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TCONS_00001752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001752
Unique NameTCONS_00001752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001752 ID=TCONS_00001752|Name=TCONS_00001752|organism=Clytia hemisphaerica|type=transcript|length=1863bp
ATTGGATTTTGATAAATATTCTGATTTTTAAGATTGCAGATTAATTCAAA
AAGTGAtacaatttcataaaatttataGAATACATGTTACAGTATATATT
TACACTAAAAATAATGattgttttaaaataaaaacccttattttttcaat
atttagtATGACCTGTATGGTTTATCTGCTTGCAGGAAAACCATCGCGAT
ACTAATTAAAAACCAtcgtcagaaaaaaaaatcagttctACTACTGCTTC
AAGGAAGCGTTAATTTTGTTTCCCTTAAGCTAAAGGAATTAAATTTGTAC
TGTAATGTCacttttaaaatctaaaaaataaatctataaaaaaaatcaag
ctaaaaatgaagatctttgACAAATACTGTTACATAATCGATCAACTTCA
TTGGTTTCTAGACCAAGCTctaacaaatcattttcatcacattgcattaa
atttcgaaaatcaattttctcgTTAATGAATAATTCTTCGTATTTCTCAA
GTTGCGAGTCTTTCAATAATGTTGCGACAGTCTCAAAATCACCGTCTTTG
GAATATCTGCTATCGTCGCTACTCACACTACCAGTAAAGTTattattgaa
ttgaaatttattctttttaaCAATGGTTCGCATACGAACTATAGTGTTTG
TCTCATTTGGGCTACCCATGATAGTTTGTCCGAGTTCTTTCATCAGGGAG
GTCGGTTTAGCCGTATAACGGGGATAATCATCTTCAGAATTTTGCTTGAC
CAATAATTTTATgtcttttttcttgattttggaTTTCAATTTTGCTGGTT
TAACTCGCTTAATACCAGCCATTGAGTAAGGGAGACTGACCATGTACTCC
ATCTGATGATGTAAAGTtggtatgatttttttctcgaCTTGAGTAAGTTC
AGTTTCTTTAAGCATATCAACGGGAATGCCTCCTAAGAGAATTTCACAGA
AAACGTTCATCGTTAACGGGAATACGTGTAAAATAAATTCACCTTCACAT
TGCGAACTAGCTAAAACTAATTTCTCTGTTTTCTTGCGTTCCGCTAATAA
AGTTTCACCGGTTAGTCCGGTATTTTGCATGAAAGATACCGGGAATGTTT
TCATACAGGGTGTGATTAATAACGGAACTTCTTCCTTCTTCAATTCAACC
AATTTCTGTTGCTTGGATTCATACGGCGAGTCAACTTTATAAAATTCACC
TCGAATATTTATGGGTAAGAAAACCATTAATCTACCGGGATGCACTTCGA
CTGATAAatattcattttcatctttttcatcatcttcatcaactagaatt
tgaaaaatggttCCCGGGTGATAAGCGCATCCTTCGTAATTAAACCCGCG
TGTGACCACGACCCATTCAACATTATCTGAACGGTGATTGGCTACTAAGT
CACCAATAGTGTGATAAGGTGCTTGGTCATGTACCAATATATTTTCTACG
CATGCGTCCAAATCAACGGGGATCTCGACTGTCTCGCCTGTACTCGTTTT
AATACATTCCAACTTGACGACTTCTAAAATTTCATGCATCGTGAGAATGT
CACCACGGTTGATATCTCCCGATAGGTCACCATCCAACATCTTCACTGTC
AGAGGGGTTCCAACTTCCTCAGCTGCGATATGTAGAAACGAAGTTGGGTT
ACGATAATAATACAGACCAGATTTATTGACCGGGCTAATCAACGAAAAAG
CACCGTCTGATATTTTACGATTGATACGATGTCCTTTAGAAATGGTCCCC
ATTTTGGTGGGACCTTTCGATAAGGTTGTTGTCATATTCTTGAATGATTC
TTCACggaaaacaaattttcttcaaatatttcaatgtttCTTTCTCTAAA
TCCGAatacaaaa
Run BLAST on NCBI

protein sequence of TCONS_00001752-protein

>TCONS_00001752-protein ID=TCONS_00001752-protein|Name=TCONS_00001752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
MTTTLSKGPTKMGTISKGHRINRKISDGAFSLISPVNKSGLYYYRNPTSF
LHIAAEEVGTPLTVKMLDGDLSGDINRGDILTMHEILEVVKLECIKTSTG
ETVEIPVDLDACVENILVHDQAPYHTIGDLVANHRSDNVEWVVVTRGFNY
EGCAYHPGTIFQILVDEDDEKDENEYLSVEVHPGRLMVFLPINIRGEFYK
VDSPYESKQQKLVELKKEEVPLLITPCMKTFPVSFMQNTGLTGETLLAER
KKTEKLVLASSQCEGEFILHVFPLTMNVFCEILLGGIPVDMLKETELTQV
EKKIIPTLHHQMEYMVSLPYSMAGIKRVKPAKLKSKIKKKDIKLLVKQNS
EDDYPRYTAKPTSLMKELGQTIMGSPNETNTIVRMRTIVKKNKFQFNNNF
TGSVSSDDSRYSKDGDFETVATLLKDSQLEKYEELFINEKIDFRNLMQCD
ENDLLELGLETNEVDRLCNSICQRSSFLA
Run BLAST on NCBI

transcript from alignment at sc0000011:990579..992441

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001752 ID=TCONS_00001752|Name=TCONS_00001752|organism=Clytia hemisphaerica|type=transcript|length=1863bp|location=Sequence derived from alignment at sc0000011:990579..992441 (Clytia hemisphaerica)
ttttgtatTCGGATTTAGAGAAAGaaacattgaaatatttgaagaaaatt tgttttccGTGAAGAATCATTCAAGAATATGACAACAACCTTATCGAAAG GTCCCACCAAAATGGGGACCATTTCTAAAGGACATCGTATCAATCGTAAA ATATCAGACGGTGCTTTTTCGTTGATTAGCCCGGTCAATAAATCTGGTCT GTATTATTATCGTAACCCAACTTCGTTTCTACATATCGCAGCTGAGGAAG TTGGAACCCCTCTGACAGTGAAGATGTTGGATGGTGACCTATCGGGAGAT ATCAACCGTGGTGACATTCTCACGATGCATGAAATTTTAGAAGTCGTCAA GTTGGAATGTATTAAAACGAGTACAGGCGAGACAGTCGAGATCCCCGTTG ATTTGGACGCATGCGTAGAAAATATATTGGTACATGACCAAGCACCTTAT CACACTATTGGTGACTTAGTAGCCAATCACCGTTCAGATAATGTTGAATG GGTCGTGGTCACACGCGGGTTTAATTACGAAGGATGCGCTTATCACCCGG Gaaccatttttcaaattctagttgatgaagatgatgaaaaagatgaaaat gaatatTTATCAGTCGAAGTGCATCCCGGTAGATTAATGGTTTTCTTACC CATAAATATTCGAGGTGAATTTTATAAAGTTGACTCGCCGTATGAATCCA AGCAACAGAAATTGGTTGAATTGAAGAAGGAAGAAGTTCCGTTATTAATC ACACCCTGTATGAAAACATTCCCGGTATCTTTCATGCAAAATACCGGACT AACCGGTGAAACTTTATTAGCGGAACGCAAGAAAACAGAGAAATTAGTTT TAGCTAGTTCGCAATGTGAAGGTGAATTTATTTTACACGTATTCCCGTTA ACGATGAACGTTTTCTGTGAAATTCTCTTAGGAGGCATTCCCGTTGATAT GCTTAAAGAAACTGAACTTACTCAAGtcgagaaaaaaatcataccaACTT TACATCATCAGATGGAGTACATGGTCAGTCTCCCTTACTCAATGGCTGGT ATTAAGCGAGTTAAACCAGCAAAATTGAAAtccaaaatcaagaaaaaaga cATAAAATTATTGGTCAAGCAAAATTCTGAAGATGATTATCCCCGTTATA CGGCTAAACCGACCTCCCTGATGAAAGAACTCGGACAAACTATCATGGGT AGCCCAAATGAGACAAACACTATAGTTCGTATGCGAACCATTGttaaaaa gaataaatttcaattcaataatAACTTTACTGGTAGTGTGAGTAGCGACG ATAGCAGATATTCCAAAGACGGTGATTTTGAGACTGTCGCAACATTATTG AAAGACTCGCAACTTGAGAAATACGAAGAATTATTCATTAAcgagaaaat tgattttcgaaatttaatgcaatgtgatgaaaatgatttgttagAGCTTG GTCTAGAAACCAATGAAGTTGATCGATTATGTAACAGTATTTGTcaaaga tcttcatttttagcttgattttttttatagatttattttttagattttaa aagtGACATTACAGTACAAATTTAATTCCTTTAGCTTAAGGGAAACAAAA TTAACGCTTCCTTGAAGCAGTAGTagaactgatttttttttctgacgaTG GTTTTTAATTAGTATCGCGATGGTTTTCCTGCAAGCAGATAAACCATACA GGTCATactaaatattgaaaaaataagggtttttattttaaaacaatCAT TATTTTTAGTGTAAATATATACTGTAACATGTATTCtataaattttatga aattgtaTCACTTTTTGAATTAATCTGCAATCTTAAAAATCAGAATATTT ATCAAAATCCAAT

Coding sequence (CDS) from alignment at sc0000011:990579..992441

>TCONS_00001752 ID=TCONS_00001752|Name=TCONS_00001752|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at sc0000011:990579..992441 (Clytia hemisphaerica)
ATGACAACAACCTTATCGAAAGGTCCCACCAAAATGGGGACCATTTCTAA
AGGACATCGTATCAATCGTAAAATATCAGACGGTGCTTTTTCGTTGATTA
GCCCGGTCAATAAATCTGGTCTGTATTATTATCGTAACCCAACTTCGTTT
CTACATATCGCAGCTGAGGAAGTTGGAACCCCTCTGACAGTGAAGATGTT
GGATGGTGACCTATCGGGAGATATCAACCGTGGTGACATTCTCACGATGC
ATGAAATTTTAGAAGTCGTCAAGTTGGAATGTATTAAAACGAGTACAGGC
GAGACAGTCGAGATCCCCGTTGATTTGGACGCATGCGTAGAAAATATATT
GGTACATGACCAAGCACCTTATCACACTATTGGTGACTTAGTAGCCAATC
ACCGTTCAGATAATGTTGAATGGGTCGTGGTCACACGCGGGTTTAATTAC
GAAGGATGCGCTTATCACCCGGGaaccatttttcaaattctagttgatga
agatgatgaaaaagatgaaaatgaatatTTATCAGTCGAAGTGCATCCCG
GTAGATTAATGGTTTTCTTACCCATAAATATTCGAGGTGAATTTTATAAA
GTTGACTCGCCGTATGAATCCAAGCAACAGAAATTGGTTGAATTGAAGAA
GGAAGAAGTTCCGTTATTAATCACACCCTGTATGAAAACATTCCCGGTAT
CTTTCATGCAAAATACCGGACTAACCGGTGAAACTTTATTAGCGGAACGC
AAGAAAACAGAGAAATTAGTTTTAGCTAGTTCGCAATGTGAAGGTGAATT
TATTTTACACGTATTCCCGTTAACGATGAACGTTTTCTGTGAAATTCTCT
TAGGAGGCATTCCCGTTGATATGCTTAAAGAAACTGAACTTACTCAAGtc
gagaaaaaaatcataccaACTTTACATCATCAGATGGAGTACATGGTCAG
TCTCCCTTACTCAATGGCTGGTATTAAGCGAGTTAAACCAGCAAAATTGA
AAtccaaaatcaagaaaaaagacATAAAATTATTGGTCAAGCAAAATTCT
GAAGATGATTATCCCCGTTATACGGCTAAACCGACCTCCCTGATGAAAGA
ACTCGGACAAACTATCATGGGTAGCCCAAATGAGACAAACACTATAGTTC
GTATGCGAACCATTGttaaaaagaataaatttcaattcaataatAACTTT
ACTGGTAGTGTGAGTAGCGACGATAGCAGATATTCCAAAGACGGTGATTT
TGAGACTGTCGCAACATTATTGAAAGACTCGCAACTTGAGAAATACGAAG
AATTATTCATTAAcgagaaaattgattttcgaaatttaatgcaatgtgat
gaaaatgatttgttagAGCTTGGTCTAGAAACCAATGAAGTTGATCGATT
ATGTAACAGTATTTGTcaaagatcttcatttttagcttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000937XLOC_000937Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001752-proteinTCONS_00001752-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001752-exon-sc0000011-1491911889:990579..992441TCONS_00001752-exon-sc0000011-1491911889:990579..992441Clytia hemisphaericaexon
TCONS_00001752-exon-sc0000011-1510915933:990579..992441TCONS_00001752-exon-sc0000011-1510915933:990579..992441Clytia hemisphaericaexon
TCONS_00001752-exon-sc0000011-1575043694:990579..992441TCONS_00001752-exon-sc0000011-1575043694:990579..992441Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:990579..992441 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128698 0.188251 0.0971456 0 1.15704 0.960026 1.84765 1.98792 1.31949 1.07468 0.999644 2.75707 19.7149 15.1112 25.5776 20.3251 3.33315 13.2034 2.64497 3.62673 0.103694 0.151735 0.688625 0.402467 0.0921182 0.390513 0.0294117 0.031389 0.214267 0.315328
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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