TCONS_00001747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001747
Unique NameTCONS_00001747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2054

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001747 ID=TCONS_00001747|Name=TCONS_00001747|organism=Clytia hemisphaerica|type=transcript|length=2054bp
agaCAGTGAATTGCGTCAATTAGGTATATAGCATTGAAAGCAAACATTTT
GGAGGATaatatttctttgtgttttcatcAAGTGAGCGATTATTTTCTAA
TCATTTTACATTGAAAAAAAGTGCTGAGATAAAAGCTGACACtgttatca
atttttttagttcaaattgTACTTTCGGAAGAGAATAAGACGGAATATAT
TATAGAGAAAATCCTCATTTTggaacaaaaaaattgagtgtatttttttg
attttgaatataTGAAACATGATGGATCTTAGCAGTATTCCTTGGGACGA
TGACCCTCTTGTGTTTAATTTTCATAACGAAATTCCTGGCAAAGTCAAAA
TGCATACCCGAAGTATGAAATTGGAGGATTGGGTCAAGATTGATAAATCA
TATCCAGACCAGATGAAAGAAAGACAACGATTATGGAAATTGTACCCCGA
ACAAATCTACATGAGTCAAACAGATGACTCTGCTGTAGCTTGTAAATGGG
AGCTTTTTGAAATGCTTGTTGATTACCTACCGGAAAGATTTccgtatatt
tttgaaaaacggGAATATTCAATTTACAATAAAGTATTAGATGAAGAAGT
ATCAACTGATCGGAATGATCCGGTATGTCCGTTAATACGTGCTGGACGTC
TGACGCAAGAAGATTGGGCGATCATCGAATGGGATGATACGGAACAAGGG
TACATATTGACTTCCGGTATTGTTTATTTTCCCATGCGTTGGTCACTCAa
ggataaatttcaaaaagggATCGCAGGTATCCATATACCTGTTAAACCTT
TCATGGAAAACCTTGTCAAACATGTTTATGAtgtcttcaaaaaaatgaaa
cctGAATGCCCCTTATGGCGTGCTAATTGGGCCGTTTTCAACGACTTAGA
AGGGCCGCTTGATTTATTCACACCTTCAGGATCTCTCGATCGAAATGATG
AGAATAAGACGACCATTTTTGAGGGTGATGAAACCGGAAAAGTTCTCACG
TTCCGGGCTGAATACCAAACATTACGGAAATTACCGAAAACGAAATGTAT
TGTGTTTGGGATTCGAACCTACCAAAGATACTTAGAAGAATTCAAAGAGC
TTCCTGAGTCAGATGCTAAAGGTCTAATCACAGCAATCCAAAACCTGAAC
GACGATTTTGTGATGTATAAAGGAGCAATGTTTTGGAAAGACGCAGCTAT
CAAGTACCTTCAGTATGCTATCGATTGGCGCAAACCGAAGTTGAACAAAT
CAAGTGGATATGGTTGGTATTTGCCGGTTACAATTACCCTGGGGATTGCT
CTTACAGGGTATTTGGTACATCGTGCTGTttctattaataattaaaaAGA
ACAATCAAAACACATATTTAAAATATCAGAATACGAAACTAGCAGTAACT
CGAgatgaatgttttgatttaatgtctggatttttttttatttggttttt
aaTGTAATTGAAAGTTTATATCTGTACATCTGTCAACGAGTTCgaataac
aataataacattCCATTGAAACTGCGTGGGGTATATACTTTCTAACAAAC
AATCAATGTCTTTGTATTGAGGAGTAGTATAATCAGCACCTTTAGGGTGA
TTAAACTTTGATTAAAAAATGAAGCAGGCCTTTCTTGGactgattttgaa
aatatgatatcttTTTAAACCAAAATTGGTTAACTCCCATGGGAGGCACC
CGATTAAATacgaccgtacgtgcggcccaatcaggcctttgaaatcgcac
ccttatacagggtgtccctagtctgaatcgcagacctctacaaaaccaca
ggtagtataggtctgcttaatgatctaccaaccgctttccggttcgcaaa
ggaaatcttggcgactaatttgattgacattgatgtgcgcgcaaaaacga
tcgtttcgaacgttttcaatggaatgtttacatttgaaattcgaatccca
ggtcagaaaaacaaaacagaaaaaagataaaaaaacaatctgatgcgcgc
attatgtacagtctgtagatttatttttgacttttgcttttataagatat
ctgg
Run BLAST on NCBI

protein sequence of TCONS_00001747-protein

>TCONS_00001747-protein ID=TCONS_00001747-protein|Name=TCONS_00001747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MMDLSSIPWDDDPLVFNFHNEIPGKVKMHTRSMKLEDWVKIDKSYPDQMK
ERQRLWKLYPEQIYMSQTDDSAVACKWELFEMLVDYLPERFPYIFEKREY
SIYNKVLDEEVSTDRNDPVCPLIRAGRLTQEDWAIIEWDDTEQGYILTSG
IVYFPMRWSLKDKFQKGIAGIHIPVKPFMENLVKHVYDVFKKMKPECPLW
RANWAVFNDLEGPLDLFTPSGSLDRNDENKTTIFEGDETGKVLTFRAEYQ
TLRKLPKTKCIVFGIRTYQRYLEEFKELPESDAKGLITAIQNLNDDFVMY
KGAMFWKDAAIKYLQYAIDWRKPKLNKSSGYGWYLPVTITLGIALTGYLV
HRAVSINN
Run BLAST on NCBI

transcript from alignment at sc0000011:810618..812671

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001747 ID=TCONS_00001747|Name=TCONS_00001747|organism=Clytia hemisphaerica|type=transcript|length=2054bp|location=Sequence derived from alignment at sc0000011:810618..812671 (Clytia hemisphaerica)
ccagatatcttataaaagcaaaagtcaaaaataaatctacagactgtaca taatgcgcgcatcagattgtttttttatcttttttctgttttgtttttct gacctgggattcgaatttcaaatgtaaacattccattgaaaacgttcgaa acgatcgtttttgcgcgcacatcaatgtcaatcaaattagtcgccaagat ttcctttgcgaaccggaaagcggttggtagatcattaagcagacctatac tacctgtggttttgtagaggtctgcgattcagactagggacaccctgtat aagggtgcgatttcaaaggcctgattgggccgcacgtacggtcgtATTTA ATCGGGTGCCTCCCATGGGAGTTAACCAATTTTGGTTTAAAaagatatca tattttcaaaatcagtCCAAGAAAGGCCTGCTTCATTTTTTAATCAAAGT TTAATCACCCTAAAGGTGCTGATTATACTACTCCTCAATACAAAGACATT GATTGTTTGTTAGAAAGTATATACCCCACGCAGTTTCAATGGaatgttat tattgttattcGAACTCGTTGACAGATGTACAGATATAAACTTTCAATTA CAttaaaaaccaaataaaaaaaaatccagacattaaatcaaaacattcat cTCGAGTTACTGCTAGTTTCGTATTCTGATATTTTAAATATGTGTTTTGA TTGTTCTttttaattattaatagaaACAGCACGATGTACCAAATACCCTG TAAGAGCAATCCCCAGGGTAATTGTAACCGGCAAATACCAACCATATCCA CTTGATTTGTTCAACTTCGGTTTGCGCCAATCGATAGCATACTGAAGGTA CTTGATAGCTGCGTCTTTCCAAAACATTGCTCCTTTATACATCACAAAAT CGTCGTTCAGGTTTTGGATTGCTGTGATTAGACCTTTAGCATCTGACTCA GGAAGCTCTTTGAATTCTTCTAAGTATCTTTGGTAGGTTCGAATCCCAAA CACAATACATTTCGTTTTCGGTAATTTCCGTAATGTTTGGTATTCAGCCC GGAACGTGAGAACTTTTCCGGTTTCATCACCCTCAAAAATGGTCGTCTTA TTCTCATCATTTCGATCGAGAGATCCTGAAGGTGTGAATAAATCAAGCGG CCCTTCTAAGTCGTTGAAAACGGCCCAATTAGCACGCCATAAGGGGCATT CaggtttcatttttttgaagacaTCATAAACATGTTTGACAAGGTTTTCC ATGAAAGGTTTAACAGGTATATGGATACCTGCGATccctttttgaaattt atcctTGAGTGACCAACGCATGGGAAAATAAACAATACCGGAAGTCAATA TGTACCCTTGTTCCGTATCATCCCATTCGATGATCGCCCAATCTTCTTGC GTCAGACGTCCAGCACGTATTAACGGACATACCGGATCATTCCGATCAGT TGATACTTCTTCATCTAATACTTTATTGTAAATTGAATATTCccgttttt caaaaatatacggAAATCTTTCCGGTAGGTAATCAACAAGCATTTCAAAA AGCTCCCATTTACAAGCTACAGCAGAGTCATCTGTTTGACTCATGTAGAT TTGTTCGGGGTACAATTTCCATAATCGTTGTCTTTCTTTCATCTGGTCTG GATATGATTTATCAATCTTGACCCAATCCTCCAATTTCATACTTCGGGTA TGCATTTTGACTTTGCCAGGAATTTCGTTATGAAAATTAAACACAAGAGG GTCATCGTCCCAAGGAATACTGCTAAGATCCATCATGTTTCAtatattca aaatcaaaaaaatacactcaatttttttgttccAAAATGAGGATTTTCTC TATAATATATTCCGTCTTATTCTCTTCCGAAAGTAcaatttgaactaaaa aaattgataacaGTGTCAGCTTTTATCTCAGCACTTTTTTTCAATGTAAA ATGATTAGAAAATAATCGCTCACTTgatgaaaacacaaagaaatattATC CTCCAAAATGTTTGCTTTCAATGCTATATACCTAATTGACGCAATTCACT Gtct

Coding sequence (CDS) from alignment at sc0000011:810618..812671

>TCONS_00001747 ID=TCONS_00001747|Name=TCONS_00001747|organism=Clytia hemisphaerica|type=CDS|length=1077bp|location=Sequence derived from alignment at sc0000011:810618..812671 (Clytia hemisphaerica)
ttaattattaatagaaACAGCACGATGTACCAAATACCCTGTAAGAGCAA
TCCCCAGGGTAATTGTAACCGGCAAATACCAACCATATCCACTTGATTTG
TTCAACTTCGGTTTGCGCCAATCGATAGCATACTGAAGGTACTTGATAGC
TGCGTCTTTCCAAAACATTGCTCCTTTATACATCACAAAATCGTCGTTCA
GGTTTTGGATTGCTGTGATTAGACCTTTAGCATCTGACTCAGGAAGCTCT
TTGAATTCTTCTAAGTATCTTTGGTAGGTTCGAATCCCAAACACAATACA
TTTCGTTTTCGGTAATTTCCGTAATGTTTGGTATTCAGCCCGGAACGTGA
GAACTTTTCCGGTTTCATCACCCTCAAAAATGGTCGTCTTATTCTCATCA
TTTCGATCGAGAGATCCTGAAGGTGTGAATAAATCAAGCGGCCCTTCTAA
GTCGTTGAAAACGGCCCAATTAGCACGCCATAAGGGGCATTCaggtttca
tttttttgaagacaTCATAAACATGTTTGACAAGGTTTTCCATGAAAGGT
TTAACAGGTATATGGATACCTGCGATccctttttgaaatttatcctTGAG
TGACCAACGCATGGGAAAATAAACAATACCGGAAGTCAATATGTACCCTT
GTTCCGTATCATCCCATTCGATGATCGCCCAATCTTCTTGCGTCAGACGT
CCAGCACGTATTAACGGACATACCGGATCATTCCGATCAGTTGATACTTC
TTCATCTAATACTTTATTGTAAATTGAATATTCccgtttttcaaaaatat
acggAAATCTTTCCGGTAGGTAATCAACAAGCATTTCAAAAAGCTCCCAT
TTACAAGCTACAGCAGAGTCATCTGTTTGACTCATGTAGATTTGTTCGGG
GTACAATTTCCATAATCGTTGTCTTTCTTTCATCTGGTCTGGATATGATT
TATCAATCTTGACCCAATCCTCCAATTTCATACTTCGGGTATGCATTTTG
ACTTTGCCAGGAATTTCGTTATGAAAATTAAACACAAGAGGGTCATCGTC
CCAAGGAATACTGCTAAGATCCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000932XLOC_000932Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001747-proteinTCONS_00001747-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001747-exon-sc0000011-1491911889:810618..812671TCONS_00001747-exon-sc0000011-1491911889:810618..812671Clytia hemisphaericaexon
TCONS_00001747-exon-sc0000011-1510915933:810618..812671TCONS_00001747-exon-sc0000011-1510915933:810618..812671Clytia hemisphaericaexon
TCONS_00001747-exon-sc0000011-1575043694:810618..812671TCONS_00001747-exon-sc0000011-1575043694:810618..812671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:810618..812671 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.86055 4.73467 5.86356 5.74718 11.2262 9.41973 23.4653 23.3829 25.111 26.0729 14.686 10.8979 0.608119 0.42779 0.459069 0.457752 4.02337 3.60416 0.39042 0.471578 6.3559 5.61224 24.5827 21.4683 26.7367 20.5083 17.0359 11.6732 31.7644 29.88
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021848DUF3445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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