TCONS_00001748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001748
Unique NameTCONS_00001748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001748 ID=TCONS_00001748|Name=TCONS_00001748|organism=Clytia hemisphaerica|type=transcript|length=366bp
CCCTGAACACTTTCATATCAGTGAAAATGATTTaataagattttcattaa
tCTAGCAAAAAGATAAACATAAGAACAACACtattgaataattttaaaat
aaatgttATATCAAAAATAGTTATAAAAcccaaaattaaatatatttaGT
TGTGTATAAAATGCTTATTGCGAAAAAACTAATATTTTCGATAGAGTAag
agtaatttatgaaaatcaaTCATCGTCATTGTAATCCACTCGTCCATAAC
CAGACAGAATAGATTGATACTGTGGTGAAAAATTCGTATAGGTTTATTAT
ACATTGTACAAACAAAGTTCAACTTTCATTATTGTTGTTTAATTTACTCG
ATCCAATAATTGTTAT
Run BLAST on NCBI

transcript from alignment at sc0000011:857791..858156

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001748 ID=TCONS_00001748|Name=TCONS_00001748|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at sc0000011:857791..858156 (Clytia hemisphaerica)
ATAACAATTATTGGATCGAGTAAATTAAACAACAATAATGAAAGTTGAAC
TTTGTTTGTACAATGTATAATAAACCTATACGAATTTTTCACCACAGTAT
CAATCTATTCTGTCTGGTTATGGACGAGTGGATTACAATGACGATGAttg
attttcataaattactctTACTCTATCGAAAATATTAGTTTTTTCGCAAT
AAGCATTTTATACACAACtaaatatatttaattttgggTTTTATAACTAT
TTTTGATATaacatttattttaaaattattcaataGTGTTGTTCTTATGT
TTATCTTTTTGCTAGattaatgaaaatcttattAAATCATTTTCACTGAT
ATGAAAGTGTTCAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000933XLOC_000933Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001748-exon-sc0000011-1491911889:857791..858156TCONS_00001748-exon-sc0000011-1491911889:857791..858156Clytia hemisphaericaexon
TCONS_00001748-exon-sc0000011-1510915933:857791..858156TCONS_00001748-exon-sc0000011-1510915933:857791..858156Clytia hemisphaericaexon
TCONS_00001748-exon-sc0000011-1575043694:857791..858156TCONS_00001748-exon-sc0000011-1575043694:857791..858156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:857791..858156 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.815955	0	0	0	0	3.97271	1.61869	0.943608	0.290361	0.678548	3.71895	4.69141	4.26891	1.46466	1.33556	0.321153	0	1.25332	0	15.5641	10.2971	10.3718	8.26847
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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