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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001738 ID=TCONS_00001738|Name=TCONS_00001738|organism=Clytia hemisphaerica|type=transcript|length=5325bp ATTGTGTAAAGTAAGAGTTATTGTGTAAAGTAAAAGTTATTGTGTGAAGT AAAAGTTAGCTGTGTTAAGGTTTCAATTTAGTTAGAGTTTTGGTTTAAAA AGTTTCAGTTTAGGTGTCGGTTATTggagtacacgtttttcttgTGCATG TATGGTGATTGTTGTGGCAGTAGCAGTAAAGATGTGTTGAGTTAAGTTTG AGTGATAGTCACCAATATGTGGTAAAGGACCGTGCCTAAATCAGTTTTTA GTGACTATGATTTTGTTTTAATCTTTATtaggaaaatcattttctatgTT ATTACTTTGTTTTTCAGACATAAATCAATTCTGTAATCTCAATATGCTTA TCAGAGATAATGATGTTTTTGTGGTGGCATGATCGAAAATATAACCGACC TTAAGACCATCTTTTAGAAGGTATATGCAAATAGTGGTGTTGCAGAGGAG GGTATACAAAATGAGTGGTATTAATTTTAGTTAGGTTGTGGTTTTCTTGT AATTATGAATTAAGAATGAATTACATATTATGATCAAAGAGTTTGAAAGT TTATATAAATGGTGTCacgaaaaaatgaagttctttAGCATTCATGTGTC TTTTGATACGTTTTGGAGATGGTGGTGTGATGTTTATAGTTTGGATGGTT TGTTGTATGGTGGTGGTTTTAGTTGGTAGATGATCAGAAGTTCTTCATAG TGGTTTGTTGTTGCAGACGTCTGAGTGGGGGTTTGATCATTGGCCAATTC TTTGGTGTTGGGAGTCTTTGTAATTTTCTAGTTTTGGTAATAGCTGGTCT TGATTGGTGTATTGAAGACATTTTCTGGGGCGTATGTGGTACTAGAGTTG TTGAAGTCGTAGTTGGTATGGTGATCTTGAGGATATCTTCGCCAATGATC GTGAAGTTGAATTCAGAATTTTGTGAGTTGGGCATCAGGGTGTGCTTGAG GTACTTGATTTCGGTTGTTTCGATTGCCACCGTAGAGCGTCTTGATTGAT GTGTTGATGTGTTGAAGTCGTAGTTGGTGTGGTGATCTTGAGGATATCTT CGTCACTGATCGTGAAGTTGAATTCAGAATTTTGTGAGTTGGGCATCAGG GTGTGCTTGAGGTACTTGATTTCGTTTCCCATCATGGGAAATAGCAGTAT CAACaattcaatcttcattttctgtAGCATCAGCTCTGATATCATTGGCA CAATCAAGCATTGTATCCTCTGCAATTTCCTGAGTAACATCTGCAAAACG TTTTGCGAGCTTGTCGTAGTTGTTCGCAGTCATAGGTTTAGGCATGTCCA TGAGCGTGCATAAAGTACTAACACTAGAATAGCCTTGTCCACAGGATCTC ATAGTATAAACAATCTTTTTGTTGACATCAAAGGAGGTGTCTGGATGTTG TCTAGATGTATAAAAGTCATTTTTGTACTCACACTTCCCACAAAACACGT AAAGCGATGACGCGAGTCCCTTCTTTCGACCGACGTTTTCCTTTAGCTTT AACTTCTTTTCATTACATTCTGGACAAGTTAAAGTATTGATAACACTGTT CAATATTTCTAGATCCATGAATCTGTAGCCAGATACCGAGTCAGTTGACT TAGGAGTTTCTGAAGCAATGTGGTGAACTTTCTTTTGTGATATAGTTCTT GTGACATCATCATCGGGCGAAACAATTGGTGACCGCAATACAGGAACAGG ACGAGGTGGTGTATTTACAATATTAACAGGTGGAGTATTTACAGTATTTA CAGAGCTTTCAGGAGCAACATTGTCTTGGCTATTTGATACAATCTTCTTG CAAAAGCCTTTCCTTTTCTTGAATATTTTAATACTACTTTGCTTCACTTT GTCAGTTGTcttggccatttctagcttaaAATTTGATTCTGAAAAAGGTC TGGTGTAAAAAAGCACGAAATTCCAATGATTTTACGGAACAGTTGAGAAC ATTGTAGACATTTGTGTGCCGCCATGGGTGGTTTATAAGGGTTTATTTAG GCTAAAAGATGGTCAAAACTGTGTTGCCAAGGGCGTTGCTAGGGACTAAA ATTTATACCGAACCCTAGAAAAATCgaaattgtgaaaaattgagAGCCGT GCGGGATTTCTAGTTTTCATATTCGGAATCTACATAGAATTTTGATCTTA AAAcagttattttttcaatttaaaaaaattcttgatttttttttttgggg gggggggtttagaccaattaacccatgttcgttcgttcgttcgtctgtta caagcttttctcgggattggctcattacttttttctgtttttttggcaca atgatgcaaaataatGATTCCTAAAAAGTtaaggagcccgattttcatGC CCATAACATGGCCGAGTccattttttgagaaagattatttttccggccga aaatgccagaaatatgccggaaatcgccgtttttctggatttttattgga ctttttccttataattggttgtttttcattcaaaaacattattagtagca atgcccaccatcaagcatgtttcaattttcaatgaaattgatttttgaag ctggaactatgtaaaaatcgccggaacaacctattttcgccggaaagaca gtatttttgaatttctcgagctgtgctttatatttttttatgagattttg cacactgatgcaatattatgacaatacctaaaatgtgacggagcccgatt tacgaaaaacattttttctggccgaaaatgccgaaaatatgccggaaaaa ccggtttatTGACACAATCTCGAATTTttatccttagttttttctgtttt ttttttgcagaaagatgtgtattcgcaatgctcaaaacatggccgagtac gattttagagaaaaaaatttaaccggaaatcgccgtttttgcagattttc attcgattttttccttgtatttctatgtttttcattcaaaaacattattc ataacaatgctcaccatcaagcatgattcaattgtcaataaaactgattt ttgcgaccagaactttctatttatttttccttataacccttccctctccc cccatcaacaatcaatgatgaatttattgcgttatgcattttcgctaaac gctttctgactgatttttttcatttgtcttcttgcattgctatctaactt tcatcatcaggtaggtccattcagcagttgtttgtttgtttacaaataAG CGCcccatttttattgttttgattacATCATAGCGACGGATAATTAATGC GAAATTTAAATCATATTTATGCGTTCGAAAGCTGTCACTTTTCACACAAA CTGCGTGAAACAAATCAAATTCGATCTTTGCTTGGTGATTGCAATCAAAA AAAGGTTGTTATTACAAACTGAAATGGAATTACTGATAGAATAGCTAGTA AATAATAGATACAATattgaatttgtttacaaatGACTAAAACCTGTTTG TTCAATGTAATGAATTATTTCTGTCAAGTCTTGTTCTTAGGAAGGAATCC CATTTTTTCCAGGTTTAACATTTACGTTAGGATAAAGAATACTTTCTTTG TAGAGATATGTTGTCTTATTTGACAGTTTGTAAATGGTACCCTTCTTAGA TTCCAACACCTAGgaagtgtcctccagggtttgttccccccaccaaattc tcgattttttaaatctcctccctcttttttccccctatgacttttcagtt ttttagtccccccccctcttttttgctttccccccagaaaattctgaaaa tatcagttccccTTATATACCCATATAAATCGATGTTAACAGtatggaaa caaaaaggttcagaaattatctgctaaaatagaaatgtaaagttgttcta ttataaattgatcaagccaagtttgtccaagatcattcttccaaacttct tggaatgaaCTGAAATCCTAGCAGATCCCACTGAAATGAAGGTTTATcga gtcaatgtaaacattcaaacattcaaattcgaacattcgaacatcagagg tgccaactctcacgcatggGGTGTGAGACTCACGCATTTCCATATggtct cacgcaatttttgaaaagtttaatttctcacgcattttggatttttgaga aaaattctccCGATTTCCCGAGTTTCCGAAaaaaagtttccccgatttcc cgatttttgtaaaaatgtttaCCCGATTTTCCGATATTTTCCAGGTAGTA CCTAGTAGTAAatggggggtatggggtggtttgggtttttttccaggtac ttcccggtagtaaatagggggtatggggtggtttttggatttttccatgt agtatggtgtacttcaggggtgggtgggtgtcaagttttgaaaaatacct tgtagtacacatacatgccgccttctagtacactgaccccccgCACAAAC GTAAAACTTTTCAAAAGGAATATACTAGACGAAATAGAACGAAAATGggt taatgtaaacaaacatgctTAGAAAAGCAGACTTAGAAcgacaatgaaat gaaaattaaaatcccaaataaaatcaaaacaactttaAAAAATACTGAAT ATAAGGATCCTAAAATAAACACAGAAGAAGAAATACTAAATCAAAAAGCA TCCAATGTTTGACAAACAGAATTACAACATCAGTATGACACTTTACTTgt gaaagattaaaaaaaagaacACTGACCAAACCTTAATCATAGTGAATCTA TAATAGACATAatcttcaaaatattaaaaacataaGATTTGAGAGTGTGT AAATGAGTGTTTCTAGATTATCTGATTTCAAATGATTTCTCCTGGGGGCA CATATCATTTGGAGAAAAGAGTATCTCCTTTCAACACAGGAATTGTGGCA TGGTGTTGCATTGTGTTGCAATCAATATCTTAACAAGCTTGCATAGGATA TTAAATGCAGCTATCTGGATCCATCAGAAACTCCACTAGAACATTTAATT GGTTTGGTTTAATTTTATCTTTATGTGCTTTTTCCGTTTCCTCCATCCAC TTCTTTCCAATGATTCTCCAGACTCTTTTCAATTCGTCCTCTAACTCTTT ACTTGAACATGGAATAAGCGCATCATAATGGACATGACTTTGTATCCATT CCATTTTGCGGGGCTGATTTTTGTTTCCTTTGCATCGTCGTATTTTGAAA CTGTATGAGTTGTTGTAAAAAGATCCAGCAGTGGCTTTATCTTTGTTATC CGTTGGTCGATGTTTGATTATTTGTCTGAATTGAGAAGAAAGTTCACACT TCCCCCcgccaaatttgccaactatcgatgtccccccccccccccccctt tactattcaaattttcattcccccc Run BLAST on NCBI protein sequence of TCONS_00001738-protein >TCONS_00001738-protein ID=TCONS_00001738-protein|Name=TCONS_00001738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MAKTTDKVKQSSIKIFKKRKGFCKKIVSNSQDNVAPESSVNTVNTPPVNI VNTPPRPVPVLRSPIVSPDDDVTRTISQKKVHHIASETPKSTDSVSGYRF MDLEILNSVINTLTCPECNEKKLKLKENVGRKKGLASSLYVFCGKCEYKN DFYTSRQHPDTSFDVNKKIVYTMRSCGQGYSSVSTLCTLMDMPKPMTANN YDKLAKRFADVTQEIAEDTMLDCANDIRADATENED Run BLAST on NCBI transcript from alignment at sc0000011:706635..711959 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001738 ID=TCONS_00001738|Name=TCONS_00001738|organism=Clytia hemisphaerica|type=transcript|length=5325bp|location=Sequence derived from alignment at sc0000011:706635..711959 (Clytia hemisphaerica) ggggggaatgaaaatttgaatagtaaagggggggggggggggggacatcg
atagttggcaaatttggcgGGGGGAAGTGTGAACTTTCTTCTCAATTCAG
ACAAATAATCAAACATCGACCAACGGATAACAAAGATAAAGCCACTGCTG
GATCTTTTTACAACAACTCATACAGTTTCAAAATACGACGATGCAAAGGA
AACAAAAATCAGCCCCGCAAAATGGAATGGATACAAAGTCATGTCCATTA
TGATGCGCTTATTCCATGTTCAAGTAAAGAGTTAGAGGACGAATTGAAAA
GAGTCTGGAGAATCATTGGAAAGAAGTGGATGGAGGAAACGGAAAAAGCA
CATAAAGATAAAATTAAACCAAACCAATTAAATGTTCTAGTGGAGTTTCT
GATGGATCCAGATAGCTGCATTTAATATCCTATGCAAGCTTGTTAAGATA
TTGATTGCAACACAATGCAACACCATGCCACAATTCCTGTGTTGAAAGGA
GATACTCTTTTCTCCAAATGATATGTGCCCCCAGGAGAAATCATTTGAAA
TCAGATAATCTAGAAACACTCATTTACACACTCTCAAATCttatgttttt
aatattttgaagatTATGTCTATTATAGATTCACTATGATTAAGGTTTGG
TCAGTgttcttttttttaatctttcacAAGTAAAGTGTCATACTGATGTT
GTAATTCTGTTTGTCAAACATTGGATGCTTTTTGATTTAGTATTTCTTCT
TCTGTGTTTATTTTAGGATCCTTATATTCAGTATTTTTtaaagttgtttt
gattttatttgggattttaattttcatttcattgtcgTTCTAAGTCTGCT
TTTCTAagcatgtttgtttacattaaccCATTTTCGTTCTATTTCGTCTA
GTATATTCCTTTTGAAAAGTTTTACGTTTGTGcggggggtcagtgtacta
gaaggcggcatgtatgtgtactacaaggtatttttcaaaacttgacaccc
acccacccctgaagtacaccatactacatggaaaaatccaaaaaccaccc
cataccccctatttactaccgggaagtacctggaaaaaaacccaaaccac
cccataccccccatTTACTACTAGGTACTACCTGGAAAATATCGGAAAAT
CGGGtaaacatttttacaaaaatcgggaaatcggggaaactttttTTCGG
AAACTCGGGAAATCGggagaatttttctcaaaaatccaaaatgcgtgaga
aattaaacttttcaaaaattgcgtgagaccATATGGAAATGCGTGAGTCT
CACACCccatgcgtgagagttggcacctctgatgttcgaatgttcgaatt
tgaatgtttgaatgtttacattgactcgATAAACCTTCATTTCAGTGGGA
TCTGCTAGGATTTCAGttcattccaagaagtttggaagaatgatcttgga
caaacttggcttgatcaatttataatagaacaactttacatttctatttt
agcagataatttctgaacctttttgtttccataCTGTTAACATCGATTTA
TATGGGTATATAAggggaactgatattttcagaattttctggggggaaag
caaaaaagagggggggggactaaaaaactgaaaagtcatagggggaaaaa
agagggaggagatttaaaaaatcgagaatttggtggggggaacaaaccct
ggaggacacttcCTAGGTGTTGGAATCTAAGAAGGGTACCATTTACAAAC
TGTCAAATAAGACAACATATCTCTACAAAGAAAGTATTCTTTATCCTAAC
GTAAATGTTAAACCTGGAAAAAATGGGATTCCTTCCTAAGAACAAGACTT
GACAGAAATAATTCATTACATTGAACAAACAGGTTTTAGTCatttgtaaa
caaattcaatATTGTATCTATTATTTACTAGCTATTCTATCAGTAATTCC
ATTTCAGTTTGTAATAACAACCTTTTTTTGATTGCAATCACCAAGCAAAG
ATCGAATTTGATTTGTTTCACGCAGTTTGTGTGAAAAGTGACAGCTTTCG
AACGCATAAATATGATTTAAATTTCGCATTAATTATCCGTCGCTATGATg
taatcaaaacaataaaaatgggGCGCTtatttgtaaacaaacaaacaact
gctgaatggacctacctgatgatgaaagttagatagcaatgcaagaagac
aaatgaaaaaaatcagtcagaaagcgtttagcgaaaatgcataacgcaat
aaattcatcattgattgttgatggggggagagggaagggttataaggaaa
aataaatagaaagttctggtcgcaaaaatcagttttattgacaattgaat
catgcttgatggtgagcattgttatgaataatgtttttgaatgaaaaaca
tagaaatacaaggaaaaaatcgaatgaaaatctgcaaaaacggcgatttc
cggttaaatttttttctctaaaatcgtactcggccatgttttgagcattg
cgaatacacatctttctgcaaaaaaaaaacagaaaaaactaaggataaAA
ATTCGAGATTGTGTCAataaaccggtttttccggcatattttcggcattt
tcggccagaaaaaatgtttttcgtaaatcgggctccgtcacattttaggt
attgtcataatattgcatcagtgtgcaaaatctcataaaaaaatataaag
cacagctcgagaaattcaaaaatactgtctttccggcgaaaataggttgt
tccggcgatttttacatagttccagcttcaaaaatcaatttcattgaaaa
ttgaaacatgcttgatggtgggcattgctactaataatgtttttgaatga
aaaacaaccaattataaggaaaaagtccaataaaaatccagaaaaacggc
gatttccggcatatttctggcattttcggccggaaaaataatctttctca
aaaaatggACTCGGCCATGTTATGGGCatgaaaatcgggctccttaACTT
TTTAGGAATCattattttgcatcattgtgccaaaaaaacagaaaaaagta
atgagccaatcccgagaaaagcttgtaacagacgaacgaacgaacgaaca
tgggttaattggtctaaacccccccccccaaaaaaaaaaatcaagaattt
ttttaaattgaaaaaataactgTTTTAAGATCAAAATTCTATGTAGATTC
CGAATATGAAAACTAGAAATCCCGCACGGCTctcaatttttcacaatttc
GATTTTTCTAGGGTTCGGTATAAATTTTAGTCCCTAGCAACGCCCTTGGC
AACACAGTTTTGACCATCTTTTAGCCTAAATAAACCCTTATAAACCACCC
ATGGCGGCACACAAATGTCTACAATGTTCTCAACTGTTCCGTAAAATCAT
TGGAATTTCGTGCTTTTTTACACCAGACCTTTTTCAGAATCAAATTttaa
gctagaaatggccaagACAACTGACAAAGTGAAGCAAAGTAGTATTAAAA
TATTCAAGAAAAGGAAAGGCTTTTGCAAGAAGATTGTATCAAATAGCCAA
GACAATGTTGCTCCTGAAAGCTCTGTAAATACTGTAAATACTCCACCTGT
TAATATTGTAAATACACCACCTCGTCCTGTTCCTGTATTGCGGTCACCAA
TTGTTTCGCCCGATGATGATGTCACAAGAACTATATCACAAAAGAAAGTT
CACCACATTGCTTCAGAAACTCCTAAGTCAACTGACTCGGTATCTGGCTA
CAGATTCATGGATCTAGAAATATTGAACAGTGTTATCAATACTTTAACTT
GTCCAGAATGTAATGAAAAGAAGTTAAAGCTAAAGGAAAACGTCGGTCGA
AAGAAGGGACTCGCGTCATCGCTTTACGTGTTTTGTGGGAAGTGTGAGTA
CAAAAATGACTTTTATACATCTAGACAACATCCAGACACCTCCTTTGATG
TCAACAAAAAGATTGTTTATACTATGAGATCCTGTGGACAAGGCTATTCT
AGTGTTAGTACTTTATGCACGCTCATGGACATGCCTAAACCTATGACTGC
GAACAACTACGACAAGCTCGCAAAACGTTTTGCAGATGTTACTCAGGAAA
TTGCAGAGGATACAATGCTTGATTGTGCCAATGATATCAGAGCTGATGCT
acagaaaatgaagattgaattGTTGATACTGCTATTTCCCATGATGGGAA
ACGAAATCAAGTACCTCAAGCACACCCTGATGCCCAACTCACAAAATTCT
GAATTCAACTTCACGATCAGTGACGAAGATATCCTCAAGATCACCACACC
AACTACGACTTCAACACATCAACACATCAATCAAGACGCTCTACGGTGGC
AATCGAAACAACCGAAATCAAGTACCTCAAGCACACCCTGATGCCCAACT
CACAAAATTCTGAATTCAACTTCACGATCATTGGCGAAGATATCCTCAAG
ATCACCATACCAACTACGACTTCAACAACTCTAGTACCACATACGCCCCA
GAAAATGTCTTCAATACACCAATCAAGACCAGCTATTACCAAAACTAGAA
AATTACAAAGACTCCCAACACCAAAGAATTGGCCAATGATCAAACCCCCA
CTCAGACGTCTGCAACAACAAACCACTATGAAGAACTTCTGATCATCTAC
CAACTAAAACCACCACCATACAACAAACCATCCAAACTATAAACATCACA
CCACCATCTCCAAAACGTATCAAAAGACACATGAATGCTaaagaacttca
ttttttcgtGACACCATTTATATAAACTTTCAAACTCTTTGATCATAATA
TGTAATTCATTCTTAATTCATAATTACAAGAAAACCACAACCTAACTAAA
ATTAATACCACTCATTTTGTATACCCTCCTCTGCAACACCACTATTTGCA
TATACCTTCTAAAAGATGGTCTTAAGGTCGGTTATATTTTCGATCATGCC
ACCACAAAAACATCATTATCTCTGATAAGCATATTGAGATTACAGAATTG
ATTTATGTCTGAAAAACAAAGTAATAAcatagaaaatgattttcctaATA
AAGATTAAAACAAAATCATAGTCACTAAAAACTGATTTAGGCACGGTCCT
TTACCACATATTGGTGACTATCACTCAAACTTAACTCAACACATCTTTAC
TGCTACTGCCACAACAATCACCATACATGCAcaagaaaaacgtgtactcc
AATAACCGACACCTAAACTGAAACTTTTTAAACCAAAACTCTAACTAAAT
TGAAACCTTAACACAGCTAACTTTTACTTCACACAATAACTTTTACTTTA
CACAATAACTCTTACTTTACACAAT Coding sequence (CDS) from alignment at sc0000011:706635..711959 >TCONS_00001738 ID=TCONS_00001738|Name=TCONS_00001738|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0000011:706635..711959 (Clytia hemisphaerica) atggccaagACAACTGACAAAGTGAAGCAAAGTAGTATTAAAATATTCAA GAAAAGGAAAGGCTTTTGCAAGAAGATTGTATCAAATAGCCAAGACAATG TTGCTCCTGAAAGCTCTGTAAATACTGTAAATACTCCACCTGTTAATATT GTAAATACACCACCTCGTCCTGTTCCTGTATTGCGGTCACCAATTGTTTC GCCCGATGATGATGTCACAAGAACTATATCACAAAAGAAAGTTCACCACA TTGCTTCAGAAACTCCTAAGTCAACTGACTCGGTATCTGGCTACAGATTC ATGGATCTAGAAATATTGAACAGTGTTATCAATACTTTAACTTGTCCAGA ATGTAATGAAAAGAAGTTAAAGCTAAAGGAAAACGTCGGTCGAAAGAAGG GACTCGCGTCATCGCTTTACGTGTTTTGTGGGAAGTGTGAGTACAAAAAT GACTTTTATACATCTAGACAACATCCAGACACCTCCTTTGATGTCAACAA AAAGATTGTTTATACTATGAGATCCTGTGGACAAGGCTATTCTAGTGTTA GTACTTTATGCACGCTCATGGACATGCCTAAACCTATGACTGCGAACAAC TACGACAAGCTCGCAAAACGTTTTGCAGATGTTACTCAGGAAATTGCAGA GGATACAATGCTTGATTGTGCCAATGATATCAGAGCTGATGCTacagaaa atgaagattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001738-exon-sc0000011-1491911889:706635..711959 | TCONS_00001738-exon-sc0000011-1491911889:706635..711959 | Clytia hemisphaerica | exon |
TCONS_00001738-exon-sc0000011-1510915933:706635..711959 | TCONS_00001738-exon-sc0000011-1510915933:706635..711959 | Clytia hemisphaerica | exon |
TCONS_00001738-exon-sc0000011-1575043694:706635..711959 | TCONS_00001738-exon-sc0000011-1575043694:706635..711959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000011 | supercontig | sc0000011:706635..711959 . |
Blast
The following BLAST results are available for this feature:
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