|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001739 ID=TCONS_00001739|Name=TCONS_00001739|organism=Clytia hemisphaerica|type=transcript|length=1120bp
aaagaatatttcaagagcatgaaattttggtttctaaacgtttttttttt
tataagaaacaaacgactaattttaataaatcgtcactatttgtgttctg
aatgattgtttaacgttcatatgctcacgtagatatcaattgtatatgtg
ttaaatgcataaccaggtaggtccatccgTGTGAGTTTGCAAATGTAGGT
TAGTCCATGCTATAATAAAGGAGATGGTGTTGTAACTTTAAATGTTGATT
TGATGAGGAATAGTTACTTCAACGAGAGGAGTGAagtttttcagactttt
tatgtGTATGGAATGTTTATTCTGAGTTGAAGAGTGGATGTATAGAATGA
GTGGAATAACAGGCAAAACAATCTAAGCGATTTAGGTATCGCAAACCCTT
ATGGTGTGATGAATTTCAGTGCTGAAAAATTGTATTGTATTAGAAATTTT
TAGAACTTATGGTAAAACTTAGAGAAATGTGGTGGTAGGTTTTAGTTTGA
AGAAACGTGTTTGAGCTTGAAATTCTGCATTAAGAGGAAATATGGTGTCT
TGTGAGGTCTTGATATGGTCGGATGTGTTAGACATTAGTGTGTGTACAAA
GTTTCAAGGTAGTAAGAGATGTTGGTTGGAACTATGTGAAAATATATTAA
AAgattaaaatattaaatatgGCAAAAAGAGATTATAAGATGGTCAATAG
TTAGTGTTCATAAATGTTTATAAAGATATTTGCGGGCTTCTTCGTTGACT
TTGTTCTGTATTTCAACGGTTATTCCTCGTAACATTATGGTTTTTATGGC
GGAGTGTATTGCGGAAAGGATGTGGCCAGCGGGTTTGAGTCATTGGGGTT
GTTATGGGATGTGGTACTATTGGAGTTGTTGTCGGAGTTGTGGTTGTTGT
GGGTGTTGTTGTTTCTGTTGTTGTTGGAGTTGTTGTTGTGGATAGCAGTT
GGTTTGATGTCTCGGTTTCCGGTGATGTATTGGTATTTTCTTTGAAGTTT
ggtataaatttttgttttttcctggGGGTTTCCTAGGTTTTGTAAGGTGG
GATGAATTTACGTTTGCGTTTTCTTTTTGTTGATATTGGTGCTTCCGTGT
GGGTGTCTGGTGGGTTCATC Run BLAST on NCBI transcript from alignment at sc0000011:712069..713188 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001739 ID=TCONS_00001739|Name=TCONS_00001739|organism=Clytia hemisphaerica|type=transcript|length=1120bp|location=Sequence derived from alignment at sc0000011:712069..713188 (Clytia hemisphaerica)
GATGAACCCACCAGACACCCACACGGAAGCACCAATATCAACAAAAAGAA
AACGCAAACGTAAATTCATCCCACCTTACAAAACCTAGGAAACCCccagg
aaaaaacaaaaatttataccAAACTTCAAAGAAAATACCAATACATCACC
GGAAACCGAGACATCAAACCAACTGCTATCCACAACAACAACTCCAACAA
CAACAGAAACAACAACACCCACAACAACCACAACTCCGACAACAACTCCA
ATAGTACCACATCCCATAACAACCCCAATGACTCAAACCCGCTGGCCACA
TCCTTTCCGCAATACACTCCGCCATAAAAACCATAATGTTACGAGGAATA
ACCGTTGAAATACAGAACAAAGTCAACGAAGAAGCCCGCAAATATCTTTA
TAAACATTTATGAACACTAACTATTGACCATCTTATAATCTCTTTTTGCc
atatttaatattttaatcTTTTAATATATTTTCACATAGTTCCAACCAAC
ATCTCTTACTACCTTGAAACTTTGTACACACACTAATGTCTAACACATCC
GACCATATCAAGACCTCACAAGACACCATATTTCCTCTTAATGCAGAATT
TCAAGCTCAAACACGTTTCTTCAAACTAAAACCTACCACCACATTTCTCT
AAGTTTTACCATAAGTTCTAAAAATTTCTAATACAATACAATTTTTCAGC
ACTGAAATTCATCACACCATAAGGGTTTGCGATACCTAAATCGCTTAGAT
TGTTTTGCCTGTTATTCCACTCATTCTATACATCCACTCTTCAACTCAGA
ATAAACATTCCATACacataaaaagtctgaaaaactTCACTCCTCTCGTT
GAAGTAACTATTCCTCATCAAATCAACATTTAAAGTTACAACACCATCTC
CTTTATTATAGCATGGACTAACCTACATTTGCAAACTCACAcggatggac
ctacctggttatgcatttaacacatatacaattgatatctacgtgagcat
atgaacgttaaacaatcattcagaacacaaatagtgacgatttattaaaa
ttagtcgtttgtttcttataaaaaaaaaaacgtttagaaaccaaaatttc
atgctcttgaaatattcttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001739-exon-sc0000011-1491911889:712069..713188 | TCONS_00001739-exon-sc0000011-1491911889:712069..713188 | Clytia hemisphaerica | exon |
| TCONS_00001739-exon-sc0000011-1510915933:712069..713188 | TCONS_00001739-exon-sc0000011-1510915933:712069..713188 | Clytia hemisphaerica | exon |
| TCONS_00001739-exon-sc0000011-1575043694:712069..713188 | TCONS_00001739-exon-sc0000011-1575043694:712069..713188 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:712069..713188 . |
Blast
The following BLAST results are available for this feature:
|
