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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001747 ID=TCONS_00001747|Name=TCONS_00001747|organism=Clytia hemisphaerica|type=transcript|length=2054bp
agaCAGTGAATTGCGTCAATTAGGTATATAGCATTGAAAGCAAACATTTT
GGAGGATaatatttctttgtgttttcatcAAGTGAGCGATTATTTTCTAA
TCATTTTACATTGAAAAAAAGTGCTGAGATAAAAGCTGACACtgttatca
atttttttagttcaaattgTACTTTCGGAAGAGAATAAGACGGAATATAT
TATAGAGAAAATCCTCATTTTggaacaaaaaaattgagtgtatttttttg
attttgaatataTGAAACATGATGGATCTTAGCAGTATTCCTTGGGACGA
TGACCCTCTTGTGTTTAATTTTCATAACGAAATTCCTGGCAAAGTCAAAA
TGCATACCCGAAGTATGAAATTGGAGGATTGGGTCAAGATTGATAAATCA
TATCCAGACCAGATGAAAGAAAGACAACGATTATGGAAATTGTACCCCGA
ACAAATCTACATGAGTCAAACAGATGACTCTGCTGTAGCTTGTAAATGGG
AGCTTTTTGAAATGCTTGTTGATTACCTACCGGAAAGATTTccgtatatt
tttgaaaaacggGAATATTCAATTTACAATAAAGTATTAGATGAAGAAGT
ATCAACTGATCGGAATGATCCGGTATGTCCGTTAATACGTGCTGGACGTC
TGACGCAAGAAGATTGGGCGATCATCGAATGGGATGATACGGAACAAGGG
TACATATTGACTTCCGGTATTGTTTATTTTCCCATGCGTTGGTCACTCAa
ggataaatttcaaaaagggATCGCAGGTATCCATATACCTGTTAAACCTT
TCATGGAAAACCTTGTCAAACATGTTTATGAtgtcttcaaaaaaatgaaa
cctGAATGCCCCTTATGGCGTGCTAATTGGGCCGTTTTCAACGACTTAGA
AGGGCCGCTTGATTTATTCACACCTTCAGGATCTCTCGATCGAAATGATG
AGAATAAGACGACCATTTTTGAGGGTGATGAAACCGGAAAAGTTCTCACG
TTCCGGGCTGAATACCAAACATTACGGAAATTACCGAAAACGAAATGTAT
TGTGTTTGGGATTCGAACCTACCAAAGATACTTAGAAGAATTCAAAGAGC
TTCCTGAGTCAGATGCTAAAGGTCTAATCACAGCAATCCAAAACCTGAAC
GACGATTTTGTGATGTATAAAGGAGCAATGTTTTGGAAAGACGCAGCTAT
CAAGTACCTTCAGTATGCTATCGATTGGCGCAAACCGAAGTTGAACAAAT
CAAGTGGATATGGTTGGTATTTGCCGGTTACAATTACCCTGGGGATTGCT
CTTACAGGGTATTTGGTACATCGTGCTGTttctattaataattaaaaAGA
ACAATCAAAACACATATTTAAAATATCAGAATACGAAACTAGCAGTAACT
CGAgatgaatgttttgatttaatgtctggatttttttttatttggttttt
aaTGTAATTGAAAGTTTATATCTGTACATCTGTCAACGAGTTCgaataac
aataataacattCCATTGAAACTGCGTGGGGTATATACTTTCTAACAAAC
AATCAATGTCTTTGTATTGAGGAGTAGTATAATCAGCACCTTTAGGGTGA
TTAAACTTTGATTAAAAAATGAAGCAGGCCTTTCTTGGactgattttgaa
aatatgatatcttTTTAAACCAAAATTGGTTAACTCCCATGGGAGGCACC
CGATTAAATacgaccgtacgtgcggcccaatcaggcctttgaaatcgcac
ccttatacagggtgtccctagtctgaatcgcagacctctacaaaaccaca
ggtagtataggtctgcttaatgatctaccaaccgctttccggttcgcaaa
ggaaatcttggcgactaatttgattgacattgatgtgcgcgcaaaaacga
tcgtttcgaacgttttcaatggaatgtttacatttgaaattcgaatccca
ggtcagaaaaacaaaacagaaaaaagataaaaaaacaatctgatgcgcgc
attatgtacagtctgtagatttatttttgacttttgcttttataagatat
ctgg Run BLAST on NCBI protein sequence of TCONS_00001747-protein >TCONS_00001747-protein ID=TCONS_00001747-protein|Name=TCONS_00001747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MMDLSSIPWDDDPLVFNFHNEIPGKVKMHTRSMKLEDWVKIDKSYPDQMK
ERQRLWKLYPEQIYMSQTDDSAVACKWELFEMLVDYLPERFPYIFEKREY
SIYNKVLDEEVSTDRNDPVCPLIRAGRLTQEDWAIIEWDDTEQGYILTSG
IVYFPMRWSLKDKFQKGIAGIHIPVKPFMENLVKHVYDVFKKMKPECPLW
RANWAVFNDLEGPLDLFTPSGSLDRNDENKTTIFEGDETGKVLTFRAEYQ
TLRKLPKTKCIVFGIRTYQRYLEEFKELPESDAKGLITAIQNLNDDFVMY
KGAMFWKDAAIKYLQYAIDWRKPKLNKSSGYGWYLPVTITLGIALTGYLV
HRAVSINN Run BLAST on NCBI transcript from alignment at sc0000011:810618..812671 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001747 ID=TCONS_00001747|Name=TCONS_00001747|organism=Clytia hemisphaerica|type=transcript|length=2054bp|location=Sequence derived from alignment at sc0000011:810618..812671 (Clytia hemisphaerica)
ccagatatcttataaaagcaaaagtcaaaaataaatctacagactgtaca
taatgcgcgcatcagattgtttttttatcttttttctgttttgtttttct
gacctgggattcgaatttcaaatgtaaacattccattgaaaacgttcgaa
acgatcgtttttgcgcgcacatcaatgtcaatcaaattagtcgccaagat
ttcctttgcgaaccggaaagcggttggtagatcattaagcagacctatac
tacctgtggttttgtagaggtctgcgattcagactagggacaccctgtat
aagggtgcgatttcaaaggcctgattgggccgcacgtacggtcgtATTTA
ATCGGGTGCCTCCCATGGGAGTTAACCAATTTTGGTTTAAAaagatatca
tattttcaaaatcagtCCAAGAAAGGCCTGCTTCATTTTTTAATCAAAGT
TTAATCACCCTAAAGGTGCTGATTATACTACTCCTCAATACAAAGACATT
GATTGTTTGTTAGAAAGTATATACCCCACGCAGTTTCAATGGaatgttat
tattgttattcGAACTCGTTGACAGATGTACAGATATAAACTTTCAATTA
CAttaaaaaccaaataaaaaaaaatccagacattaaatcaaaacattcat
cTCGAGTTACTGCTAGTTTCGTATTCTGATATTTTAAATATGTGTTTTGA
TTGTTCTttttaattattaatagaaACAGCACGATGTACCAAATACCCTG
TAAGAGCAATCCCCAGGGTAATTGTAACCGGCAAATACCAACCATATCCA
CTTGATTTGTTCAACTTCGGTTTGCGCCAATCGATAGCATACTGAAGGTA
CTTGATAGCTGCGTCTTTCCAAAACATTGCTCCTTTATACATCACAAAAT
CGTCGTTCAGGTTTTGGATTGCTGTGATTAGACCTTTAGCATCTGACTCA
GGAAGCTCTTTGAATTCTTCTAAGTATCTTTGGTAGGTTCGAATCCCAAA
CACAATACATTTCGTTTTCGGTAATTTCCGTAATGTTTGGTATTCAGCCC
GGAACGTGAGAACTTTTCCGGTTTCATCACCCTCAAAAATGGTCGTCTTA
TTCTCATCATTTCGATCGAGAGATCCTGAAGGTGTGAATAAATCAAGCGG
CCCTTCTAAGTCGTTGAAAACGGCCCAATTAGCACGCCATAAGGGGCATT
CaggtttcatttttttgaagacaTCATAAACATGTTTGACAAGGTTTTCC
ATGAAAGGTTTAACAGGTATATGGATACCTGCGATccctttttgaaattt
atcctTGAGTGACCAACGCATGGGAAAATAAACAATACCGGAAGTCAATA
TGTACCCTTGTTCCGTATCATCCCATTCGATGATCGCCCAATCTTCTTGC
GTCAGACGTCCAGCACGTATTAACGGACATACCGGATCATTCCGATCAGT
TGATACTTCTTCATCTAATACTTTATTGTAAATTGAATATTCccgttttt
caaaaatatacggAAATCTTTCCGGTAGGTAATCAACAAGCATTTCAAAA
AGCTCCCATTTACAAGCTACAGCAGAGTCATCTGTTTGACTCATGTAGAT
TTGTTCGGGGTACAATTTCCATAATCGTTGTCTTTCTTTCATCTGGTCTG
GATATGATTTATCAATCTTGACCCAATCCTCCAATTTCATACTTCGGGTA
TGCATTTTGACTTTGCCAGGAATTTCGTTATGAAAATTAAACACAAGAGG
GTCATCGTCCCAAGGAATACTGCTAAGATCCATCATGTTTCAtatattca
aaatcaaaaaaatacactcaatttttttgttccAAAATGAGGATTTTCTC
TATAATATATTCCGTCTTATTCTCTTCCGAAAGTAcaatttgaactaaaa
aaattgataacaGTGTCAGCTTTTATCTCAGCACTTTTTTTCAATGTAAA
ATGATTAGAAAATAATCGCTCACTTgatgaaaacacaaagaaatattATC
CTCCAAAATGTTTGCTTTCAATGCTATATACCTAATTGACGCAATTCACT
Gtct Coding sequence (CDS) from alignment at sc0000011:810618..812671 >TCONS_00001747 ID=TCONS_00001747|Name=TCONS_00001747|organism=Clytia hemisphaerica|type=CDS|length=1077bp|location=Sequence derived from alignment at sc0000011:810618..812671 (Clytia hemisphaerica)
ttaattattaatagaaACAGCACGATGTACCAAATACCCTGTAAGAGCAA
TCCCCAGGGTAATTGTAACCGGCAAATACCAACCATATCCACTTGATTTG
TTCAACTTCGGTTTGCGCCAATCGATAGCATACTGAAGGTACTTGATAGC
TGCGTCTTTCCAAAACATTGCTCCTTTATACATCACAAAATCGTCGTTCA
GGTTTTGGATTGCTGTGATTAGACCTTTAGCATCTGACTCAGGAAGCTCT
TTGAATTCTTCTAAGTATCTTTGGTAGGTTCGAATCCCAAACACAATACA
TTTCGTTTTCGGTAATTTCCGTAATGTTTGGTATTCAGCCCGGAACGTGA
GAACTTTTCCGGTTTCATCACCCTCAAAAATGGTCGTCTTATTCTCATCA
TTTCGATCGAGAGATCCTGAAGGTGTGAATAAATCAAGCGGCCCTTCTAA
GTCGTTGAAAACGGCCCAATTAGCACGCCATAAGGGGCATTCaggtttca
tttttttgaagacaTCATAAACATGTTTGACAAGGTTTTCCATGAAAGGT
TTAACAGGTATATGGATACCTGCGATccctttttgaaatttatcctTGAG
TGACCAACGCATGGGAAAATAAACAATACCGGAAGTCAATATGTACCCTT
GTTCCGTATCATCCCATTCGATGATCGCCCAATCTTCTTGCGTCAGACGT
CCAGCACGTATTAACGGACATACCGGATCATTCCGATCAGTTGATACTTC
TTCATCTAATACTTTATTGTAAATTGAATATTCccgtttttcaaaaatat
acggAAATCTTTCCGGTAGGTAATCAACAAGCATTTCAAAAAGCTCCCAT
TTACAAGCTACAGCAGAGTCATCTGTTTGACTCATGTAGATTTGTTCGGG
GTACAATTTCCATAATCGTTGTCTTTCTTTCATCTGGTCTGGATATGATT
TATCAATCTTGACCCAATCCTCCAATTTCATACTTCGGGTATGCATTTTG
ACTTTGCCAGGAATTTCGTTATGAAAATTAAACACAAGAGGGTCATCGTC
CCAAGGAATACTGCTAAGATCCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001747-exon-sc0000011-1491911889:810618..812671 | TCONS_00001747-exon-sc0000011-1491911889:810618..812671 | Clytia hemisphaerica | exon |
| TCONS_00001747-exon-sc0000011-1510915933:810618..812671 | TCONS_00001747-exon-sc0000011-1510915933:810618..812671 | Clytia hemisphaerica | exon |
| TCONS_00001747-exon-sc0000011-1575043694:810618..812671 | TCONS_00001747-exon-sc0000011-1575043694:810618..812671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:810618..812671 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR021848 | DUF3445 |
Blast
The following BLAST results are available for this feature:
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