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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001810 ID=TCONS_00001810|Name=TCONS_00001810|organism=Clytia hemisphaerica|type=transcript|length=1340bp
GCTATATTAAAAGTATGCGATTTTAAAAATAGCTCGTCTTTTCATTACAA
CAGTACATTGTTATCCGAGAGAAGAGGACAACGTCTGTCAACGTCACTAT
CTATTTAATTAAAGAGGATGCACATTAAAGTTATGGCTTGTTCAACAATC
TACACTTTACTCATGGTCACTGTCATCTACGGATGTATTGTCGAATCACG
ACCACAGAATTTTGATTTGCTTAACACAGCCGCTGgaaataaaaatcaag
aatGGAAAAATCATAAATCGTACGCATTCAAATGGGAAGgaGCCTTCTCT
TTGGGAGCACCCGAACATTCAAAATGCCCAATGGTCATGCAACCAGAACA
TGGCCGCTTTGTGTGCAGCGAAGGGACACTTTTGGAACGCAATATGTGTT
TAGTTGAATGTCAAATCGGTTTCGAGCAAGACCAACCACCAGTTGTTTAC
ATCTGTGAAAATGNGCGAAGGAACACTTTTGGAACGCAATATGTGTTTAG
TTGAATGTCAAATCGGTTTCGAGCAAGACCAACCACCAGTTGTTTACATC
TGTGAAAATGGAAAATGGTTTGATTTGAAACTCAACAATATTGATACACC
AGAGCCTCGTTGCGTCCCAAAACCAACACAAGTTGGACATTTCCCTGAGT
AAATTTCTTGAGTCGGAGGAATTCAAGAGCTTAAAGGAGGCGGAAAAGTg
ttaacaattttcaaaagcaacaagattttttgaaatgatgcGCCGTCATC
TAGTTTCCGGAGAACTGGAACCGACTCTCTCGCTCGCCTCTCGACCGATG
AGTGATAAGATGGAATTTTAAGTACTTTattaaaatttctatcaaacaAT
AGAGGAGATACTTAAGTGATGCTCCTTGAAAAATGACTTCGAATGTCTAT
ATGTGTTTACTTGGTTGGTTTTTACATGCCACCTACTTGGAGTGATCGCT
ATCACCACCAGAAAAATAAtacaaagattttaattttcaatttgcaGATG
ATGCGCTGGTTTGAGACCAGTTATTTTGTTTTGCAGTCACAAAAGAAAAC
TACAATGACATCAATGTATATAAAATGACAAACTTTTATAGAAGattatt
aaaaacataaatCCTAGTTAAGCTGGCTTGACCCCATCAATCGGGTTTTC
CGAATATCATTTTTTTTGTGAATATGTATGATAGAGAGAGTATATattat
ctaaaaacaaaatattataaatatttatttatttattatttcaattatta
tgaaaaagaaatttaactgaaatatcaaatttattaaAGATGAAATTCTG
TTTTAAAGATTTAGTTTATAGGAATTAATTTAGCAAAgat Run BLAST on NCBI transcript from alignment at sc0000012:757699..759462+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001810 ID=TCONS_00001810|Name=TCONS_00001810|organism=Clytia hemisphaerica|type=transcript|length=1764bp|location=Sequence derived from alignment at sc0000012:757699..759462+ (Clytia hemisphaerica)
GCTATATTAAAAGTATGCGATTTTAAAAATAGCTCGTCTTTTCATTACAA
CAGTACATTGTTATCCGAGAGAAGAGGACAACGTCTGTCAACGTCACTAT
CTATTTAATTAAAGAGGATGCACATTAAAGGTCAATTGTCATTCTTTTCT
TGTTATTGTCTTGCATTTAAACAAACCTTTTGTTCTCGCCTCCAACATAC
TTGTATAAATAGGCAAGAGTGTATACATCTCATAGCATTATTCAATAGTC
TACCACTGAGACATCACAACTTACAAAAAAGAATCGACTGATTAAGATCG
AGTCTTACTTAGTACACTACAGTTACGTTATAAAATCATCAACATTTTTA
CACAATAGTTATGGCTTGTTCAACAATCTACACTTTACTCATGGTCACTG
TCATCTACGGATGTATTGTCGAATCACGACCACAGAATTTTGATTTGCTT
AACACAGCCGCTGgaaataaaaatcaagaatGGAAAAATCATAAATCGTA
CGCATTCAAATGGGAAGGTAAGAAAAAGTTTCATTAAAACTCTCGTTTGA
TCATTGTAAAGCTTCTAAACTGTTAATAACAATCTAAGAGCACATGTTTT
CGTAATAAGCCTTCCTTGGTCTGAAATTCTCAATTCATTATTCGGAATTT
ATTGTAATTTACCTTTCATTGTATTGACCTGTTTTCTTAatcaatctttc
tttttttttacaggaGCCTTCTCTTTGGGAGCACCCGAACATTCAAAATG
CCCAATGGTCATGCAACCAGAACATGGCCGCTTTGTGTGCAGCGAAGGGA
CACTTTTGGAACGCAATATGTGTTTAGTTGAATGTCAAATCGGTTTCGAG
CAAGACCAACCACCAGTTGTTTACATCTGTGAAAATGNGCGAAGGAACAC
TTTTGGAACGCAATATGTGTTTAGTTGAATGTCAAATCGGTTTCGAGCAA
GACCAACCACCAGTTGTTTACATCTGTGAAAATGGAAAATGGTTTGATTT
GAAACTCAACAATATTGATACACCAGAGCCTCGTTGCGTCCCAAAACCAA
CACAAGTTGGACATTTCCCTGAGTAAATTTCTTGAGTCGGAGGAATTCAA
GAGCTTAAAGGAGGCGGAAAAGTgttaacaattttcaaaagcaacaagat
tttttgaaatgatgcGCCGTCATCTAGTTTCCGGAGAACTGGAACCGACT
CTCTCGCTCGCCTCTCGACCGATGAGTGATAAGATGGAATTTTAAGTACT
TTattaaaatttctatcaaacaATAGAGGAGATACTTAAGTGATGCTCCT
TGAAAAATGACTTCGAATGTCTATATGTGTTTACTTGGTTGGTTTTTACA
TGCCACCTACTTGGAGTGATCGCTATCACCACCAGAAAAATAAtacaaag
attttaattttcaatttgcaGATGATGCGCTGGTTTGAGACCAGTTATTT
TGTTTTGCAGTCACAAAAGAAAACTACAATGACATCAATGTATATAAAAT
GACAAACTTTTATAGAAGattattaaaaacataaatCCTAGTTAAGCTGG
CTTGACCCCATCAATCGGGTTTTCCGAATATCATTTTTTTTGTGAATATG
TATGATAGAGAGAGTATATattatctaaaaacaaaatattataaatattt
atttatttattatttcaattattatgaaaaagaaatttaactgaaatatc
aaatttattaaAGATGAAATTCTGTTTTAAAGATTTAGTTTATAGGAATT
AATTTAGCAAAgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001810-exon-sc0000012-1491911889:757699..757828 | TCONS_00001810-exon-sc0000012-1491911889:757699..757828 | Clytia hemisphaerica | exon |
| TCONS_00001810-exon-sc0000012-1510915933:757699..757828 | TCONS_00001810-exon-sc0000012-1510915933:757699..757828 | Clytia hemisphaerica | exon |
| TCONS_00001810-exon-sc0000012-1575043694:757699..757828 | TCONS_00001810-exon-sc0000012-1575043694:757699..757828 | Clytia hemisphaerica | exon |
| TCONS_00001810-exon-sc0000012-1491911889:758057..758215 | TCONS_00001810-exon-sc0000012-1491911889:758057..758215 | Clytia hemisphaerica | exon |
| TCONS_00001810-exon-sc0000012-1510915933:758057..758215 | TCONS_00001810-exon-sc0000012-1510915933:758057..758215 | Clytia hemisphaerica | exon |
| TCONS_00001810-exon-sc0000012-1575043694:758057..758215 | TCONS_00001810-exon-sc0000012-1575043694:758057..758215 | Clytia hemisphaerica | exon |
| TCONS_00001810-exon-sc0000012-1491911889:758412..759462 | TCONS_00001810-exon-sc0000012-1491911889:758412..759462 | Clytia hemisphaerica | exon |
| TCONS_00001810-exon-sc0000012-1510915933:758412..759462 | TCONS_00001810-exon-sc0000012-1510915933:758412..759462 | Clytia hemisphaerica | exon |
| TCONS_00001810-exon-sc0000012-1575043694:758412..759462 | TCONS_00001810-exon-sc0000012-1575043694:758412..759462 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:757699..759462 + |
Blast
The following BLAST results are available for this feature:
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