Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001789 ID=TCONS_00001789|Name=TCONS_00001789|organism=Clytia hemisphaerica|type=transcript|length=606bp
tgcGCACAATGCTTTGTGCAGAAAGAATTTCAtcgtgaacttttttccgc
gcaaagcattgtgggcaattctcgggggtcaaatctggGTTTTCAtgtaa
agccgatatcgtctattgaattTGTCTACCAGTCGTATAGTGGAGTGTAT
CGAAAGAGGGTGTTCATCAGAATGATTCTTAAGACAGTATTGGTCGTGTT
GTGTTATTATGCCTGCTGTGATGCTAGTCTCTATGATTACCAAGAAGACC
ACTATAGTAGTTATTACAAGAAAGACGACCTTTCTGAGATTCCTCAACTT
GGAGATGCAAATCCATTGGTTAATTTAAAAGGTGAAGCTACCaggcaaaa
ttatttttacgaTGATTTGATCAATGCTAAAGGATGCCCAACACCTGTCT
TTAAGATTCAGATGGAGCGAGAAAGAGTGATCATATCAGATCCAATAGCC
ATTATAAAGCTATGTATGACAGACGAAAGATCACCAAAAATAAGAGTGGA
GCATCAGTTGAATTCAATGACATCATCAGCGGTGAATATACACCTTCCAA
TATGGATAATGGGCGAAGCCATGATGTCAAAAAATCTCGGCAATATGCGC
TGCTCA Run BLAST on NCBI protein sequence of TCONS_00001789-protein >TCONS_00001789-protein ID=TCONS_00001789-protein|Name=TCONS_00001789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
CAQCFVQKEFHRELFSAQSIVGNSRGSNLGFHVKPISSIEFVYQSYSGVY
RKRVFIRMILKTVLVVLCYYACCDASLYDYQEDHYSSYYKKDDLSEIPQL
GDANPLVNLKGEATRQNYFYDDLINAKGCPTPVFKIQMERERVIISDPIA
IIKLCMTDERSPKIRVEHQLNSMTSSAVNIHLPIWIMGEAMMSKNLGNMR
CS Run BLAST on NCBI transcript from alignment at sc0000012:490934..492005+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001789 ID=TCONS_00001789|Name=TCONS_00001789|organism=Clytia hemisphaerica|type=transcript|length=1072bp|location=Sequence derived from alignment at sc0000012:490934..492005+ (Clytia hemisphaerica)
tgcGCACAATGCTTTGTGCAGAAAGAATTTCAtcgtgaacttttttccgc
gcaaagcattgtgggcaattctcgggggtcaaatctggGTTTTCAtgtaa
agccgatatcgtctattgaattTGTCTACCAGTCGTATAGTGGAGTGTAT
CGAAAGAGGGTGTTCATCAGAATGATTCTTAAGACAGTATTGGTCGTGTT
GTGTTATTATGCCTGCTGTGATGCTAGTCTCTATGATTACCAAGAAGACC
ACTATAGTAGTTATTACAAGAAAGACGACCTTTCTGAGATTCCTCAACTT
GGAGATGCAAATCCATTGGTTAATTTAAAAGGTGAAGCTACCaggcaaaa
ttatttttacgaTGATTTGATCAATGCTAAAGGATGCCCAACACCTGTCT
TTAAGATTCAGATGGAGCGAGAAAGAGTGATCATATCAGATCCAATAGCC
ATTATAAAGCTATGTATGACAGACGAAAGATCACCAAAAATAAGAGTGGA
GCATCAGTTGAATTCAATGACATCATCAGCGGTGAATATACACCTTCCAA
TATGGATAATGGTAAGCTGCGCCTTGattatcaagatttttttaCATAGA
CACCCGCTGTCGCAGTAACCCCCGCAGTAACCCAGTGAGGATATTGCAGC
TGGAGTAAATATACCAATAGAAGAGATAATTCCAATTATATAAAATCACT
TGCTTTTGGGTGTAATTTCAGGCCCAGCGGAAGCGGTGGGACGGACCCct
tacccactggaaaatttggctgaaattgtcgcctttttggaaaaaatacc
ctacaatttcagccccattcAGAAATTGACTTCGTTTATCCCTTTGAAAT
TAAATGGAAAAttttgcactccaaaaccatttcCACTGGATTCTTTGACC
TGGGAGCAATAGAgtttctattcccattgggtTTTCAATCTTTATCATTA
GCAACAGAGCTTTTTTTGGAGCAAACAAAAAGATAAGAGAAAATAGATAA
TATTAATATGACTTTTGTATCATCCAGGGCGAAGCCATGATGTCAAAAAA
TCTCGGCAATATGCGCTGCTCA Coding sequence (CDS) from alignment at sc0000012:490934..492005+ >TCONS_00001789 ID=TCONS_00001789|Name=TCONS_00001789|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000012:490934..492005+ (Clytia hemisphaerica)
tgcGCACAATGCTTTGTGCAGAAAGAATTTCAtcgtgaacttttttccgc
gcaaagcattgtgggcaattctcgggggtcaaatctggGTTTTCAtgtaa
agccgatatcgtctattgaattTGTCTACCAGTCGTATAGTGGAGTGTAT
CGAAAGAGGGTGTTCATCAGAATGATTCTTAAGACAGTATTGGTCGTGTT
GTGTTATTATGCCTGCTGTGATGCTAGTCTCTATGATTACCAAGAAGACC
ACTATAGTAGTTATTACAAGAAAGACGACCTTTCTGAGATTCCTCAACTT
GGAGATGCAAATCCATTGGTTAATTTAAAAGGTGAAGCTACCaggcaaaa
ttatttttacgaTGATTTGATCAATGCTAAAGGATGCCCAACACCTGTCT
TTAAGATTCAGATGGAGCGAGAAAGAGTGATCATATCAGATCCAATAGCC
ATTATAAAGCTATGTATGACAGACGAAAGATCACCAAAAATAAGAGTGGA
GCATCAGTTGAATTCAATGACATCATCAGCGGTGAATATACACCTTCCAA
TATGGATAATGGGCGAAGCCATGATGTCAAAAAATCTCGGCAATATGCGC
TGCTCAtgcGCACAATGCTTTGTGCAGAAAGAATTTCAtcgtgaactttt
ttccgcgcaaagcattgtgggcaattctcgggggtcaaatctggGTTTTC
AtgtaaagccgatatcgtctattgaattTGTCTACCAGTCGTATAGTGGA
GTGTATCGAAAGAGGGTGTTCATCAGAATGATTCTTAAGACAGTATTGGT
CGTGTTGTGTTATTATGCCTGCTGTGATGCTAGTCTCTATGATTACCAAG
AAGACCACTATAGTAGTTATTACAAGAAAGACGACCTTTCTGAGATTCCT
CAACTTGGAGATGCAAATCCATTGGTTAATTTAAAAGGTGAAGCTACCag
gcaaaattatttttacgaTGATTTGATCAATGCTAAAGGATGCCCAACAC
CTGTCTTTAAGATTCAGATGGAGCGAGAAAGAGTGATCATATCAGATCCA
ATAGCCATTATAAAGCTATGTATGACAGACGAAAGATCACCAAAAATAAG
AGTGGAGCATCAGTTGAATTCAATGACATCATCAGCGGTGAATATACACC
TTCCAATATGGATAATGGGCGAAGCCATGATGTCAAAAAATCTCGGCAAT
ATGCGCTGCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001789-exon-sc0000012-1491911889:490934..491494 | TCONS_00001789-exon-sc0000012-1491911889:490934..491494 | Clytia hemisphaerica | exon |
| TCONS_00001789-exon-sc0000012-1510915933:490934..491494 | TCONS_00001789-exon-sc0000012-1510915933:490934..491494 | Clytia hemisphaerica | exon |
| TCONS_00001789-exon-sc0000012-1575043694:490934..491494 | TCONS_00001789-exon-sc0000012-1575043694:490934..491494 | Clytia hemisphaerica | exon |
| TCONS_00001789-exon-sc0000012-1491911889:491961..492005 | TCONS_00001789-exon-sc0000012-1491911889:491961..492005 | Clytia hemisphaerica | exon |
| TCONS_00001789-exon-sc0000012-1510915933:491961..492005 | TCONS_00001789-exon-sc0000012-1510915933:491961..492005 | Clytia hemisphaerica | exon |
| TCONS_00001789-exon-sc0000012-1575043694:491961..492005 | TCONS_00001789-exon-sc0000012-1575043694:491961..492005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:490934..492005 + |
Blast
The following BLAST results are available for this feature:
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