TCONS_00001791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001791
Unique NameTCONS_00001791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001791 ID=TCONS_00001791|Name=TCONS_00001791|organism=Clytia hemisphaerica|type=transcript|length=446bp
TGATATTCCGAGCACCTCGAGGAATTTCTACCAAGCGCTTCaagatatga
ttgataaacgtGTGGCGGAAAAAATGAATATAAACATGAATGCAAATTTG
GAGGTCTGTGTAACAACGTTTACAGCTACGGATGTCATAAAGTATGTGAA
GAAATGTGATGGTTCAGGATGCACAGAAATCGGAACTTGCTGGTGTCAAT
GTTACTCCAACACGAAGACATGGTGTAGATTAGCAGACACATCCAGACGT
GACCAATTCTTTTCTTGTCAAAAAGATTCAGATTGCGCACACACCAGAGA
ACAAGGATTGCGAGGGAAATCTGCTAAGGAGGTTTGCGAAATGAATTTCT
GTCTTTTTAGCTCCGGGCCAATATGTCATGGATCAAATccttaaatgttt
aaaaaggaagaaaatttgaatttgtcaaTGGTTATGGACAGTATTA
Run BLAST on NCBI

protein sequence of TCONS_00001791-protein

>TCONS_00001791-protein ID=TCONS_00001791-protein|Name=TCONS_00001791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
DIPSTSRNFYQALQDMIDKRVAEKMNINMNANLEVCVTTFTATDVIKYVK
KCDGSGCTEIGTCWCQCYSNTKTWCRLADTSRRDQFFSCQKDSDCAHTRE
QGLRGKSAKEVCEMNFCLFSSGPICHGSNP
Run BLAST on NCBI

transcript from alignment at sc0000012:510298..511201+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001791 ID=TCONS_00001791|Name=TCONS_00001791|organism=Clytia hemisphaerica|type=transcript|length=904bp|location=Sequence derived from alignment at sc0000012:510298..511201+ (Clytia hemisphaerica)
TGATATTCCGAGCACCTCGAGGAATTTCTACCAAGCGCTTCaagatatga
ttgataaacgtGTGGCGGAAAAAATGAATATAAACATGAATGCAAATTTG
GAGGTCTGTGTAACAACGTTTACAGCTACGGATGTCATAAAGTATGTGAA
GAAATGTGATGGTTCAGGATGCACAGAAATCGTAAGTAATATTTTGAAAG
CATTTTGGTTTTACAGCTCTCCATAAATGTATTTTGACTACTTGATTGAC
AAccacttttgtatttttggtgGTAGAATCTGCCAAATATAGCATCCTAT
GTACATTTACGTTAACTGTGCCTGTAAAACAATTCTAGTCTTTCCAAGTA
CCCCTCTCCCCTGGATTTGAGTTCAATTTCCCATATCAATCATCATCATT
TTGCAAGATCGCACAGAAGAAAAAGGAAAGCAATAGATATCAGGCTCAAA
CTGCAGATTTCTCATGATGTCTTAAGAAACATTTCTTGAGTGGCAATAAA
GATTTAAACGATGTGTAAGAAGCTAAATTTCGATATTATGCCAAAACTAC
TGTAAAGTACTCGCATACATTAAGGTATAACAATTATTTCATGAATTTCA
GGCACTCATATAGTTCCCGTATAATTCCTGTAACTTTAGGGAACTTGCTG
GTGTCAATGTTACTCCAACACGAAGACATGGTGTAGATTAGCAGACACAT
CCAGACGTGACCAATTCTTTTCTTGTCAAAAAGATTCAGATTGCGCACAC
ACCAGAGAACAAGGATTGCGAGGGAAATCTGCTAAGGAGGTTTGCGAAAT
GAATTTCTGTCTTTTTAGCTCCGGGCCAATATGTCATGGATCAAATcctt
aaatgtttaaaaaggaagaaaatttgaatttgtcaaTGGTTATGGACAGT
ATTA

Coding sequence (CDS) from alignment at sc0000012:510298..511201+

>TCONS_00001791 ID=TCONS_00001791|Name=TCONS_00001791|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0000012:510298..511201+ (Clytia hemisphaerica)
GATATTCCGAGCACCTCGAGGAATTTCTACCAAGCGCTTCaagatatgat
tgataaacgtGTGGCGGAAAAAATGAATATAAACATGAATGCAAATTTGG
AGGTCTGTGTAACAACGTTTACAGCTACGGATGTCATAAAGTATGTGAAG
AAATGTGATGGTTCAGGATGCACAGAAATCGGAACTTGCTGGTGTCAATG
TTACTCCAACACGAAGACATGGTGTAGATTAGCAGACACATCCAGACGTG
ACCAATTCTTTTCTTGTCAAAAAGATTCAGATTGCGCACACACCAGAGAA
CAAGGATTGCGAGGGAAATCTGCTAAGGAGGTTTGCGAAATGAATTTCTG
TCTTTTTAGCTCCGGGCCAATATGTCATGGATCAAATccttaaGATATTC
CGAGCACCTCGAGGAATTTCTACCAAGCGCTTCaagatatgattgataaa
cgtGTGGCGGAAAAAATGAATATAAACATGAATGCAAATTTGGAGGTCTG
TGTAACAACGTTTACAGCTACGGATGTCATAAAGTATGTGAAGAAATGTG
ATGGTTCAGGATGCACAGAAATCGGAACTTGCTGGTGTCAATGTTACTCC
AACACGAAGACATGGTGTAGATTAGCAGACACATCCAGACGTGACCAATT
CTTTTCTTGTCAAAAAGATTCAGATTGCGCACACACCAGAGAACAAGGAT
TGCGAGGGAAATCTGCTAAGGAGGTTTGCGAAATGAATTTCTGTCTTTTT
AGCTCCGGGCCAATATGTCATGGATCAAATccttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000961XLOC_000961Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001791-proteinTCONS_00001791-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001791-exon-sc0000012-1491911889:510298..510478TCONS_00001791-exon-sc0000012-1491911889:510298..510478Clytia hemisphaericaexon
TCONS_00001791-exon-sc0000012-1510915933:510298..510478TCONS_00001791-exon-sc0000012-1510915933:510298..510478Clytia hemisphaericaexon
TCONS_00001791-exon-sc0000012-1575043694:510298..510478TCONS_00001791-exon-sc0000012-1575043694:510298..510478Clytia hemisphaericaexon
TCONS_00001791-exon-sc0000012-1491911889:510937..511201TCONS_00001791-exon-sc0000012-1491911889:510937..511201Clytia hemisphaericaexon
TCONS_00001791-exon-sc0000012-1510915933:510937..511201TCONS_00001791-exon-sc0000012-1510915933:510937..511201Clytia hemisphaericaexon
TCONS_00001791-exon-sc0000012-1575043694:510937..511201TCONS_00001791-exon-sc0000012-1575043694:510937..511201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:510298..511201 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1667.41	1840.19	1656.93	1532.19	4477.29	3657.08	9113.65	7827.67	4934.13	4850.09	3660.74	3567.91	0	0	0	0.235113	1.0175	0.651698	13.5249	0.666069	52.2498	49.0689	529.135	467.299	0	0.430319	29.8928	39.1547	192.018	237.315
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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