TCONS_00001763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001763
Unique NameTCONS_00001763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001763 ID=TCONS_00001763|Name=TCONS_00001763|organism=Clytia hemisphaerica|type=transcript|length=1749bp
CTTTGTGATGACATTATGGTATGGCAACTTTTCTTCACGACCATGACAAG
GCCTTGAATTAATTTGCATTTGCTTCCATAACATCTCAGATCATAATCAA
CAATCCTGAACAAAAGGTGAACACACCGAAAttgtgaaacaaaaaaattt
ataagaaaaaatttatttttgtagaTACCGAGACCCAGTTTTGACAGCCG
ACTTTCTGCCTTGCCTTCCCTTATTTTTGACGAAAGTCGGCAGGAAGTCG
TTTGTCTAAAGTCAATGTGATGCCTTCTTTTCGTCAATgcaatttcaatc
tttttttaagcaaagatttGAAACTGTAAACTTTCCGTCGATCTTCTACC
GTCTCTCGCATCGAAAGGAGGCAAAGCAAAAAGTCGATCGTCTAAACTAG
GTCTAACTATTTTCTAGCTattaatgtttttcattttcatcctcGAAGGT
TGTACATGCAACTACCATTACCATCCGCACATCGATACCATCATATTGGA
AATTCtcttgagatttttcaaaaagaacttGCAAATTTGGACAACGTCTT
GCTGGAAAGCATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTT
ATGTTCGTCAAGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAG
gactttgtgcaaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATC
AAAACACGACAAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGA
TCCAACAGACAGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCG
ACACCTGACGAACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAA
GACTGTAGAATCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATA
ATCCCTCTTCAACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAA
ATTGATGTACCTTCTAATCATAACCCTGACGACATGCTCACAGATGATCT
AAAGAAAGAGCTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACG
ATACCATCGCTCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTC
ACCAACTTCTCATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGC
TGCTTTAAATAATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAG
AGACAATAGATTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTT
GAAGTTCACTTAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGA
TGGTGAAAGTATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAA
CTCATCTAAGGATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACG
ACGGACCCGTCAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAAC
GTAGTCCACAATGCCCTGTCTCTAGGGTTTTGTTATTCGTATCCAATCTC
CTTCTGTGATTACACAATGTCTACCTTGAAGAAGTTACCGTCGTATTTTC
TTGATATATGAAGATTGcacaacatatttttttatgatcCAAGTATGTGG
CATAATATGGCGGTTGCTTCTTCAGGCACACGCATACTTTTGTACCATAT
CTGCTTTATTGtaaataaaatttgtttataATTGACAActtcatttttga
gaaaaatattgtgTGTAGAGTATattaatgaaaaaagaaaatttctctC
Run BLAST on NCBI

transcript from alignment at sc0000012:154279..157085+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001763 ID=TCONS_00001763|Name=TCONS_00001763|organism=Clytia hemisphaerica|type=transcript|length=2807bp|location=Sequence derived from alignment at sc0000012:154279..157085+ (Clytia hemisphaerica)
CTTTGTGATGACATTATGGTATGGCAACTTTTCTTCACGACCATGACAAG
GCCTTGAATTAATTTGCATTTGCTTCCATAACATCTCAGATCATAATCAA
CAATCCTGAACAAAAGGTGAACACACCGAAAttgtgaaacaaaaaaattt
ataagaaaaaatttatttttgtagaTACCGAGACCCAGTTTTGACAGCCG
ACTTTCTGCCTTGCCTTCCCTTATTTTTGACGAAAGTCGGCAGGAAGTCG
TTTGTCTAAAGTCAATGTGATGCCTTCTTTTCGTCAATgcaatttcaatc
tttttttaagcaaagatttGAAACTGTAAACTTTCCGTCGATCTTCTACC
GTCTCTCGCATCGAAAGGAGGCAAAGCAAAAAGTCGATCGTCTAAACTAG
GTCTAACTATTTTCTAGCTattaatgtttttcattttcatcctcGAAGGT
TGTACATGCAACTACCATTACCATCCGCACATCGATACCATCATATTGGA
AATTCtcttgagatttttcaaaaagaacttGCAAATTTGGACAACGTCTT
GCTGGAAAGCATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTT
ATGTTCGTCAAGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAG
GTATTCATGCattttttaatctcaaaatatatttcaatattAAGGGGAAT
CTTAGAAATTGAGAGAAAACCTATTCAGAAAAGCtttttggaattatttt
caaaatgtcactAACTTTAGGAAAACTCTGGTGGTTATTATTTCCAGATC
TCTTTTACcagaaatgtttgatttttaaagtttcGACTTGACTGAAGCTT
GACTTTTTCATGGAGAACATTGGCcttattttgttcaaaaaatcaaagaa
aaatcatCAGCTATTagaattttaaagattattttgtaAAACTAGTCACC
ACCAGTTGAACACATCAAAGATATTCATGCGATATTTATATTTTGTcagg
actttgtgcaaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCA
AAACACGACAAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGAT
CCAACAGACAGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGA
CAGTAAGTGGTTTCAGTTCACTAAGGCTCCATCTATTATTATCGTTCAAA
ACATTAATAAACATAAACTAGTTTTATTGATTGAGACTAATTTGATTAGT
TAAGTATTCTGAATCTGGTTTTACAATTTGTCCAGGTTGACATTGCAAGA
AGCTCGATTTCAGAACGCTTCAGGGCTTTGAATCGGTTCGATCGAAATTG
GTCCTTTACTTTTAAGCGATAGAACCTCAAATTGATAATAAACtacttaa
atttttttcatgccATATCTTCTTTTTGGTATAGAGCTGTTCTTAGATAT
CTTATTTTTGATGCTACAAGAtatgaatgttttttttcaacaacAGCCTG
ACGAACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTGTA
GAATCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCCTC
TTCAACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGATG
TACCTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGAAA
GGTAAAaatagttttagtttttttattttcaatttttttagtttcaacTT
GTTTTCTAAGGGTGGGCAGACATTTGGAATAACGTCAGTCCCTGATTTTT
CAGGAATTGTCCTGGATACTTCTTTTAAAGTGCTTTTAGTGCTTTACGAT
GCAAAAACACTGCATTGGTTTGAAAGTTATGCCTTATAATCTGCAAGGTT
CATCTTTTTCATCCTCCTGAAAAATTCGACTTTCAAGAAATTCAAACACA
TTTTTATGTATTTCCCAAgttctttttctcaaaagtgtAGAACTTCTGAG
GCTACCTCTTGGGCTAATAATAATTCATCGCTAaacaaataattattttc
tttttcccgATTATAGAGCTGAAAACAGACGGAACACTTGTGCTAGATGA
TCAAAACGATACCATCGCTCTCACATTGACCGATAACCAACTGGAAAACT
TTTCAGTCACCAACTTCTCATACGACCAACTAGCACAACTTGCGAAAATT
GGATTAGCTGCTTTAAATAATGCTTCGAAAGAACCCGACGGTTCTTCGCC
TCAGCAAGAGACAATAGATTTTTCTCAACAACAAATCATGGACAATACAG
ATCAGGTTGAAGTTCACTTAGCCGACAAGGATGACCCAAATTCATTATCA
ACGACGGATGGTGAAAGTATACTAATTGTGACGCCGAGTGACGTTAACGA
CGATAAAACTCATCTAAGGATAATTGCTACTTCTGAAAATGCCGATCAGC
CGACTACGACGGACCCGTCAGCGATTCTGGCAAACGTCGTTGATATAGTG
GATGGAACGTAGTCCACAATGCCCTGTCTCTAGGGTTTTGTTATTCGTAT
CCAATCTCCTTCTGTGATTACACAATGTCTACCTTGAAGAAGTTACCGTC
GTATTTTCTTGATATATGAAGATTGcacaacatatttttttatgatcCAA
GTATGTGGCATAATATGGCGGTTGCTTCTTCAGGCACACGCATACTTTTG
TACCATATCTGCTTTATTGtaaataaaatttgtttataATTGACAActtc
atttttgagaaaaatattgtgTGTAGAGTATattaatgaaaaaagaaaat
ttctctC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000946XLOC_000946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001763-exon-sc0000012-1491911889:154279..154928TCONS_00001763-exon-sc0000012-1491911889:154279..154928Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1510915933:154279..154928TCONS_00001763-exon-sc0000012-1510915933:154279..154928Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1575043694:154279..154928TCONS_00001763-exon-sc0000012-1575043694:154279..154928Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1491911889:155278..155430TCONS_00001763-exon-sc0000012-1491911889:155278..155430Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1510915933:155278..155430TCONS_00001763-exon-sc0000012-1510915933:155278..155430Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1575043694:155278..155430TCONS_00001763-exon-sc0000012-1575043694:155278..155430Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1491911889:155775..155979TCONS_00001763-exon-sc0000012-1491911889:155775..155979Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1510915933:155775..155979TCONS_00001763-exon-sc0000012-1510915933:155775..155979Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1575043694:155775..155979TCONS_00001763-exon-sc0000012-1575043694:155775..155979Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1491911889:156345..157085TCONS_00001763-exon-sc0000012-1491911889:156345..157085Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1510915933:156345..157085TCONS_00001763-exon-sc0000012-1510915933:156345..157085Clytia hemisphaericaexon
TCONS_00001763-exon-sc0000012-1575043694:156345..157085TCONS_00001763-exon-sc0000012-1575043694:156345..157085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:154279..157085 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.69275	2.95015	2.02282	2.05101	16.2137	12.9849	2.71089	3.40888	0.815509	1.59091	2.35401	0.882725	0.518397	0.952925	0.482605	1.13348	0.927859	1.03618	0.308237	0.532828	0.942644	1.08351	1.64873	1.49215	5.60782	5.78542	1.04924	1.09894	2.33696	2.62768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top