TCONS_00001846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001846
Unique NameTCONS_00001846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001846 ID=TCONS_00001846|Name=TCONS_00001846|organism=Clytia hemisphaerica|type=transcript|length=1448bp
ATTTTTCCCAAATGTTTCTACAAACGATGTAtggaagaaaacattttcat
taTATTTCATTTCAACCCATCGAAACATACAAAGGACGGCTTTATTACGT
ACAAGGCAAAGGGAAGATTGTGCCATGCGTGAGAGACTGTTGTCACTAGA
GCAGAGCTTTATTCTTGTTCCATTGTTATTGATGATACCTCCTGTAACAC
CTTTCGATATAGTTAATGAAGTCCAACCATCAGGTAATACCGATATTGGT
AATCTGACACTCCAGCAACTTTGCCAATTCATTCTTCATTACAATGAATC
TATGTGTAACTGTCAAATCCTGGAAGAAATATGTTTAATCTATAACTATA
CTGATCACTGGCGATCTAAGGAAAAGGTCATTTACAAGTTCGAAGATTGT
GATGAAATAACTCAAGCAACTTTGGTGATCTCAATGTCCATTTTTGGTAC
CTTTGGCAATCTTTTGGTGGTTATTATAACATACCATAACTGGAAACAAA
GCTCTTTATGTCATAAACTGATCGGTGGTTTAGGAATATGCGATCTGGCC
TTCGCACTAATGGACTTGATTCAGACAGTGCCTTTACTTTGGACTTGTAG
TGCTTTCTACGGTGAAATAATGTGCAAGTTCTTCGCATTTGCCAACAATA
CAGTGGCTATGATTGGTCTTGGTTTCATATTGATCGTAGCTATCGAGAGA
TATGTTGGTATATGTTATCCTTTCACAAGAGGACTTTCAACCAAAGCTGT
TCTACTCATGATCATTGCAAATGTATTACTAGGTGTTGTTTTGAATATAC
CGCTAGCGATCATTTACAAAGTTGACGAGTTCAATCGTTGCAGAGAATTC
TGGTCGTCTCGTCTCCGTGCTAAAGTTTACTCTTGGCTCATGTTGATGCT
TTCTTTTGTCCTTCCTATCACGGCTATCGCATTAATGTACTATCGAATTA
TTTACACAATGAGAAGATCAATGAAGCAATATCGGAATGTCTCGATCAAG
GATAAACCAACCATGAGGCGTAACAAAGAACAACAGCGAGTAATGTTTAT
TCTTATAGCGATATTAATTGCGTTTTTCCTGCTGGTGGCACCCGATAAAT
TCATATGGGCGTTAAAGGATCAAGGATTCCTGGAAAACCTAACCAATCAa
atgttgaatattttgaatcTGTGCGCAAGAATTCCGTTTTCTTTCCATGT
GGTGATAAACCCACTTATTTATTCAGTTATCGATCGAAAGTTTCgtgaat
ctttaaaaaacttattaTCATGCCGAGACTATCATCGGAGTGAACCGGGT
GGTAAGAATAAGAGAGATTCGGTAAATGTCACTGGTAAAGATGGATCAAT
GAACAGTGACGAAAAAGATTGCGCAGTTTGAACTCTTTATATGTTTGTAT
TATAGGTCGGTTTGTATATTTTAGAATGAAAACGACAAAAGACATCAG
Run BLAST on NCBI

protein sequence of TCONS_00001846-protein

>TCONS_00001846-protein ID=TCONS_00001846-protein|Name=TCONS_00001846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
FFPNVSTNDVWKKTFSLYFISTHRNIQRTALLRTRQREDCAMRERLLSLE
QSFILVPLLLMIPPVTPFDIVNEVQPSGNTDIGNLTLQQLCQFILHYNES
MCNCQILEEICLIYNYTDHWRSKEKVIYKFEDCDEITQATLVISMSIFGT
FGNLLVVIITYHNWKQSSLCHKLIGGLGICDLAFALMDLIQTVPLLWTCS
AFYGEIMCKFFAFANNTVAMIGLGFILIVAIERYVGICYPFTRGLSTKAV
LLMIIANVLLGVVLNIPLAIIYKVDEFNRCREFWSSRLRAKVYSWLMLML
SFVLPITAIALMYYRIIYTMRRSMKQYRNVSIKDKPTMRRNKEQQRVMFI
LIAILIAFFLLVAPDKFIWALKDQGFLENLTNQMLNILNLCARIPFSFHV
VINPLIYSVIDRKFRESLKNLLSCRDYHRSEPGGKNKRDSVNVTGKDGSM
NSDEKDCAV
Run BLAST on NCBI

transcript from alignment at sc0000012:907022..909031+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001846 ID=TCONS_00001846|Name=TCONS_00001846|organism=Clytia hemisphaerica|type=transcript|length=2010bp|location=Sequence derived from alignment at sc0000012:907022..909031+ (Clytia hemisphaerica)
ATTTTTCCCAAATGTTTCTACAAACGATGTAtggaagaaaacattttcat
taTATTTCATTTCAACCCATCGAAACATACAAAGGACGGCTTTATTACGT
ACAAGGCAAAGGGAAGGTTAGAAATGAATTGTTCATGAAAAGCCAACAAG
GACTTGTTATCTGATTAGCATCCATCTTTTATCGATGAAAATGTTGAGTC
CTTTTTCTCAGACCACAATCATTGAATCTTACCATGGTCAGAATATGTTG
GTATTTCTTGGTGCTTTTGTGTTTTGCAGAATCTAAAGTTTGGGAGAGAa
tgacattttcaggctttcCACTTCATCATAtgtttcgatttgggagggga
ataatggcttccaggctatattctcagcctagtCAGACCAGGATCCTCAG
ATCCCAAGCTCTCAAATCTTATCGTTATAAAACTCAAAGTTGAAACTCTA
CTTTTCCAACCCTAAGTTAATGCACATAAAAACTGCTTGCGGCGGGACTT
gcggttttttaaattttacagcgaaatcctttttttgccaaatattaTGC
TCATAATAGTTGTAGTTCATGCTTAAGTATTATAAACATTAGTTCAGCCT
CGTGATAAGCTTACATGAGTCTGAATTTATACCTCAGAGAAATTGGATAA
TAtctcttttttcaaattcactttTCAGATTGTGCCATGCGTGAGAGACT
GTTGTCACTAGAGCAGAGCTTTATTCTTGTTCCATTGTTATTGATGATAC
CTCCTGTAACACCTTTCGATATAGTTAATGAAGTCCAACCATCAGGTAAT
ACCGATATTGGTAATCTGACACTCCAGCAACTTTGCCAATTCATTCTTCA
TTACAATGAATCTATGTGTAACTGTCAAATCCTGGAAGAAATATGTTTAA
TCTATAACTATACTGATCACTGGCGATCTAAGGAAAAGGTCATTTACAAG
TTCGAAGATTGTGATGAAATAACTCAAGCAACTTTGGTGATCTCAATGTC
CATTTTTGGTACCTTTGGCAATCTTTTGGTGGTTATTATAACATACCATA
ACTGGAAACAAAGCTCTTTATGTCATAAACTGATCGGTGGTTTAGGAATA
TGCGATCTGGCCTTCGCACTAATGGACTTGATTCAGACAGTGCCTTTACT
TTGGACTTGTAGTGCTTTCTACGGTGAAATAATGTGCAAGTTCTTCGCAT
TTGCCAACAATACAGTGGCTATGATTGGTCTTGGTTTCATATTGATCGTA
GCTATCGAGAGATATGTTGGTATATGTTATCCTTTCACAAGAGGACTTTC
AACCAAAGCTGTTCTACTCATGATCATTGCAAATGTATTACTAGGTGTTG
TTTTGAATATACCGCTAGCGATCATTTACAAAGTTGACGAGTTCAATCGT
TGCAGAGAATTCTGGTCGTCTCGTCTCCGTGCTAAAGTTTACTCTTGGCT
CATGTTGATGCTTTCTTTTGTCCTTCCTATCACGGCTATCGCATTAATGT
ACTATCGAATTATTTACACAATGAGAAGATCAATGAAGCAATATCGGAAT
GTCTCGATCAAGGATAAACCAACCATGAGGCGTAACAAAGAACAACAGCG
AGTAATGTTTATTCTTATAGCGATATTAATTGCGTTTTTCCTGCTGGTGG
CACCCGATAAATTCATATGGGCGTTAAAGGATCAAGGATTCCTGGAAAAC
CTAACCAATCAaatgttgaatattttgaatcTGTGCGCAAGAATTCCGTT
TTCTTTCCATGTGGTGATAAACCCACTTATTTATTCAGTTATCGATCGAA
AGTTTCgtgaatctttaaaaaacttattaTCATGCCGAGACTATCATCGG
AGTGAACCGGGTGGTAAGAATAAGAGAGATTCGGTAAATGTCACTGGTAA
AGATGGATCAATGAACAGTGACGAAAAAGATTGCGCAGTTTGAACTCTTT
ATATGTTTGTATTATAGGTCGGTTTGTATATTTTAGAATGAAAACGACAA
AAGACATCAG

Coding sequence (CDS) from alignment at sc0000012:907022..909031+

>TCONS_00001846 ID=TCONS_00001846|Name=TCONS_00001846|organism=Clytia hemisphaerica|type=CDS|length=2760bp|location=Sequence derived from alignment at sc0000012:907022..909031+ (Clytia hemisphaerica)
TTTTTCCCAAATGTTTCTACAAACGATGTAtggaagaaaacattttcatt
aTATTTCATTTCAACCCATCGAAACATACAAAGGACGGCTTTATTACGTA
CAAGGCAAAGGGAAGATTGTGCCATGCGTGAGAGACTGTTGTCACTAGAG
CAGAGCTTTATTCTTGTTCCATTGTTATTGATGATACCTCCTGTAACACC
TTTCGATATAGTTAATGAAGTCCAACCATCAGGTAATACCGATATTGGTA
ATCTGACACTCCAGCAACTTTGCCAATTCATTCTTCATTACAATGAATCT
ATGTGTAACTGTCAAATCCTGGAAGAAATATGTTTAATCTATAACTATAC
TGATCACTGGCGATCTAAGGAAAAGGTCATTTACAAGTTCGAAGATTGTG
ATGAAATAACTCAAGCAACTTTGGTGATCTCAATGTCCATTTTTGGTACC
TTTGGCAATCTTTTGGTGGTTATTATAACATACCATAACTGGAAACAAAG
CTCTTTATGTCATAAACTGATCGGTGGTTTAGGAATATGCGATCTGGCCT
TCGCACTAATGGACTTGATTCAGACAGTGCCTTTACTTTGGACTTGTAGT
GCTTTCTACGGTGAAATAATGTGCAAGTTCTTCGCATTTGCCAACAATAC
AGTGGCTATGATTGGTCTTGGTTTCATATTGATCGTAGCTATCGAGAGAT
ATGTTGGTATATGTTATCCTTTCACAAGAGGACTTTCAACCAAAGCTGTT
CTACTCATGATCATTGCAAATGTATTACTAGGTGTTGTTTTGAATATACC
GCTAGCGATCATTTACAAAGTTGACGAGTTCAATCGTTGCAGAGAATTCT
GGTCGTCTCGTCTCCGTGCTAAAGTTTACTCTTGGCTCATGTTGATGCTT
TCTTTTGTCCTTCCTATCACGGCTATCGCATTAATGTACTATCGAATTAT
TTACACAATGAGAAGATCAATGAAGCAATATCGGAATGTCTCGATCAAGG
ATAAACCAACCATGAGGCGTAACAAAGAACAACAGCGAGTAATGTTTATT
CTTATAGCGATATTAATTGCGTTTTTCCTGCTGGTGGCACCCGATAAATT
CATATGGGCGTTAAAGGATCAAGGATTCCTGGAAAACCTAACCAATCAaa
tgttgaatattttgaatcTGTGCGCAAGAATTCCGTTTTCTTTCCATGTG
GTGATAAACCCACTTATTTATTCAGTTATCGATCGAAAGTTTCgtgaatc
tttaaaaaacttattaTCATGCCGAGACTATCATCGGAGTGAACCGGGTG
GTAAGAATAAGAGAGATTCGGTAAATGTCACTGGTAAAGATGGATCAATG
AACAGTGACGAAAAAGATTGCGCAGTTTGATTTTTCCCAAATGTTTCTAC
AAACGATGTAtggaagaaaacattttcattaTATTTCATTTCAACCCATC
GAAACATACAAAGGACGGCTTTATTACGTACAAGGCAAAGGGAAGATTGT
GCCATGCGTGAGAGACTGTTGTCACTAGAGCAGAGCTTTATTCTTGTTCC
ATTGTTATTGATGATACCTCCTGTAACACCTTTCGATATAGTTAATGAAG
TCCAACCATCAGGTAATACCGATATTGGTAATCTGACACTCCAGCAACTT
TGCCAATTCATTCTTCATTACAATGAATCTATGTGTAACTGTCAAATCCT
GGAAGAAATATGTTTAATCTATAACTATACTGATCACTGGCGATCTAAGG
AAAAGGTCATTTACAAGTTCGAAGATTGTGATGAAATAACTCAAGCAACT
TTGGTGATCTCAATGTCCATTTTTGGTACCTTTGGCAATCTTTTGGTGGT
TATTATAACATACCATAACTGGAAACAAAGCTCTTTATGTCATAAACTGA
TCGGTGGTTTAGGAATATGCGATCTGGCCTTCGCACTAATGGACTTGATT
CAGACAGTGCCTTTACTTTGGACTTGTAGTGCTTTCTACGGTGAAATAAT
GTGCAAGTTCTTCGCATTTGCCAACAATACAGTGGCTATGATTGGTCTTG
GTTTCATATTGATCGTAGCTATCGAGAGATATGTTGGTATATGTTATCCT
TTCACAAGAGGACTTTCAACCAAAGCTGTTCTACTCATGATCATTGCAAA
TGTATTACTAGGTGTTGTTTTGAATATACCGCTAGCGATCATTTACAAAG
TTGACGAGTTCAATCGTTGCAGAGAATTCTGGTCGTCTCGTCTCCGTGCT
AAAGTTTACTCTTGGCTCATGTTGATGCTTTCTTTTGTCCTTCCTATCAC
GGCTATCGCATTAATGTACTATCGAATTATTTACACAATGAGAAGATCAA
TGAAGCAATATCGGAATGTCTCGATCAAGGATAAACCAACCATGAGGCGT
AACAAAGAACAACAGCGAGTAATGTTTATTCTTATAGCGATATTAATTGC
GTTTTTCCTGCTGGTGGCACCCGATAAATTCATATGGGCGTTAAAGGATC
AAGGATTCCTGGAAAACCTAACCAATCAaatgttgaatattttgaatcTG
TGCGCAAGAATTCCGTTTTCTTTCCATGTGGTGATAAACCCACTTATTTA
TTCAGTTATCGATCGAAAGTTTCgtgaatctttaaaaaacttattaTCAT
GCCGAGACTATCATCGGAGTGAACCGGGTGGTAAGAATAAGAGAGATTCG
GTAAATGTCACTGGTAAAGATGGATCAATGAACAGTGACGAAAAAGATTG
CGCAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000974XLOC_000974Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001846-proteinTCONS_00001846-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001846-exon-sc0000012-1491911889:907022..907137TCONS_00001846-exon-sc0000012-1491911889:907022..907137Clytia hemisphaericaexon
TCONS_00001846-exon-sc0000012-1510915933:907022..907137TCONS_00001846-exon-sc0000012-1510915933:907022..907137Clytia hemisphaericaexon
TCONS_00001846-exon-sc0000012-1575043694:907022..907137TCONS_00001846-exon-sc0000012-1575043694:907022..907137Clytia hemisphaericaexon
TCONS_00001846-exon-sc0000012-1491911889:907700..909031TCONS_00001846-exon-sc0000012-1491911889:907700..909031Clytia hemisphaericaexon
TCONS_00001846-exon-sc0000012-1510915933:907700..909031TCONS_00001846-exon-sc0000012-1510915933:907700..909031Clytia hemisphaericaexon
TCONS_00001846-exon-sc0000012-1575043694:907700..909031TCONS_00001846-exon-sc0000012-1575043694:907700..909031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:907022..909031 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.294939	1.10752	0	0	0	0	3.28266	0.986615	0	1.0533	0	0	2.82838	1.69976	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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