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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001785 ID=TCONS_00001785|Name=TCONS_00001785|organism=Clytia hemisphaerica|type=transcript|length=1102bp
TTTTGAATCAGATGTGCATGTTGTTAGTCATTTTAATGCCAAAACAACAT
CAACAGTCAAAACATTCTAAACCATGTTTAAACTGTAGAAATTATGATTC
AATTGGACtttcatctttttgttttgttttttgtaattacttTCAAAGCt
tcttaattttcttaaaaaaattggaaagcATAATGCTAAagtagtttcaa
aaaaaaaagcctTGTGTACTGTAACTTCTGAAtaacatttttgtaaacaa
aataatttcgtTTGAGATAAATTTGTTCTGCAAAGTTTTTTTGTGCATGA
AAGTTATCTGACGAGGTGTTGAGATTTTCTCTACTAGcacTAAAGTGATG
TTGCGTGTACATGGACATTGTTTGAATTTCAAGGAAATTAACCCTAAACT
AAGAGTTACAAATCCTTTTGTCTGCACAAGTAAAACCAACTGGTTAGCCG
AGATATCACTTGGAACTTTGACGTAAAGAAATTATTAAATGGTTGAACAA
GACAACATTTTGGCTGGTGATGAATAAAGATTCGGATGCCGGCGACTCTA
ATATAAGCATAATGATCAAATAATTGATAAATATATACTGtattgtgtca
cagacccggtggtaCTTCTACATACTGTAAAAATCAGACAAATTGTACCC
GGTTTAGAGAAAAACCCTGACTTTTCACCCACCCGGTAATCTATAATGAA
GGTTTATCTCTGAAGCTGTAAACAGTACCCTttcaccttttttataagaa
ccaacgtttttttttaacccttgggatgttcttaactttttttttctttt
aaaagcctaagaatatttttattttcatcttttagtgggtattttatcca
ttttctgagaaattgggtctgaaatgtTCTTACATTTTAACaaacgaagc
cttatgttcttataaagaaaacatgTGGAATTACACAATCGTTTAAGACA
AGCGATCTTTCATTCCTATCGTAATTTGTACCTTAATTTTATGTCTACta
cagtacacttttttttataaaaaccagtaaatttttgctgaggctcggct
gttcttattttttttggcactttgagccttgaattgttcttattttgttc
tt Run BLAST on NCBI transcript from alignment at sc0000012:465247..468247+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001785 ID=TCONS_00001785|Name=TCONS_00001785|organism=Clytia hemisphaerica|type=transcript|length=3001bp|location=Sequence derived from alignment at sc0000012:465247..468247+ (Clytia hemisphaerica)
TTTTGAATCAGATGTGCATGTTGTTAGTCATTTTAATGCCAAAACAACAT
CAACAGTCAAAACATTCTAAACCATGTTTAAACTGTAGAAATTATGATTC
AATTGGACtttcatctttttgttttgttttttgtaattacttTCAAAGCt
tcttaattttcttaaaaaaattggaaagcATAATGCTAAagtagtttcaa
aaaaaaaagcctTGTGTACTGTAACTTCTGAAtaacatttttgtaaacaa
aataatttcgtTTGAGATAAATTTGTTCTGCAAAGTTTTTTTGTGCATGA
AAGTTATCTGACGAGGTGTTGAGATTTTCTCTACTAGGCAAGTTAATTTT
TTTTAGATAAATCTTTAATTATAAGTGCAAGTTTATGCTAATCAGTAACC
AGTCAGTTAGCCATGGGCAGATATATTTTGGATTGCATTTTCCATTATTC
TGTTTAGCCTGAATTTCTTGGTTGTAAACTGTTTTTTGATCTTTCTTCTA
TTAACTCTGCCTAAATCCTTGTTGTAAGGCCATGGCTAAAAAATCTGTAG
CTTCACCCAACAATTGAATTAACACTTTTTGTTATTAATGCTAATAATTA
TaaagttttatatttattttttattttagcacTAAAGTGATGTTGCGTGT
ACATGGACATTGTTTGAATTTCAAGGAAATTAACCCTAAACTAAGTAAGT
CATTATTATGTCGCAATATGGTCTTACTCAGTATCTTgactctcaaaatt
ttattttacttccTCTCCAATGAAGAAAGTGATCAGTAAAAGACTactat
aaaacaatagaaattctttCCCTGTTGGTTTTTGATAGAAATGTTCATCC
CCACTGTGAGAataagttccaccggggctgtgagacaggagtgttatcaa
taaaaacaaagcttgagaagtaaaaagttaaaatacctGGACTTTTTCgt
cagtgaaatatttttccctaaaatggctatcaaaaaaaattcgaatcaCC
TCTAGATATGATTCTCAATAAGTTTGCGCAGTCTTTAAATGTAACTTTTC
AAATTGGTGGCCCTTCCCAAatgttttcatcaaaagttgcaaaagacacc
cctttctcactgCCCATTTGGAACTTTTgctttcagtggggataaaagct
tttatcaaaatcccaatgggaatagaaattatattgttccaaggttaaaa
gatccagtggggatggtttttgattgcaatttttaaacattgaatttaga
ATGGGGATGAAGTGTAAGTCAATTTTTATAGTGGACTGGAATCTCAGGGT
AATTTTCCATCAGGGACGAAGACAAATTTCTTGCCAAATTTCCCAAAGGA
GCTTTGACGGGGCTTTGACCTATTATTAGAACACATACCGTCTGGTCCCT
CAAGTGTAAGGTTTTACTTATGATGTAAAGTACGATTTAGCTGGTGAAGA
ACTTAAGATGTCACTTAAACTATAAGATTTTGTTTTTGTTCCTTTTTAGG
AGTTACAAATCCTTTTGTCTGCACAAGTAAAACCAACTGGTTAGCCGAGG
TAAGAATAAATATTTTTGAGTTATCTTCGATTACTTGCGTATAAGCCTAT
TATTCATTTCCCCATGTAATAACTATATTGAgaaattgacaatttttgat
tgttttttcattAGGCAAAAGGATCTAATATGGTTAAcactttttttcac
ttttcaaagatatttaacCATATGAACACTTGAGCTGATTTGTAACTCTC
GAATAGCGCTCTgcaacgcatacgtcataattattacttttttttacatt
tgtacgagttgtaatgcggctcaattaaagatacgtgcaagttcttatat
atcttttgtcaaatgatgcaattaatGTGCAAAAGAAACGCAAAAGGAGC
TCCAATGCTCGTacaaaccacagatatctgtaaagcccgaacgGCTagag
gcaactttaagctttctccagcaaaaaaaagtgaagcaaaaatttgactt
tttaaatttcgtgccgatggataggatctagcattttaattgttttcgga
gcgcgagataaaaaaagtAGACGGCAagcgctatttcacatctctcaaac
cggtaaaattgcatattttagtcacgtgactttggtaggaaatccttcca
aacctaggcttcacttttcgataaaagccgcaaatctagcccttcgNNNN
NNNNNNNNNNCAAACACATCAAgaagagtaatgattatgtcaaaagtgTG
CGCTATATAAACCTTGAAAGATGCTTACCCTATTTCCCATTCAAGCTACC
AAATTGACAGAATTTTGGAACTCcttctgaaaattttattttgtctttca
gATATCACTTGGAACTTTGACGTAAAGAAATTATTAAATGGTTGAACAAG
ACAACATTTTGGCTGGTGATGAATAAAGATTCGGATGCCGGCGACTCTAA
TATAAGCATAATGATCAAATAATTGATAAATATATACTGtattgtgtcac
agacccggtggtaCTTCTACATACTGTAAAAATCAGACAAATTGTACCCG
GTTTAGAGAAAAACCCTGACTTTTCACCCACCCGGTAATCTATAATGAAG
GTTTATCTCTGAAGCTGTAAACAGTACCCTttcaccttttttataagaac
caacgtttttttttaacccttgggatgttcttaactttttttttctttta
aaagcctaagaatatttttattttcatcttttagtgggtattttatccat
tttctgagaaattgggtctgaaatgtTCTTACATTTTAACaaacgaagcc
ttatgttcttataaagaaaacatgTGGAATTACACAATCGTTTAAGACAA
GCGATCTTTCATTCCTATCGTAATTTGTACCTTAATTTTATGTCTACtac
agtacacttttttttataaaaaccagtaaatttttgctgaggctcggctg
ttcttattttttttggcactttgagccttgaattgttcttattttgttct
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001785-exon-sc0000012-1491911889:465247..465583 | TCONS_00001785-exon-sc0000012-1491911889:465247..465583 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1510915933:465247..465583 | TCONS_00001785-exon-sc0000012-1510915933:465247..465583 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1575043694:465247..465583 | TCONS_00001785-exon-sc0000012-1575043694:465247..465583 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1491911889:465876..465940 | TCONS_00001785-exon-sc0000012-1491911889:465876..465940 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1510915933:465876..465940 | TCONS_00001785-exon-sc0000012-1510915933:465876..465940 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1575043694:465876..465940 | TCONS_00001785-exon-sc0000012-1575043694:465876..465940 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1491911889:466746..466795 | TCONS_00001785-exon-sc0000012-1491911889:466746..466795 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1510915933:466746..466795 | TCONS_00001785-exon-sc0000012-1510915933:466746..466795 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1575043694:466746..466795 | TCONS_00001785-exon-sc0000012-1575043694:466746..466795 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1491911889:467598..468247 | TCONS_00001785-exon-sc0000012-1491911889:467598..468247 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1510915933:467598..468247 | TCONS_00001785-exon-sc0000012-1510915933:467598..468247 | Clytia hemisphaerica | exon |
| TCONS_00001785-exon-sc0000012-1575043694:467598..468247 | TCONS_00001785-exon-sc0000012-1575043694:467598..468247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:465247..468247 + |
Blast
The following BLAST results are available for this feature:
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