|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001776 ID=TCONS_00001776|Name=TCONS_00001776|organism=Clytia hemisphaerica|type=transcript|length=809bp
GGAATCACACCACTCATGCTGAAATCTTGTATCCACAACCAGCAATGTTT
CGTTTTACTTCGCGACATCATTCTCGAGGTTTGGGACAATGAATCTCCAC
CCGAATCCTGGGATACCGGTCTGCTgaaagttttgccaaaaaaaggaGAC
CTTAGTCTACCCGGCAACTATCGTGGCATCATGCTTTTGGTAGTTGCTTA
CAAAATCCTTGCCATACTTATCCATGATCGTTTACAGCCACTTGTCGAAT
CTCTAGACCATGAAGCACAATGTGGCTTCCGCTCAGGAAGGGGTTGTNAT
CATGCTTTTGGAAGTTGCTTACAAAATCCTTGCCATACTTATCCATGATC
GTTTACAGCCACTTGTCGAATCTCTAGACCATGAAGCACAATGTGGCTTC
CGCTCAGGAAGGGGTTGTTTAGACGCTATTTTTGCTGTGAATATGGCTAT
GAAAAAGCGTAGAGAACATAGTAAAGAAACATGGATTTTGTTCCTTGact
taaTCAAGGCCTTTGACCGAGTCCCTAGAGATATGTTGTGGGAAGTGTTA
GAAAAATTTGGCGCACCCATCAAGTTAATTCGACTGATAAAATCACTTCA
TGATAATTTCAAAGTAgattttgaaatagaaaattgcAAGCATTCAATCA
ACTGTACCATCGGAGTTAAACAAGGGGACATTCTTGGGCCTGTACTCTTC
GTTGTTTACATAGCGGCTATAATGATCACTTGGCGTAAACTGCACGATCG
ACCTCTTTGTATGTTCAGAACCAAGAAGGATTTCTGTATGACAGGGAGAC
GAGTTACTG Run BLAST on NCBI protein sequence of TCONS_00001776-protein >TCONS_00001776-protein ID=TCONS_00001776-protein|Name=TCONS_00001776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MKHNVASAQEGVXIMLLEVAYKILAILIHDRLQPLVESLDHEAQCGFRSG
RGCLDAIFAVNMAMKKRREHSKETWILFLDLIKAFDRVPRDMLWEVLEKF
GAPIKLIRLIKSLHDNFKVDFEIENCKHSINCTIGVKQGDILGPVLFVVY
IAAIMITWRKLHDRPLCMFRTKKDFCMTGRRVT Run BLAST on NCBI transcript from alignment at sc0000012:338409..339483+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001776 ID=TCONS_00001776|Name=TCONS_00001776|organism=Clytia hemisphaerica|type=transcript|length=1075bp|location=Sequence derived from alignment at sc0000012:338409..339483+ (Clytia hemisphaerica)
GGAATCACACCACTCATGCTGAAATCTTGTATCCACAACCAGCAATGTTT
CGTTTTACTTCGCGACATCATTCTCGAGGTTTGGGACAATGAATCTCCAC
CCGAATCCTGGGATACCGGTCTGCTgaaagttttgccaaaaaaaggaGAC
CTTAGTCTACCCGGCAACTATCGTGGCATCATGCTTTTGGTAGTTGCTTA
CAAAATCCTTGCCATACTTATCCATGATCGTTTACAGCCACTTGTCGAAT
CTCTAGACCATGAAGCACAATGTGGCTTCCGCTCAGGAAGGGGTTGTNAT
CATGCTTTTGGAAGTTGCTTACAAAATCCTTGCCATACTTATCCATGATC
GTTTACAGCCACTTGTCGAATCTCTAGACCATGAAGCACAATGTGGCTTC
CGCTCAGGAAGGGGTTGTTTAGACGCTATTTTTGCTGTGAATATGGCTAT
GAAAAAGCGTAGAGAACATAGTAAAGAAACATGGATTTTGTTCCTTGact
taagtaagtaagtctgcgaccgcagtcggaggcgacccgaaggcccctct
ttcgatagctatctacccgaaggtaggggagggcgccactctttctccct
ggatttctccaattacccttgatccttctcttaattgctgagcatcaagc
agagaggcatcaagtaccattttgggaatctttggtatgacccggctggg
ggttgaacccacaaccttgcgaaccgtagccggatgctctaccactgtac
tacggtcgctatGACTTAGTCAAGGCCTTTGACCGAGTCCCTAGAGATAT
GTTGTGGGAAGTGTTAGAAAAATTTGGCGCACCCATCAAGTTAATTCGAC
TGATAAAATCACTTCATGATAATTTCAAAGTAgattttgaaatagaaaat
tgcAAGCATTCAATCAACTGTACCATCGGAGTTAAACAAGGGGACATTCT
TGGGCCTGTACTCTTCGTTGTTTACATAGCGGCTATAATGATCACTTGGC
GTAAACTGCACGATCGACCTCTTTGTATGTTCAGAACCAAGAAGGATTTC
TGTATGACAGGGAGACGAGTTACTG Coding sequence (CDS) from alignment at sc0000012:338409..339483+ >TCONS_00001776 ID=TCONS_00001776|Name=TCONS_00001776|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000012:338409..339483+ (Clytia hemisphaerica)
ATGAAGCACAATGTGGCTTCCGCTCAGGAAGGGGTTGTNATCATGCTTTT
GGAAGTTGCTTACAAAATCCTTGCCATACTTATCCATGATCGTTTACAGC
CACTTGTCGAATCTCTAGACCATGAAGCACAATGTGGCTTCCGCTCAGGA
AGGGGTTGTTTAGACGCTATTTTTGCTGTGAATATGGCTATGAAAAAGCG
TAGAGAACATAGTAAAGAAACATGGATTTTGTTCCTTGacttaaTCAAGG
CCTTTGACCGAGTCCCTAGAGATATGTTGTGGGAAGTGTTAGAAAAATTT
GGCGCACCCATCAAGTTAATTCGACTGATAAAATCACTTCATGATAATTT
CAAAGTAgattttgaaatagaaaattgcAAGCATTCAATCAACTGTACCA
TCGGAGTTAAACAAGGGGACATTCTTGGGCCTGTACTCTTCGTTGTTTAC
ATAGCGGCTATAATGATCACTTGGCGTAAACTGCACGATCGACCTCTTTG
TATGTTCAGAACCAAGAAGGATTTCTGTATGACAGGGAGACGAGTTACTA
TGAAGCACAATGTGGCTTCCGCTCAGGAAGGGGTTGTNATCATGCTTTTG
GAAGTTGCTTACAAAATCCTTGCCATACTTATCCATGATCGTTTACAGCC
ACTTGTCGAATCTCTAGACCATGAAGCACAATGTGGCTTCCGCTCAGGAA
GGGGTTGTTTAGACGCTATTTTTGCTGTGAATATGGCTATGAAAAAGCGT
AGAGAACATAGTAAAGAAACATGGATTTTGTTCCTTGacttaaTCAAGGC
CTTTGACCGAGTCCCTAGAGATATGTTGTGGGAAGTGTTAGAAAAATTTG
GCGCACCCATCAAGTTAATTCGACTGATAAAATCACTTCATGATAATTTC
AAAGTAgattttgaaatagaaaattgcAAGCATTCAATCAACTGTACCAT
CGGAGTTAAACAAGGGGACATTCTTGGGCCTGTACTCTTCGTTGTTTACA
TAGCGGCTATAATGATCACTTGGCGTAAACTGCACGATCGACCTCTTTGT
ATGTTCAGAACCAAGAAGGATTTCTGTATGACAGGGAGACGAGTTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001776-exon-sc0000012-1491911889:338409..338911 | TCONS_00001776-exon-sc0000012-1491911889:338409..338911 | Clytia hemisphaerica | exon |
| TCONS_00001776-exon-sc0000012-1510915933:338409..338911 | TCONS_00001776-exon-sc0000012-1510915933:338409..338911 | Clytia hemisphaerica | exon |
| TCONS_00001776-exon-sc0000012-1575043694:338409..338911 | TCONS_00001776-exon-sc0000012-1575043694:338409..338911 | Clytia hemisphaerica | exon |
| TCONS_00001776-exon-sc0000012-1491911889:339178..339483 | TCONS_00001776-exon-sc0000012-1491911889:339178..339483 | Clytia hemisphaerica | exon |
| TCONS_00001776-exon-sc0000012-1510915933:339178..339483 | TCONS_00001776-exon-sc0000012-1510915933:339178..339483 | Clytia hemisphaerica | exon |
| TCONS_00001776-exon-sc0000012-1575043694:339178..339483 | TCONS_00001776-exon-sc0000012-1575043694:339178..339483 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:338409..339483 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
