TCONS_00001831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001831
Unique NameTCONS_00001831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001831 ID=TCONS_00001831|Name=TCONS_00001831|organism=Clytia hemisphaerica|type=transcript|length=1550bp
GAGCACCAGAGCCGCCATGTGCACCACCACCAACAGAAGCTAAAGAAGAT
AAACCTCCCACAGAAGCTAAAGACGATGGAGATAAACCTCCACCGAAGAA
ACCGGCAACAAAGAAAGTTGACATCGAAGCTTTAGAAGACGCCGAAACTC
CAAAGTCGAGACATAGACGACAATTAGTACCAACACATTATTATGGTCCA
CCAAGTGCAGGATGGGGTggtttccacccaggacatacTGGCGGTGGTTG
GGGTGCTCCTTATTGGTACAAAAAACGAACTCACACTCCACAAGTCAGAC
AATTAGTACCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggt
ttccacccaggacatacTGGCGGAGGTTGGGGTGCTCCTTATTGGTATAA
GAAAAGCGATACGAAGAATCCTGAAAAGACTCACTCTGCAAAACAATTAG
TTCCAACACATTATTATGGCCCACCAAGTGCAGGATGGGGTggtttccac
ccaggacatacTGGCGGAGGTTGGGGTTCCCCTTATTGGTACAAaaaaga
cGATGTATCACCAAAGCAGCTAGTACCAACACATTATTATGGTCCACCAA
GTGCAGGATGGGGCGGTTTCCACCCAGGACACACTGGTGGAGGTTGGGGT
GCTCCTTATTGGTATAAAAAACGAACTCACACTCCACAAGTTAGACAATT
AGTACCAACACACTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCC
AGCCAGGACATACTGGTGGAGGTTGGGGTGCTCCTTATTGGTACAAAAAA
AGCGAGACAAAGAATCCAGGAAAAACTCACTCTACAAAACAATTAGTACC
AACGCATTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAG
GACATACTGGCGGAGGATGGGGCGCTCCTTATTGGTATAAGAGATCAGGA
ATTGTTCGTTCCACCCATACTGAGAATGTTGTTACATCACCATCAAAGAA
ATACATGGTAGAAGGATACAACAATCTTGGTATAGGACATATTGGTAAAG
ATGAAGGAGGCTGGGACCATGGATTTGGTGCTGGTCATGGCTTCGCGTGG
GGTGGTCCTACTGCCCATGGTATGGGTCCCATAGCTCACAATGAAAGTGG
AGATTTTTCAGCCGAACATAATGGACAATACGGCTTCAGTCATGGTTATA
AAGGACGCTTTGGGTCTGGCTTAGCAGGTTGGGGTAACCCTTCCACTGGG
GATATGCTTGATACAGACCAAGAAATAGGGGAAGGTGACTACGAACCTCG
CCACCCGTTAGTGGTGCCTCAAGGTCGTGGACATTTTCACCACAATCATA
ATCATGGTATCGGTTATGGCTTCAGAAGTGGGTCTTAAAGCAATGTTCAA
GTAATTTGAGAAAAGGAAGAAATTCAAACGTTAAGAACAATTTCTGGTTT
GGTGATAAGATACAATTTGATCTTGTTTTAAAGCGGAAACAGTAATAAGT
AACGAAATACTATTTCAATTTCAGTTACAAGTAGAAGTCCGTGTTTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000012:790872..797893+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001831 ID=TCONS_00001831|Name=TCONS_00001831|organism=Clytia hemisphaerica|type=transcript|length=7022bp|location=Sequence derived from alignment at sc0000012:790872..797893+ (Clytia hemisphaerica)
GAGCACCAGAGCCGCCATGTGCACCACCACCAACAGAAGCTAAAGAAGAT AAACCTCCCACAGAAGCTAAAGACGATGGAGATAAACCTCCACCGAAGAA ACCGGCAACAAAGTAAGCAATGACGATTCTTTCAACATTCTTAcgaacaa aaataaagaaactgaGACACATTACGATCATCTTTAGAACAtttgagcat attttttttttttaaatctttgagcAGCTGAGACAGAAAATTCAATTCtt cctataaaaaatgttttcaaaaacaccTTTTAATAAGCATTATTCTTTTC GTTACAGGAAAGTTGACATCGAAGCTTTAGAAGACGCCGAAACTCCAAAG TCGAGACATAGACGACAATTAGTACCAACACATTATTATGGTCCACCAAG TGCAGGATGGGGTggtttccacccaggacatacTGGCGGTGGTTGGGGTG CTCCTTATTGGTACAAGTAAGTTTACCGATTTTATGACAGCTGTTTATGC ATGACGTGTTGATTGATTAATAATATGTTTTCTTCTCCGTATATGAAGCT ACTACTATGACTGTTTCATCGACTTTGATAACATAATGAGCTCTTCAGGG AAACTAATTCATAacatttcccatgttcaaacaAGTATTCCAGGAATTAG GGAGTTCCCCTATTAAGCTTTTGGCGAATCTGTCTCAAAAATGATGCTTT TTTCTCGTTTTAAACTGATGCctgtttgacatttttaaatatCTATACCG ACCAATCCAAGAGATTAAGCATTGTttaagaaatctaaaaattttgggaT TTTAGCTACTATTGTTTAAcactaatttttcttttttattcgtAGAAAAC GAACTCACACTCCACAAGTCAGACAATTAGTACCAACACATTATTATGGT CCACCAAGTGCAGGATGGGGCggtttccacccaggacatacTGGTGGAGG TTGGGGTGCTCCTTACTGGTACAAGTAAGTCCTCCATTTACTCtaacaaa atcaataaacacCGTCACTCTAATACTGTTCAGTTTCATTACTGTTGAAA AATATTACCCCTTACTATTACTATTTAGTAATGGTAATGGAAATAAATTC CCTTAGAGCTCAAATttatttcaacaaaaatcaTTGATAATCATTAACTG ATAAACCATCTTTAGAGATCTTCCCCTTGGCGTGAAACGAATTTTTCGAA GGAATCTTCTTGTTGTGATCTATTGAGTATTGTTGGGATAGATTGGcaaa tttttgaagaatatttttcataaaattgattttctgcCTTATAGAAAACG AACTCACACTCCACAAGTCAGACAATTAGTACCAACACATTATTATGGTC CACCAAGTGCAGGATGGGGTGGTTTCCAGCCAGGACNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNCCAGGACATACTGGTGGAGGTTGGGGTGCTCCT TACTGGTACAAGTAAGTCCTCCATTTACTCttacaaaatcaataaacacC GTCACTCTAATACTGTTCAGTTTCATTACTGTTGAAAAATATTACCCCTT ACTATTACTATTTAGTAATGGTAATGGAAATAAATTCCCTTAGAGCTCAA ATttatttcaacaaaaatcaTTGATAATCATTAACTGATAAACAACCATC TTTAGAGATCTTCCCCTTGACGTGAAACGAATTTTTCGAAGGAATCTTCT TGTTGTATCTATTGAGCATTGTTGGGATAGATTGGcaaatttttgaagaa tattttttataaaattgattttctgcCTTATAGAAAACGAACTCACACTC CACAAGTCAGACAATTAGTACCAACACATTATTATGGCCCACCAAGTGCA GGATGGGGTggtttccacccaggacatacTGGCGGAGGTTGGGGTGCTCC TTATTGGTATAAGTAAGATAATATCTATGATAAAATAAGGAATGTTCAAC TTCAATTGCTTTCCAAAGCTAACAACGTCTTGTTTTGTGCGTCAGAACTA TGGGTTGTTCCTAATCGTTTCAGTTACTCCGACGTCCTCAAAATAGTAGA ATAATAAACTTGGTATAGTTTCTCGTAGTAAATGATGAAATAGATTCACC GGCTACAATAGAATAAAGCGTACTTGAGTGCATCTATTTTGAGTTACTTT CATTATTATGTACACTTTTAGGAAAAGCGATACGAAGAATCCTGAAAAGA CTCACTCTGCAAAACAATTAGTTCCAACACATTATTATGGCCCACCAAGT GCAGGATGGGGTggtttccacccaggacatacTGGCGGAGGTTGGGGTTC CCCTTATTGGTACAAGTAAGTTAATATTTGTGAtgtaaagcaaaaaaaag tttaactttCGCTGCTATCAAAAGCTAACAAAGTCTTGTTTGGAAGCTGA AACGATACTAATATTTTAGATACGGCCTACGAGGTTTCGGTGTTGCAGAA ATCAATCGTTTTTACTCGGAATTCGGGTAATATTACGGAATCCTAAAATT GGTTCGGTATCTGAAATAGACGTATTTGTACGTCAAAATCTGGGTGATGA AAAGATTACATTCTTGAATTTCGGAATTTTTGCAAGATggctcaaaaaca aaatttttcggtttttcgaaaatcagaaCCCTCGTACGCCCCGCCCCCTA TACTACACTAAGAAGTATTTCCAgagattttgacattttagaaAATAGAT TTAAGTACTAGAGACGCCTACCCATTACGTCCTATGTATGGTCGATTGAG ATTTCTTAAGCATTTTCCAATTGCTTATATcccatttttttagaaaagac GATGTATCACCAAAGCAGCTAGTACCAACACATTATTATGGTCCACCAAG TGCAGGATGGGGCGGTTTCCACCCAGGACACACTGGTGGAGGTTGGGGTG CTCCTTATTGGTATAAGTAAGTTTGAACGAACATACTTTGATTTCCTCGG CTATTTCGATGTTTAAACTTGCGCACAGCTTTCTTGAAGAATCCTCTAAA CATGTTAGAGCTTTTGCATATACTGGTAATGTGAGGAAAAGCATTGCCAA AATAATGCAATGCTTTAATAAAATACGATTGGGAGATATTCTCTTTATAT CTTTAGGTTATAATGTTTTTCTATTCGAGTTGTAGCACTGAACTAAAGTT GGCAACACTATTCTGAATTATAATGGGAACTATATTATTTTACTTAAACC AACAGAAAACGAACTCACACTCCACAAGTTAGACAATTAGTACCAACACA CTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCAGCCAGGACATA CTGGTGGAGGTTGGGGTGCTCCTTATTGGTACAAGTAAGTTGTTTAGATT TCAAAGGCGTAGTCAGATAGTTTGAGATATTTGGTCTTTAGATTCCTCTT AATATTTCTGAGCAAACTTTTTTGTAAGCAATAGATCTCTCAACGTGGAA ACCCTGTGTGAACCCATCTTCAACGTTTTCAAAACatcgtttttcaaact tacaaAATCATTTTAGCAAAAAGAATTGGGGGTTTACCgccaaactaaaa aaaatatacAGACCAAAAGTCTTTTACCGTCTGGTAAGCCCTTCTAAAAA GGATCTACAAATGGCTAATAGACCTTTGTTGCCTTTATCATAAAAGTCTA ATATCAAAGTTTCAAGTCTAATATTTACCGTTGTTTTCATATAAATAGAA AAAGCGAAACGAAAAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTG CCAACGCATTATTATGGTCCACCAAGTGCGGGATGGGGTggtttccaccc aggacatacTGGCGGAGGATGGGGTGCTCCTTATTGGTACAAGTAAGTTG AACATTTTGATCATCTTTGCATGGTAACCCAAATCAAAGTTACTGCAAAC ATAGTTACCTAAAAGCTTCCTTTTCGAAGATTTTGACTTACTTGTGGCTC GTTCGCCTACCTTTTGTCAGGTAGTAGTTCATTTATCTACTGTATTTTCA AGTGGTCGTTGTAATTCGTGTCTTCACTTCGTCATTTGTCTTTACAGAAA AAGCGAGACAAAGAATCCAGGAAAAACTCACTCTACAAAACAATTAGTAC CAACGCATTATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCA GGACATACTGGTGGAGGATGGGGCGCTCCTTATTGGTACAAGTAAGTATA CTGATACCTTTTGGTAGCCATTTACGACAATGATGACGAAAATGTTTTCA GTCTCGTCAAAATTTGCCATTTCTTAGAAAGTGATGAGAAACTCATGTAT CTAGTGATGTAGTATATAAGCTCAAGTAGACTGATCTGTATTAAGGAATA AGAATTATAATTATTTTGAAAGAGGATTTGccacaatacacctttcccct tgatttcaattaaaaacgtttatattttttaccattttaattttttcaga aaaagtgaGACCAAGAATCCAGGAAAAACACACTCTACAAAACAATTAGT ACCAACACATTATTATGGTCCACCAAGTGCAGGATGGGGTggtttccacc caggacatacTGGCGGTGGATGGGGCGCTCCTTATTGGTATAAGTaagtc aattttaaaagttattttttgtgttttagcGATCCTTAGCAAGCTTAAGT ATCGATAgataaatcacgacgacggaagTTTTTCCTCTATCCTTGTTCAT TAACGCTGCGGATTTTTTCTTCAGGCTAACCTGAAAGCAAGGTAGATTTG CCCCGTGTAGTACATACAGTACATACAAGCGGAGCTTCATTGTATAAACA ATAACATAAGTTGATTTCTTTGAATGGTAAGTCTAAGTTATGCTCTCAGG TTAGCCTGTAGAAAAGTTCCGCAGCGCGAAAGAACAAGGCTAATGGAAAt ccgtccgtcgtcgtgattcaTCTATCGTTATTTAACCTCATTGTTGtgct caaataaaaaaagaaggtCAGCTTCCATATAAAAGCTCGTTATCATATTT TAGTTTCAGTACAATAGTTTTCTGTACAAGGTTGACTTGAACCTGCTTTG GAATATTACACACTAGAGTCCGTCGTACAGGCTAACTATCTTTGTCATGG TAATAAGTTATAACTAGTCCTCCTTTACCTTACCTCAGAAAAAGCGAAAC GAAGAATCCTGAAAAGACTCACTCTGCAAAACAATTAGTACCAACACATT ATTATGGTCCACCAAGTGCAGGATGGGGTGGTTTCCATCCAGGACATACT GGCGGAGGATGGGGCGCTCCTTATTGGTATAAGTAAGTGATTTATACCTA GTTTAgtgtatttttgtaaatttgaaaatttgttagaataaattcttaaa aaaataatcactttgtattattaattttgttgtGTCCCTTATAAATTACA ATTTATACAATTATGCTTTTTTCATCATTAACAAACTCGAAATCACCTTG ACCTTTATACTGCTGATCTTCTAACAGGTGCTAAAAGTTTCTAACCAAAC AAAATCACAGATAAGCACCATACTTTTATAGGAGATCAGGAATTGTTCGT TCCACCCATACTGAGAATGTTGTTACATCACCATCAAAGAAATACATGGT AGAAGGATACAACAATCTTGGTATAGGACATATTGGTAAAGATGAAGGAG GCTGGGACCATGGCTTTGGTGCTGGTCATGGCTTCGCGTGGGGTNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNCCTAGTTTAgtgtatttttgtaa atttgaaaatttgttagaataaattcttaaaaaaataatcactttgtatt attaattttgttgtGTCCCTTATAAATTACAATTTATACAATTATGCTTT TTTCATCATTAACAAACTCGAAATCACCTTGACCTTTATACTGCTGATCT TCTAACAGGTGCTAAAAGTTTCTAACCAAACAAAATCACAGATAAGCACC ATACTTTTATAGGAGATCAGGAATTGTTCGTTCCACCCATACTGAGAATG TTGTTACATCACCATCAAAGAAATACATGGTAGAAGGATACAACAATCTT GGTATAGGACATATTGGTAAAGATGAAGGAGGCTGGGACCATGGATTTGG TGCTGGTCATGGCTTCGCGTGGGGTGGTCCTACTGCCCATGGTATGGGTC CCATAGCTCACAATGAAAGTGGAGATTTTTCAGCCGAACATAATGGACAA TACGGCTTCAGTCATGGTTATAAAGGACGCTTTGGGTCTGGCTTAGCAGG TTGGGGTAACCCTTCCACTGGGGATATGCTTGATACAGACCAAGAAATAG GGGAAGGTGACTACGAACCTCGCCACCCGTTAGTGGTGCCTCAAGGTCGT GGACATTTTCACCACAATCATAATCATGGTATCGGTTATGGCTTCAGAAG TGGGTCTTAAAGCAATGTTCAAGTAATTTGAGAAAAGGAAGAAATTCAAA CGTTAAGAACAATTTCTGGTTTGGTGATAAGATACAATTTGATCTTGTTT TAAAGCGGAAACAGTAATAAGTAACGAAATACTATTTCAATTTCAGTTAC AAGTAGAAGTCCGTGTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000971XLOC_000971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001831-exon-sc0000012-1491911889:790872..790983TCONS_00001831-exon-sc0000012-1491911889:790872..790983Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1510915933:790872..790983TCONS_00001831-exon-sc0000012-1510915933:790872..790983Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1575043694:790872..790983TCONS_00001831-exon-sc0000012-1575043694:790872..790983Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1491911889:791179..791337TCONS_00001831-exon-sc0000012-1491911889:791179..791337Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1510915933:791179..791337TCONS_00001831-exon-sc0000012-1510915933:791179..791337Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1575043694:791179..791337TCONS_00001831-exon-sc0000012-1575043694:791179..791337Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1491911889:792755..792883TCONS_00001831-exon-sc0000012-1491911889:792755..792883Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1510915933:792755..792883TCONS_00001831-exon-sc0000012-1510915933:792755..792883Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1575043694:792755..792883TCONS_00001831-exon-sc0000012-1575043694:792755..792883Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1491911889:793143..793286TCONS_00001831-exon-sc0000012-1491911889:793143..793286Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1510915933:793143..793286TCONS_00001831-exon-sc0000012-1510915933:793143..793286Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1575043694:793143..793286TCONS_00001831-exon-sc0000012-1575043694:793143..793286Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1491911889:793765..793887TCONS_00001831-exon-sc0000012-1491911889:793765..793887Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1510915933:793765..793887TCONS_00001831-exon-sc0000012-1510915933:793765..793887Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1575043694:793765..793887TCONS_00001831-exon-sc0000012-1575043694:793765..793887Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1491911889:794177..794305TCONS_00001831-exon-sc0000012-1491911889:794177..794305Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1510915933:794177..794305TCONS_00001831-exon-sc0000012-1510915933:794177..794305Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1575043694:794177..794305TCONS_00001831-exon-sc0000012-1575043694:794177..794305Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1491911889:795019..795125TCONS_00001831-exon-sc0000012-1491911889:795019..795125Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1510915933:795019..795125TCONS_00001831-exon-sc0000012-1510915933:795019..795125Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1575043694:795019..795125TCONS_00001831-exon-sc0000012-1575043694:795019..795125Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1491911889:796217..796253TCONS_00001831-exon-sc0000012-1491911889:796217..796253Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1510915933:796217..796253TCONS_00001831-exon-sc0000012-1510915933:796217..796253Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1575043694:796217..796253TCONS_00001831-exon-sc0000012-1575043694:796217..796253Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1491911889:797284..797893TCONS_00001831-exon-sc0000012-1491911889:797284..797893Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1510915933:797284..797893TCONS_00001831-exon-sc0000012-1510915933:797284..797893Clytia hemisphaericaexon
TCONS_00001831-exon-sc0000012-1575043694:797284..797893TCONS_00001831-exon-sc0000012-1575043694:797284..797893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:790872..797893 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.263418 0 0 0.000167523 8.00592 6.68656 2.0437 1.98574 7.63698 4.95986 5.86719 3.78434 2.28163 6.66981 1.5362 1.56426 0 0 1.90579 0 2.84141 0.87624 3.70041 0.0599732 0.00359974 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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