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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001782 ID=TCONS_00001782|Name=TCONS_00001782|organism=Clytia hemisphaerica|type=transcript|length=927bp
ccttttttgattttatcaaacgcacaaaaacaacaaagcaGTCTTCTTGA
ATTTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAGCTTAAGATTTG
AAGCAGTTGAAGTAACATGAAGGACTTTATTGTCAAGAATAACAGAATTT
ACTCCAAGCTaacacTAAAGTGATGTTGCGTGTACATGGACATTGTTTGA
ATTTCAAGGAAATTAACCCTAAACTAAGAGTTACAAATCCTTTTGTCTGC
ACAAGTAAAACCAACTGGTTAGCCGAGATATCACTTGGAACTTTGACGTA
AAGAAATTATTAAATGGTTGAACAAGACAACATTTTGGCTGGTGATGAAT
AAAGATTCGGATGCCGGCGACTCTAATATAAGCATAATGATCAAATAATT
GATAAATATATACTGtattgtgtcacagacccggtggtaCTTCTACATAC
TGTAAAAATCAGACAAATTGTACCCGGTTTAGAGAAAAACCCTGACTTTT
CACCCACCCGGTAATCTATAATGAAGGTTTATCTCTGAAGCTGTAAACAG
TACCCTttcaccttttttataagaaccaacgtttttttttaacccttggg
atgttcttaactttttttttcttttaaaagcctaagaatatttttatttt
catcttttagtgggtattttatccattttctgagaaattgggtctgaaat
gtTCTTACATTTTAACaaacgaagccttatgttcttataaagaaaacatg
TGGAATTACACAATCGTTTAAGACAAGCGATCTTTCATTCCTATCGTAAT
TTGTACCTTAATTTTATGTCTACtacagtacacttttttttataaaaacc
agtaaatttttgctgaggctcggctgttcttattttttttggcactttga
gccttgaattgttcttattttgttctt Run BLAST on NCBI transcript from alignment at sc0000012:464320..468247+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001782 ID=TCONS_00001782|Name=TCONS_00001782|organism=Clytia hemisphaerica|type=transcript|length=3928bp|location=Sequence derived from alignment at sc0000012:464320..468247+ (Clytia hemisphaerica)
ccttttttgattttatcaaacgcacaaaaacaacaaagcaGTCTTCTTGA
ATTTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAGCTTAAGATTTG
AAGCAGTTGAAGTAACATGAAGGACTTTATTGTCAAGAATAACAGAATTT
ACTCCAAGCTaagtatattttattatttttttacaacttATATTGTTTTT
TTGGGATTAAAGAAAGTTATTAAAAAATGATAAGGAAGATTTAAGACAGA
AAAAAGGTACTatactgtttgaaatttttttatggcttTTGATGCATTTT
TTTTCAAGGACGATGTTGATATTATTTCATTGCTGTACATTATATGCTAC
ATTGTATAGTAAAGAGAAAAGCAAGCTTGAAttacagattttgaaaataa
tttagatTTACTTTAGCTAGAGGATTCTGTTTTTATGTTGTGTTTGTTTG
TATTCTCTTCATTTTGGTTTTACACATATTTTGATTTCGTCCATATTATa
gtaaaaatcttttgatgtaTGTAAATCTTTGAACAAATATTTCCACTTAC
AGTATGGCAAatgcaaaaactaaatttgagtCGATTTGTTGATTAGAGAT
GGATCATTATTTCTCCCTTAGATCTTTTTGAAACACTGTAATATCTGGCA
TATGTGTAGTCATCAAGCATGCCAAACACATATCAGCATTAGCCATTCAA
TAGAGTGTCAAAATGTGGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTGAAGTTCTTTTGAATCAGATGTGCATGTTG
TTAGTCATTTTAATGCCAAAACAACATCAACAGTCAAAACATTCTAAACC
ATGTTTAAACTGTAGAAATTATGATTCAATTGGACtttcatctttttgtt
ttgttttttgtaattacttTCAAAGCttcttaattttcttaaaaaaattg
gaaagcATAATGCTAAagtagtttcaaaaaaaaaagcctTGTGTACTGTA
ACTTCTGAAtaacatttttgtaaacaaaataatttcgtTTGAGATAAATT
TGTTCTGCAAAGTTTTTTTGTGCATGAAAGTTATCTGACGAGGTGTTGAG
ATTTTCTCTACTAGGCAAGTTAATTTTTTTTAGATAAATCTTTAATTATA
AGTGCAAGTTTATGCTAATCAGTAACCAGTCAGTTAGCCATGGGCAGATA
TATTTTGGATTGCATTTTCCATTATTCTGTTTAGCCTGAATTTCTTGGTT
GTAAACTGTTTTTTGATCTTTCTTCTATTAACTCTGCCTAAATCCTTGTT
GTAAGGCCATGGCTAAAAAATCTGTAGCTTCACCCAACAATTGAATTAAC
ACTTTTTGTTATTAATGCTAATAATTATaaagttttatatttatttttta
ttttagcacTAAAGTGATGTTGCGTGTACATGGACATTGTTTGAATTTCA
AGGAAATTAACCCTAAACTAAGTAAGTCATTATTATGTCGCAATATGGTC
TTACTCAGTATCTTgactctcaaaattttattttacttccTCTCCAATGA
AGAAAGTGATCAGTAAAAGACTactataaaacaatagaaattctttCCCT
GTTGGTTTTTGATAGAAATGTTCATCCCCACTGTGAGAataagttccacc
ggggctgtgagacaggagtgttatcaataaaaacaaagcttgagaagtaa
aaagttaaaatacctGGACTTTTTCgtcagtgaaatatttttccctaaaa
tggctatcaaaaaaaattcgaatcaCCTCTAGATATGATTCTCAATAAGT
TTGCGCAGTCTTTAAATGTAACTTTTCAAATTGGTGGCCCTTCCCAAatg
ttttcatcaaaagttgcaaaagacacccctttctcactgCCCATTTGGAA
CTTTTgctttcagtggggataaaagcttttatcaaaatcccaatgggaat
agaaattatattgttccaaggttaaaagatccagtggggatggtttttga
ttgcaatttttaaacattgaatttagaATGGGGATGAAGTGTAAGTCAAT
TTTTATAGTGGACTGGAATCTCAGGGTAATTTTCCATCAGGGACGAAGAC
AAATTTCTTGCCAAATTTCCCAAAGGAGCTTTGACGGGGCTTTGACCTAT
TATTAGAACACATACCGTCTGGTCCCTCAAGTGTAAGGTTTTACTTATGA
TGTAAAGTACGATTTAGCTGGTGAAGAACTTAAGATGTCACTTAAACTAT
AAGATTTTGTTTTTGTTCCTTTTTAGGAGTTACAAATCCTTTTGTCTGCA
CAAGTAAAACCAACTGGTTAGCCGAGGTAAGAATAAATATTTTTGAGTTA
TCTTCGATTACTTGCGTATAAGCCTATTATTCATTTCCCCATGTAATAAC
TATATTGAgaaattgacaatttttgattgttttttcattAGGCAAAAGGA
TCTAATATGGTTAAcactttttttcacttttcaaagatatttaacCATAT
GAACACTTGAGCTGATTTGTAACTCTCGAATAGCGCTCTgcaacgcatac
gtcataattattacttttttttacatttgtacgagttgtaatgcggctca
attaaagatacgtgcaagttcttatatatcttttgtcaaatgatgcaatt
aatGTGCAAAAGAAACGCAAAAGGAGCTCCAATGCTCGTacaaaccacag
atatctgtaaagcccgaacgGCTagaggcaactttaagctttctccagca
aaaaaaagtgaagcaaaaatttgactttttaaatttcgtgccgatggata
ggatctagcattttaattgttttcggagcgcgagataaaaaaagtAGACG
GCAagcgctatttcacatctctcaaaccggtaaaattgcatattttagtc
acgtgactttggtaggaaatccttccaaacctaggcttcacttttcgata
aaagccgcaaatctagcccttcgNNNNNNNNNNNNNNCAAACACATCAAg
aagagtaatgattatgtcaaaagtgTGCGCTATATAAACCTTGAAAGATG
CTTACCCTATTTCCCATTCAAGCTACCAAATTGACAGAATTTTGGAACTC
cttctgaaaattttattttgtctttcagATATCACTTGGAACTTTGACGT
AAAGAAATTATTAAATGGTTGAACAAGACAACATTTTGGCTGGTGATGAA
TAAAGATTCGGATGCCGGCGACTCTAATATAAGCATAATGATCAAATAAT
TGATAAATATATACTGtattgtgtcacagacccggtggtaCTTCTACATA
CTGTAAAAATCAGACAAATTGTACCCGGTTTAGAGAAAAACCCTGACTTT
TCACCCACCCGGTAATCTATAATGAAGGTTTATCTCTGAAGCTGTAAACA
GTACCCTttcaccttttttataagaaccaacgtttttttttaacccttgg
gatgttcttaactttttttttcttttaaaagcctaagaatatttttattt
tcatcttttagtgggtattttatccattttctgagaaattgggtctgaaa
tgtTCTTACATTTTAACaaacgaagccttatgttcttataaagaaaacat
gTGGAATTACACAATCGTTTAAGACAAGCGATCTTTCATTCCTATCGTAA
TTTGTACCTTAATTTTATGTCTACtacagtacacttttttttataaaaac
cagtaaatttttgctgaggctcggctgttcttattttttttggcactttg
agccttgaattgttcttattttgttctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001782-exon-sc0000012-1491911889:464320..464481 | TCONS_00001782-exon-sc0000012-1491911889:464320..464481 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1510915933:464320..464481 | TCONS_00001782-exon-sc0000012-1510915933:464320..464481 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1575043694:464320..464481 | TCONS_00001782-exon-sc0000012-1575043694:464320..464481 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1491911889:465876..465940 | TCONS_00001782-exon-sc0000012-1491911889:465876..465940 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1510915933:465876..465940 | TCONS_00001782-exon-sc0000012-1510915933:465876..465940 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1575043694:465876..465940 | TCONS_00001782-exon-sc0000012-1575043694:465876..465940 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1491911889:466746..466795 | TCONS_00001782-exon-sc0000012-1491911889:466746..466795 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1510915933:466746..466795 | TCONS_00001782-exon-sc0000012-1510915933:466746..466795 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1575043694:466746..466795 | TCONS_00001782-exon-sc0000012-1575043694:466746..466795 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1491911889:467598..468247 | TCONS_00001782-exon-sc0000012-1491911889:467598..468247 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1510915933:467598..468247 | TCONS_00001782-exon-sc0000012-1510915933:467598..468247 | Clytia hemisphaerica | exon |
| TCONS_00001782-exon-sc0000012-1575043694:467598..468247 | TCONS_00001782-exon-sc0000012-1575043694:467598..468247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:464320..468247 + |
Blast
The following BLAST results are available for this feature:
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