATCTCTGAGCATTATTTTCGTAATGCAAGGTCTTATTTATA
TTACAATANTTCTCACTGGATAAAATCGTCAGTGCTAACACTCGTCTCAA
AATCTCTGAGCATTATTTTCGTAATGCAAGGTCTTATTTATATTACAATA
TTGTCTTTTATTCGCTGCTCATTTATTTAACGGTCTGTGATATTGTAAAC
AGTCTTATAAACACAACACAGTCTTTATTTCAATAgtttaatttaaaaaa
cttttgaacaaAGAAAGTTTGTTGGCGTGTCTATCAGGAATGGAAATTAT
TcagattttttgaacaatttgcTTTTCTTGTGAAGTTTGTGATGTGAAAC
TTTGCTACGTTTCTTTCCCATGGTTCGAGCCATCATACCATTGGTGCAGC
AGCTAGCGCGACAGGCTGGTGCACAGGCTTGTGAACATCCTGGGAAGATT
GGACAACTTCCCATACCGAGAGGTTGTAATACGACTGGAGCTTGTTGGAT
GACGAGTTGTTGTTGTGGAATTTGAGCTTGTTGATTCTGTTGGCAACATT
GTTGTGAGCATTGTGGAGCACATGATGCTGAACATCCAGGCATCATTGGA
CAACCACCAGCCATTGGCATGGGCATCATTGGGGCTGGCATTTGGTTTTG
TTGACAACAAGAAGCTTGACAACGTGGTGCACATTGGGCGGCACAGCTTG
GGGATTGAGGACACGCGCTTTGCATGGGCATCATTGGGGCGGCCATCATT
GGTGGTGGCATCATCATTCCTTGTTGTTGTTGACAACAAGATGCTTGACA
ACGTGGTGCACATTGGGCAGCACATCCAGGGAACTGTGGGCATCCGCCGG
CCATTGGCATAGGTGGAGCCATCATTTGGG
Run BLAST on NCBI

transcript from alignment at sc0000012:1020638..1021884+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001860 ID=TCONS_00001860|Name=TCONS_00001860|organism=Clytia hemisphaerica|type=transcript|length=1247bp|location=Sequence derived from alignment at sc0000012:1020638..1021884+ (Clytia hemisphaerica)
CGTCAGCTAGGTTTCAAGTCAATTTTAAGATTACTTTTACATGACTACAT
ACTTATTTTTAAATGAGGAGGACTGTCGAAGAAGTAAGATCACGTCAAAA
ATGATACTGAATAGAAATCTACTTATATAATAACCATATTCAAAATAaac
gtttttctttaaaattctgagtaaaaaaatataaaaacattttacaaGTG
GAATAGCTCTATCTCCTTTCTCACTGGATAAAATCGTCAGTGCTAACACT
CGTCTCAAAATCTCTGAGCATTATTTTCGTAATGCAAGGTCTTATTTATA
TTACAATANTTCTCACTGGATAAAATCGTCAGTGCTAACACTCGTCTCAA
AATCTCTGAGCATTATTTTCGTAATGCAAGGTCTTATTTATATTACAATA
TTGTCTTTTATTCGCTGCTCATTTATTTAACGGTCTGTGATATTGTAAAC
AGTCTTATAAACACAACACAGTCTTTATTTCAATAgtttaatttaaaaaa
cttttgaacaaAGAAAGTTTGTTGGCGTGTCTATCAGGAATGGAAATTAT
TcagattttttgaacaatttgcTTTTCTTGTGAAGTTTGTGATGTGAAAC
TTTGCTACGTTTCTTTCCCATGGTTCGAGCCATCATACCATTGGTGCAGC
AGCTAGCGCGACAGGCTGGTGCACAGGCTTGTGAACATCCTGGGAAGATT
GGACAACTTCCCATACCGAGAGGTTGTAATACGACTGGAGCTTGTTGGAT
GACGAGTTGTTGTTGTGGAATTTGAGCTTGTTGATTCTGTTGGCAACATT
GTTGTGAGCATTGTGGAGCACATGATGCTGAACATCCAGGCATCATTGGA
CAACCACCAGCCATTGGCATGGGCATCATTGGGGCTGGCATTTGGTTTTG
TTGACAACAAGAAGCTTGACAACGTGGTGCACATTGGGCGGCACAGCTTG
GGGATTGAGGACACGCGCTTTGCATGGGCATCATTGGGGCGGCCATCATT
GGTGGTGGCATCATCATTCCTTGTTGTTGTTGACAACAAGATGCTTGACA
ACGTGGTGCACATTGGGCACCGCAACCGGGGAATTGTGGGCAAGCACTTT
GCATTGGAGCGGCCATCATTGGTGGCATCATCATTCCTTGTTGTTGTTGG
CAACATGATGCTTGGCAACGTGGGGCACATTGGGCAGCACATCCAGGGAA
CTGTGGGCATCCGCCGGCCATTGGCATAGGTGGAGCCATCATTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000981XLOC_000981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001860-exon-sc0000012-1491911889:1020638..1021698TCONS_00001860-exon-sc0000012-1491911889:1020638..1021698Clytia hemisphaericaexon
TCONS_00001860-exon-sc0000012-1510915933:1020638..1021698TCONS_00001860-exon-sc0000012-1510915933:1020638..1021698Clytia hemisphaericaexon
TCONS_00001860-exon-sc0000012-1575043694:1020638..1021698TCONS_00001860-exon-sc0000012-1575043694:1020638..1021698Clytia hemisphaericaexon
TCONS_00001860-exon-sc0000012-1491911889:1021816..1021884TCONS_00001860-exon-sc0000012-1491911889:1021816..1021884Clytia hemisphaericaexon
TCONS_00001860-exon-sc0000012-1510915933:1021816..1021884TCONS_00001860-exon-sc0000012-1510915933:1021816..1021884Clytia hemisphaericaexon
TCONS_00001860-exon-sc0000012-1575043694:1021816..1021884TCONS_00001860-exon-sc0000012-1575043694:1021816..1021884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:1020638..1021884 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279182	0.203702	0.00359905	0	0.980066	0.417289	12.5125	10.6827	6.10229	3.02605	12.5264	4.83529	10.1581	6.23492	7.77555	18.4622	3.61185	11.1302	0.338997	0.764241	22.7067	37.475	29.0175	25.0745	0.450979	0.00512756	2.90042	1.81904	0.895222	0.322898
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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