TCONS_00001836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001836
Unique NameTCONS_00001836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001836 ID=TCONS_00001836|Name=TCONS_00001836|organism=Clytia hemisphaerica|type=transcript|length=1229bp
CAAGTCAGACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGG
ATGGGGCggtttccacccaggacatacTGGTGGAGGTTGGGGTGCTCCTT
ACTGGTACAAAAAACGAACTCACACTCCACAAGTCAGACAATTAGTACCA
ACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttccacccagg
acatacTGGCGGAGGTTGGGGTGCTCCTTATTGGTATAAGAAAAGCGATA
CGAAGAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTTCCAACACAT
TATTATGGCCCACCAAGTGCAGGATGGGGTggtttccacccaggacatac
TGGCGGAGGTTGGGGTTCCCCTTATTGGTACAAaaaagacGATGTATCAC
CAAAGCAGCTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGG
GGCGGTTTCCACCCAGGACACACTGGTGGAGGTTGGGGTGCTCCTTATTG
GTATAAAAAACGAACTCACACTCCACAAGTTAGACAATTAGTACCAACAC
ACTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCAGCCAGGACAT
ACTGGTGGAGGTTGGGGTGCTCCTTATTGGTACAAAAAAAGCGAGACAAA
GAATCCAGGAAAAACTCACTCTACAAAACAATTAGTACCAACGCATTATT
ATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATACTGGT
GGAGGATGGGGCGCTCCTTATTGGTACAAaaaaagtgaGACCAAGAATCC
AGGAAAAACACACTCTACAAAACAATTAGTACCAACACATTATTATGGTC
CACCAAGTGCAGGATGGGGTggtttccacccaggacatacTGGCGGTGGA
TGGGGCGCTCCTTATTGGTATAAAAAAAGCGAAACGAAGAATCCTGAAAA
GACTCACTCTGCAAAACAATTAGTACCAACACATTATTATGGTCCACCAA
GTGCAGGATGGGGTGGTTTCCATCCAGGACATACTGGCGGAGGATGGGGC
GCTCCTTATTGGTATAAGAGATCAGGAATTGTTCGTTCCACCCATACTGA
GAATGTTGTTACATCACCATCAAAGAAATACATGGTAGAAGGATACAACA
ATCTTGGTATAGGACATATTGGTAAAGATGAAGGAGGCTGGGACCATGGC
TTTGGTGCTGGTCATGGCTTCGCGTGGGG
Run BLAST on NCBI

transcript from alignment at sc0000012:791736..796664+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001836 ID=TCONS_00001836|Name=TCONS_00001836|organism=Clytia hemisphaerica|type=transcript|length=4929bp|location=Sequence derived from alignment at sc0000012:791736..796664+ (Clytia hemisphaerica)
CAAGTCAGACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGG
ATGGGGCggtttccacccaggacatacTGGTGGAGGTTGGGGTGCTCCTT
ACTGGTACAAGTAAGTCCTCCATTTACTCtaacaaaatcaataaacacCG
TCACTCTAATACTGTTCAGTTTCATTACTGTTGAAAAATATTACCCCTTA
CTATTACTATTTAGTAATGGTAATGGAAATAAATTCCCTTAGAGCTCAAA
TttatttcaacaaaaatcaTTGATAATCATTAACTGATAAACCATCTTTA
GAGATCTTCCCCTTGGCGTGAAACGAATTTTTCGAAGGAATCTTCTTGTT
GTGATCTATTGAGTATTGTTGGGATAGATTGGcaaatttttgaagaatat
ttttcataaaattgattttctgcCTTATAGAAAACGAACTCACACTCCAC
AAGTCAGACAATTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGA
TGGGGTGGTTTCCAGCCAGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCAGGACATACTGGTGGAGGTTGGGGTGCTCCTTACTGGTACAAGTA
AGTCCTCCATTTACTCttacaaaatcaataaacacCGTCACTCTAATACT
GTTCAGTTTCATTACTGTTGAAAAATATTACCCCTTACTATTACTATTTA
GTAATGGTAATGGAAATAAATTCCCTTAGAGCTCAAATttatttcaacaa
aaatcaTTGATAATCATTAACTGATAAACAACCATCTTTAGAGATCTTCC
CCTTGACGTGAAACGAATTTTTCGAAGGAATCTTCTTGTTGTATCTATTG
AGCATTGTTGGGATAGATTGGcaaatttttgaagaatattttttataaaa
ttgattttctgcCTTATAGAAAACGAACTCACACTCCACAAGTCAGACAA
TTAGTACCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggttt
ccacccaggacatacTGGCGGAGGTTGGGGTGCTCCTTATTGGTATAAGT
AAGATAATATCTATGATAAAATAAGGAATGTTCAACTTCAATTGCTTTCC
AAAGCTAACAACGTCTTGTTTTGTGCGTCAGAACTATGGGTTGTTCCTAA
TCGTTTCAGTTACTCCGACGTCCTCAAAATAGTAGAATAATAAACTTGGT
ATAGTTTCTCGTAGTAAATGATGAAATAGATTCACCGGCTACAATAGAAT
AAAGCGTACTTGAGTGCATCTATTTTGAGTTACTTTCATTATTATGTACA
CTTTTAGGAAAAGCGATACGAAGAATCCTGAAAAGACTCACTCTGCAAAA
CAATTAGTTCCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTgg
tttccacccaggacatacTGGCGGAGGTTGGGGTTCCCCTTATTGGTACA
AGTAAGTTAATATTTGTGAtgtaaagcaaaaaaaagtttaactttCGCTG
CTATCAAAAGCTAACAAAGTCTTGTTTGGAAGCTGAAACGATACTAATAT
TTTAGATACGGCCTACGAGGTTTCGGTGTTGCAGAAATCAATCGTTTTTA
CTCGGAATTCGGGTAATATTACGGAATCCTAAAATTGGTTCGGTATCTGA
AATAGACGTATTTGTACGTCAAAATCTGGGTGATGAAAAGATTACATTCT
TGAATTTCGGAATTTTTGCAAGATggctcaaaaacaaaatttttcggttt
ttcgaaaatcagaaCCCTCGTACGCCCCGCCCCCTATACTACACTAAGAA
GTATTTCCAgagattttgacattttagaaAATAGATTTAAGTACTAGAGA
CGCCTACCCATTACGTCCTATGTATGGTCGATTGAGATTTCTTAAGCATT
TTCCAATTGCTTATATcccatttttttagaaaagacGATGTATCACCAAA
GCAGCTAGTACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGCG
GTTTCCACCCAGGACACACTGGTGGAGGTTGGGGTGCTCCTTATTGGTAT
AAGTAAGTTTGAACGAACATACTTTGATTTCCTCGGCTATTTCGATGTTT
AAACTTGCGCACAGCTTTCTTGAAGAATCCTCTAAACATGTTAGAGCTTT
TGCATATACTGGTAATGTGAGGAAAAGCATTGCCAAAATAATGCAATGCT
TTAATAAAATACGATTGGGAGATATTCTCTTTATATCTTTAGGTTATAAT
GTTTTTCTATTCGAGTTGTAGCACTGAACTAAAGTTGGCAACACTATTCT
GAATTATAATGGGAACTATATTATTTTACTTAAACCAACAGAAAACGAAC
TCACACTCCACAAGTTAGACAATTAGTACCAACACACTATTATGGTCCAC
CAAGTGCAGGATGGGGTGGTTTCCAGCCAGGACATACTGGTGGAGGTTGG
GGTGCTCCTTATTGGTACAAGTAAGTTGTTTAGATTTCAAAGGCGTAGTC
AGATAGTTTGAGATATTTGGTCTTTAGATTCCTCTTAATATTTCTGAGCA
AACTTTTTTGTAAGCAATAGATCTCTCAACGTGGAAACCCTGTGTGAACC
CATCTTCAACGTTTTCAAAACatcgtttttcaaacttacaaAATCATTTT
AGCAAAAAGAATTGGGGGTTTACCgccaaactaaaaaaaatatacAGACC
AAAAGTCTTTTACCGTCTGGTAAGCCCTTCTAAAAAGGATCTACAAATGG
CTAATAGACCTTTGTTGCCTTTATCATAAAAGTCTAATATCAAAGTTTCA
AGTCTAATATTTACCGTTGTTTTCATATAAATAGAAAAAGCGAAACGAAA
AATCCTGAAAAGACTCACTCTGCAAAACAATTAGTGCCAACGCATTATTA
TGGTCCACCAAGTGCGGGATGGGGTggtttccacccaggacatacTGGCG
GAGGATGGGGTGCTCCTTATTGGTACAAGTAAGTTGAACATTTTGATCAT
CTTTGCATGGTAACCCAAATCAAAGTTACTGCAAACATAGTTACCTAAAA
GCTTCCTTTTCGAAGATTTTGACTTACTTGTGGCTCGTTCGCCTACCTTT
TGTCAGGTAGTAGTTCATTTATCTACTGTATTTTCAAGTGGTCGTTGTAA
TTCGTGTCTTCACTTCGTCATTTGTCTTTACAGAAAAAGCGAGACAAAGA
ATCCAGGAAAAACTCACTCTACAAAACAATTAGTACCAACGCATTATTAT
GGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATACTGGTGG
AGGATGGGGCGCTCCTTATTGGTACAAGTAAGTATACTGATACCTTTTGG
TAGCCATTTACGACAATGATGACGAAAATGTTTTCAGTCTCGTCAAAATT
TGCCATTTCTTAGAAAGTGATGAGAAACTCATGTATCTAGTGATGTAGTA
TATAAGCTCAAGTAGACTGATCTGTATTAAGGAATAAGAATTATAATTAT
TTTGAAAGAGGATTTGccacaatacacctttccccttgatttcaattaaa
aacgtttatattttttaccattttaattttttcagaaaaagtgaGACCAA
GAATCCAGGAAAAACACACTCTACAAAACAATTAGTACCAACACATTATT
ATGGTCCACCAAGTGCAGGATGGGGTggtttccacccaggacatacTGGC
GGTGGATGGGGCGCTCCTTATTGGTATAAGTaagtcaattttaaaagtta
ttttttgtgttttagcGATCCTTAGCAAGCTTAAGTATCGATAgataaat
cacgacgacggaagTTTTTCCTCTATCCTTGTTCATTAACGCTGCGGATT
TTTTCTTCAGGCTAACCTGAAAGCAAGGTAGATTTGCCCCGTGTAGTACA
TACAGTACATACAAGCGGAGCTTCATTGTATAAACAATAACATAAGTTGA
TTTCTTTGAATGGTAAGTCTAAGTTATGCTCTCAGGTTAGCCTGTAGAAA
AGTTCCGCAGCGCGAAAGAACAAGGCTAATGGAAAtccgtccgtcgtcgt
gattcaTCTATCGTTATTTAACCTCATTGTTGtgctcaaataaaaaaaga
aggtCAGCTTCCATATAAAAGCTCGTTATCATATTTTAGTTTCAGTACAA
TAGTTTTCTGTACAAGGTTGACTTGAACCTGCTTTGGAATATTACACACT
AGAGTCCGTCGTACAGGCTAACTATCTTTGTCATGGTAATAAGTTATAAC
TAGTCCTCCTTTACCTTACCTCAGAAAAAGCGAAACGAAGAATCCTGAAA
AGACTCACTCTGCAAAACAATTAGTACCAACACATTATTATGGTCCACCA
AGTGCAGGATGGGGTGGTTTCCATCCAGGACATACTGGCGGAGGATGGGG
CGCTCCTTATTGGTATAAGTAAGTGATTTATACCTAGTTTAgtgtatttt
tgtaaatttgaaaatttgttagaataaattcttaaaaaaataatcacttt
gtattattaattttgttgtGTCCCTTATAAATTACAATTTATACAATTAT
GCTTTTTTCATCATTAACAAACTCGAAATCACCTTGACCTTTATACTGCT
GATCTTCTAACAGGTGCTAAAAGTTTCTAACCAAACAAAATCACAGATAA
GCACCATACTTTTATAGGAGATCAGGAATTGTTCGTTCCACCCATACTGA
GAATGTTGTTACATCACCATCAAAGAAATACATGGTAGAAGGATACAACA
ATCTTGGTATAGGACATATTGGTAAAGATGAAGGAGGCTGGGACCATGGC
TTTGGTGCTGGTCATGGCTTCGCGTGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000971XLOC_000971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001836-exon-sc0000012-1491911889:791736..791845TCONS_00001836-exon-sc0000012-1491911889:791736..791845Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1510915933:791736..791845TCONS_00001836-exon-sc0000012-1510915933:791736..791845Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1575043694:791736..791845TCONS_00001836-exon-sc0000012-1575043694:791736..791845Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1491911889:792755..792883TCONS_00001836-exon-sc0000012-1491911889:792755..792883Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1510915933:792755..792883TCONS_00001836-exon-sc0000012-1510915933:792755..792883Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1575043694:792755..792883TCONS_00001836-exon-sc0000012-1575043694:792755..792883Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1491911889:793143..793286TCONS_00001836-exon-sc0000012-1491911889:793143..793286Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1510915933:793143..793286TCONS_00001836-exon-sc0000012-1510915933:793143..793286Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1575043694:793143..793286TCONS_00001836-exon-sc0000012-1575043694:793143..793286Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1491911889:793765..793887TCONS_00001836-exon-sc0000012-1491911889:793765..793887Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1510915933:793765..793887TCONS_00001836-exon-sc0000012-1510915933:793765..793887Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1575043694:793765..793887TCONS_00001836-exon-sc0000012-1575043694:793765..793887Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1491911889:794177..794305TCONS_00001836-exon-sc0000012-1491911889:794177..794305Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1510915933:794177..794305TCONS_00001836-exon-sc0000012-1510915933:794177..794305Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1575043694:794177..794305TCONS_00001836-exon-sc0000012-1575043694:794177..794305Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1491911889:795019..795162TCONS_00001836-exon-sc0000012-1491911889:795019..795162Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1510915933:795019..795162TCONS_00001836-exon-sc0000012-1510915933:795019..795162Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1575043694:795019..795162TCONS_00001836-exon-sc0000012-1575043694:795019..795162Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1491911889:795421..795564TCONS_00001836-exon-sc0000012-1491911889:795421..795564Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1510915933:795421..795564TCONS_00001836-exon-sc0000012-1510915933:795421..795564Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1575043694:795421..795564TCONS_00001836-exon-sc0000012-1575043694:795421..795564Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1491911889:796110..796253TCONS_00001836-exon-sc0000012-1491911889:796110..796253Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1510915933:796110..796253TCONS_00001836-exon-sc0000012-1510915933:796110..796253Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1575043694:796110..796253TCONS_00001836-exon-sc0000012-1575043694:796110..796253Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1491911889:796503..796664TCONS_00001836-exon-sc0000012-1491911889:796503..796664Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1510915933:796503..796664TCONS_00001836-exon-sc0000012-1510915933:796503..796664Clytia hemisphaericaexon
TCONS_00001836-exon-sc0000012-1575043694:796503..796664TCONS_00001836-exon-sc0000012-1575043694:796503..796664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:791736..796664 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.160275	0	0	0	0.247509	0	0	0	0	1.94309	3.06862	0.746651	5.15012	0.00752004	1.9593	5.55766e-09	0.64317	0	0	1.35581e-07	1.57847e-07	0	1.91903e-07	0	0	0	0.00836476	0.106028	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top