TCONS_00001783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001783
Unique NameTCONS_00001783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001783 ID=TCONS_00001783|Name=TCONS_00001783|organism=Clytia hemisphaerica|type=transcript|length=1280bp
cttttttgattttatcaaacgcacaaaaacaacaaagcaGTCTTCTTGAA
TTTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAGCTTAAGATTTGA
AGCAGTTGAAGTAACATGAAGGACTTTATTGTCAAGAATAACAGAATTTA
CTCCAAGCTaagtatattttattatttttttacaacttATATTGTTTTTT
TGGGATTAAAGAAAGTTATTAAAAAATGATAAGGAAGATTTAAGACAGAA
AAAAGGTACTatactgtttgaaatttttttatggcttTTGATGCATTTTT
TTTCAAGGACGATGTTGATATTATTTCATTGCTGTACATTATATGCTACA
TTGTATAGTAAAGAGAAAAGCAAGCTTGAAttacagattttgaaaataat
ttagatTTACTTTAGCTAGAGGATTCTGTTTTTATGTTGTGTTTGTTTGT
ATTCTCTTCATTTTGGTTTTACACATATTTTGATTTCGTCCATATTATag
taaaaatcttttgatcacTAAAGTGATGTTGCGTGTACATGGACATTGTT
TGAATTTCAAGGAAATTAACCCTAAACTAAGAGTTACAAATCCTTTTGTC
TGCACAAGTAAAACCAACTGGTTAGCCGAGATATCACTTGGAACTTTGAC
GTAAAGAAATTATTAAATGGTTGAACAAGACAACATTTTGGCTGGTGATG
AATAAAGATTCGGATGCCGGCGACTCTAATATAAGCATAATGATCAAATA
ATTGATAAATATATACTGtattgtgtcacagacccggtggtaCTTCTACA
TACTGTAAAAATCAGACAAATTGTACCCGGTTTAGAGAAAAACCCTGACT
TTTCACCCACCCGGTAATCTATAATGAAGGTTTATCTCTGAAGCTGTAAA
CAGTACCCTttcaccttttttataagaaccaacgtttttttttaaccctt
gggatgttcttaactttttttttcttttaaaagcctaagaatatttttat
tttcatcttttagtgggtattttatccattttctgagaaattgggtctga
aatgtTCTTACATTTTAACaaacgaagccttatgttcttataaagaaaac
atgTGGAATTACACAATCGTTTAAGACAAGCGATCTTTCATTCCTATCGT
AATTTGTACCTTAATTTTATGTCTACtacagtacacttttttttataaaa
accagtaaatttttgctgaggctcggctgttcttattttttttggcactt
tgagccttgaattgttcttattttgttctt
Run BLAST on NCBI

transcript from alignment at sc0000012:464321..468247+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001783 ID=TCONS_00001783|Name=TCONS_00001783|organism=Clytia hemisphaerica|type=transcript|length=3927bp|location=Sequence derived from alignment at sc0000012:464321..468247+ (Clytia hemisphaerica)
cttttttgattttatcaaacgcacaaaaacaacaaagcaGTCTTCTTGAA TTTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAGCTTAAGATTTGA AGCAGTTGAAGTAACATGAAGGACTTTATTGTCAAGAATAACAGAATTTA CTCCAAGCTaagtatattttattatttttttacaacttATATTGTTTTTT TGGGATTAAAGAAAGTTATTAAAAAATGATAAGGAAGATTTAAGACAGAA AAAAGGTACTatactgtttgaaatttttttatggcttTTGATGCATTTTT TTTCAAGGACGATGTTGATATTATTTCATTGCTGTACATTATATGCTACA TTGTATAGTAAAGAGAAAAGCAAGCTTGAAttacagattttgaaaataat ttagatTTACTTTAGCTAGAGGATTCTGTTTTTATGTTGTGTTTGTTTGT ATTCTCTTCATTTTGGTTTTACACATATTTTGATTTCGTCCATATTATag taaaaatcttttgatgtaTGTAAATCTTTGAACAAATATTTCCACTTACA GTATGGCAAatgcaaaaactaaatttgagtCGATTTGTTGATTAGAGATG GATCATTATTTCTCCCTTAGATCTTTTTGAAACACTGTAATATCTGGCAT ATGTGTAGTCATCAAGCATGCCAAACACATATCAGCATTAGCCATTCAAT AGAGTGTCAAAATGTGGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNTGAAGTTCTTTTGAATCAGATGTGCATGTTGT TAGTCATTTTAATGCCAAAACAACATCAACAGTCAAAACATTCTAAACCA TGTTTAAACTGTAGAAATTATGATTCAATTGGACtttcatctttttgttt tgttttttgtaattacttTCAAAGCttcttaattttcttaaaaaaattgg aaagcATAATGCTAAagtagtttcaaaaaaaaaagcctTGTGTACTGTAA CTTCTGAAtaacatttttgtaaacaaaataatttcgtTTGAGATAAATTT GTTCTGCAAAGTTTTTTTGTGCATGAAAGTTATCTGACGAGGTGTTGAGA TTTTCTCTACTAGGCAAGTTAATTTTTTTTAGATAAATCTTTAATTATAA GTGCAAGTTTATGCTAATCAGTAACCAGTCAGTTAGCCATGGGCAGATAT ATTTTGGATTGCATTTTCCATTATTCTGTTTAGCCTGAATTTCTTGGTTG TAAACTGTTTTTTGATCTTTCTTCTATTAACTCTGCCTAAATCCTTGTTG TAAGGCCATGGCTAAAAAATCTGTAGCTTCACCCAACAATTGAATTAACA CTTTTTGTTATTAATGCTAATAATTATaaagttttatatttattttttat tttagcacTAAAGTGATGTTGCGTGTACATGGACATTGTTTGAATTTCAA GGAAATTAACCCTAAACTAAGTAAGTCATTATTATGTCGCAATATGGTCT TACTCAGTATCTTgactctcaaaattttattttacttccTCTCCAATGAA GAAAGTGATCAGTAAAAGACTactataaaacaatagaaattctttCCCTG TTGGTTTTTGATAGAAATGTTCATCCCCACTGTGAGAataagttccaccg gggctgtgagacaggagtgttatcaataaaaacaaagcttgagaagtaaa aagttaaaatacctGGACTTTTTCgtcagtgaaatatttttccctaaaat ggctatcaaaaaaaattcgaatcaCCTCTAGATATGATTCTCAATAAGTT TGCGCAGTCTTTAAATGTAACTTTTCAAATTGGTGGCCCTTCCCAAatgt tttcatcaaaagttgcaaaagacacccctttctcactgCCCATTTGGAAC TTTTgctttcagtggggataaaagcttttatcaaaatcccaatgggaata gaaattatattgttccaaggttaaaagatccagtggggatggtttttgat tgcaatttttaaacattgaatttagaATGGGGATGAAGTGTAAGTCAATT TTTATAGTGGACTGGAATCTCAGGGTAATTTTCCATCAGGGACGAAGACA AATTTCTTGCCAAATTTCCCAAAGGAGCTTTGACGGGGCTTTGACCTATT ATTAGAACACATACCGTCTGGTCCCTCAAGTGTAAGGTTTTACTTATGAT GTAAAGTACGATTTAGCTGGTGAAGAACTTAAGATGTCACTTAAACTATA AGATTTTGTTTTTGTTCCTTTTTAGGAGTTACAAATCCTTTTGTCTGCAC AAGTAAAACCAACTGGTTAGCCGAGGTAAGAATAAATATTTTTGAGTTAT CTTCGATTACTTGCGTATAAGCCTATTATTCATTTCCCCATGTAATAACT ATATTGAgaaattgacaatttttgattgttttttcattAGGCAAAAGGAT CTAATATGGTTAAcactttttttcacttttcaaagatatttaacCATATG AACACTTGAGCTGATTTGTAACTCTCGAATAGCGCTCTgcaacgcatacg tcataattattacttttttttacatttgtacgagttgtaatgcggctcaa ttaaagatacgtgcaagttcttatatatcttttgtcaaatgatgcaatta atGTGCAAAAGAAACGCAAAAGGAGCTCCAATGCTCGTacaaaccacaga tatctgtaaagcccgaacgGCTagaggcaactttaagctttctccagcaa aaaaaagtgaagcaaaaatttgactttttaaatttcgtgccgatggatag gatctagcattttaattgttttcggagcgcgagataaaaaaagtAGACGG CAagcgctatttcacatctctcaaaccggtaaaattgcatattttagtca cgtgactttggtaggaaatccttccaaacctaggcttcacttttcgataa aagccgcaaatctagcccttcgNNNNNNNNNNNNNNCAAACACATCAAga agagtaatgattatgtcaaaagtgTGCGCTATATAAACCTTGAAAGATGC TTACCCTATTTCCCATTCAAGCTACCAAATTGACAGAATTTTGGAACTCc ttctgaaaattttattttgtctttcagATATCACTTGGAACTTTGACGTA AAGAAATTATTAAATGGTTGAACAAGACAACATTTTGGCTGGTGATGAAT AAAGATTCGGATGCCGGCGACTCTAATATAAGCATAATGATCAAATAATT GATAAATATATACTGtattgtgtcacagacccggtggtaCTTCTACATAC TGTAAAAATCAGACAAATTGTACCCGGTTTAGAGAAAAACCCTGACTTTT CACCCACCCGGTAATCTATAATGAAGGTTTATCTCTGAAGCTGTAAACAG TACCCTttcaccttttttataagaaccaacgtttttttttaacccttggg atgttcttaactttttttttcttttaaaagcctaagaatatttttatttt catcttttagtgggtattttatccattttctgagaaattgggtctgaaat gtTCTTACATTTTAACaaacgaagccttatgttcttataaagaaaacatg TGGAATTACACAATCGTTTAAGACAAGCGATCTTTCATTCCTATCGTAAT TTGTACCTTAATTTTATGTCTACtacagtacacttttttttataaaaacc agtaaatttttgctgaggctcggctgttcttattttttttggcactttga gccttgaattgttcttattttgttctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000957XLOC_000957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001783-exon-sc0000012-1491911889:464321..464835TCONS_00001783-exon-sc0000012-1491911889:464321..464835Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1510915933:464321..464835TCONS_00001783-exon-sc0000012-1510915933:464321..464835Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1575043694:464321..464835TCONS_00001783-exon-sc0000012-1575043694:464321..464835Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1491911889:465876..465940TCONS_00001783-exon-sc0000012-1491911889:465876..465940Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1510915933:465876..465940TCONS_00001783-exon-sc0000012-1510915933:465876..465940Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1575043694:465876..465940TCONS_00001783-exon-sc0000012-1575043694:465876..465940Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1491911889:466746..466795TCONS_00001783-exon-sc0000012-1491911889:466746..466795Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1510915933:466746..466795TCONS_00001783-exon-sc0000012-1510915933:466746..466795Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1575043694:466746..466795TCONS_00001783-exon-sc0000012-1575043694:466746..466795Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1491911889:467598..468247TCONS_00001783-exon-sc0000012-1491911889:467598..468247Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1510915933:467598..468247TCONS_00001783-exon-sc0000012-1510915933:467598..468247Clytia hemisphaericaexon
TCONS_00001783-exon-sc0000012-1575043694:467598..468247TCONS_00001783-exon-sc0000012-1575043694:467598..468247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:464321..468247 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.27842 0 0.126684 0.35179 0.842337 0 0.499906 1.43739 0.860994 0.680563 0.958831 0.637037 1.13351 0.823983 0 0.105237 1.18553 0.653339 0 0 0.971156 0.577822 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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