TCONS_00001754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001754
Unique NameTCONS_00001754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001754 ID=TCONS_00001754|Name=TCONS_00001754|organism=Clytia hemisphaerica|type=transcript|length=516bp
gcttttactcgaaatttttatgctTTTGTTACGGTACATGACCTTCATTT
CTGGTTGGTTGAAATTTATcaacactaataaagttattaaCTGTAAGTTG
TAAATAAGTAACATGATAAtgaaatcacgtgaactttttcgagtaatcac
gtGTAATTTTGCGACCCGTTTATTCAGGAGCACAGCGTACCAAATGTTGA
CAGATGAGTAAAGTTGGTGTTAAATGaaatcaaacattttcaaaataatt
gtgCAACAGCAAGACATGAAACCATCGCCGCACCATCTCGTTGGGATGCT
AGAGTCCTTGAATATACAAAGGGCACCTCCTTGACATTAACTTAAATTTT
TGATTGTCTTCTCTTCAAAACAACCCATTAATGGAAATATTACGCAATTT
TATAAAAGGTTATTCCAGTGACcttaaaaccatttaaaatatCCAATTAC
TGTAGATTTATACAAAAATATTGGTAAACTTTTATGTAAAACTTAtggtg
aaaatcttgaaaaaag
Run BLAST on NCBI

transcript from alignment at sc0000011:1155365..1155880

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001754 ID=TCONS_00001754|Name=TCONS_00001754|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at sc0000011:1155365..1155880 (Clytia hemisphaerica)
cttttttcaagattttcaccaTAAGTTTTACATAAAAGTTTACCAATATT
TTTGTATAAATCTACAGTAATTGGatattttaaatggttttaagGTCACT
GGAATAACCTTTTATAAAATTGCGTAATATTTCCATTAATGGGTTGTTTT
GAAGAGAAGACAATCAAAAATTTAAGTTAATGTCAAGGAGGTGCCCTTTG
TATATTCAAGGACTCTAGCATCCCAACGAGATGGTGCGGCGATGGTTTCA
TGTCTTGCTGTTGcacaattattttgaaaatgtttgatttCATTTAACAC
CAACTTTACTCATCTGTCAACATTTGGTACGCTGTGCTCCTGAATAAACG
GGTCGCAAAATTACacgtgattactcgaaaaagttcacgtgatttcaTTA
TCATGTTACTTATTTACAACTTACAGttaataactttattagtgttgATA
AATTTCAACCAACCAGAAATGAAGGTCATGTACCGTAACAAAagcataaa
aatttcgagtaaaagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000939XLOC_000939Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001754-exon-sc0000011-1491911889:1155365..1155880TCONS_00001754-exon-sc0000011-1491911889:1155365..1155880Clytia hemisphaericaexon
TCONS_00001754-exon-sc0000011-1510915933:1155365..1155880TCONS_00001754-exon-sc0000011-1510915933:1155365..1155880Clytia hemisphaericaexon
TCONS_00001754-exon-sc0000011-1575043694:1155365..1155880TCONS_00001754-exon-sc0000011-1575043694:1155365..1155880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:1155365..1155880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.128012	0	0	0.445722	0.139093	0.292147	0	0	0.230892	0.691714	0.478901	1.57489	0.422524	0	0.0889185	0.245691	0.771295	0.558663	0.980986	1.32502	1.44556	1.11667	1.88247	98.8786	58.3437	0.769593	1.30682
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top