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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001728 ID=TCONS_00001728|Name=TCONS_00001728|organism=Clytia hemisphaerica|type=transcript|length=618bp
tctttttcttttgttgataaGCTACAAAGCATATATAACAGTAACATAAT
CCTATAATACACTGTGGTACAAATATTGTTACTTTATTTAGTATGAGTGA
CCAAGTAGCTGTTAACTGATACGGGCAGTTCTCTTTCAATCCAGGTTGGG
AAATATAAAAAGGGCCTAAATCGAATATTGTAAAGACAATCCATGATATG
ATGTTTGAGATATCGATAAATAGACGATGCTTACGTGTGAGTATGGTAAT
ACGAAAGGTGGATAATGTTTTTATACGATCTATAACCATAATGGCGATGC
TAGCAGTTGAATAATGAATACAAAGAAAATGTGTGAATCTCCACGCGGCA
CATATTCGTGAACGAATCTCAGGATCTGTAACTCCATATTTTTTGAGCCC
ATACAAGGGTAAAGGGAGTGCACCAACCAGAGCATTTGCGACCAGTATCC
AACATAATGGATATTGATGATAACCAAGTGATTTGCGTCGGTTGATTTGT
ACCACGAATGTTAAAACGTTTAATATGAATATGGAAGCACCGTAAAATAT
TAAAGCGATCAATGCAGCTAATGGATCCATAATGTCTTTACACATTGAAT
ATATTGAGTCGACTTGTC Run BLAST on NCBI protein sequence of TCONS_00001728-protein >TCONS_00001728-protein ID=TCONS_00001728-protein|Name=TCONS_00001728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
QVDSIYSMCKDIMDPLAALIALIFYGASIFILNVLTFVVQINRRKSLGYH
QYPLCWILVANALVGALPLPLYGLKKYGVTDPEIRSRICAAWRFTHFLCI
HYSTASIAIMVIDRIKTLSTFRITILTRKHRLFIDISNIISWIVFTIFDL
GPFYISQPGLKENCPYQLTATWSLILNKVTIFVPQCIIGLCYCYICFVAY
QQKKK Run BLAST on NCBI transcript from alignment at sc0000011:301481..302098 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001728 ID=TCONS_00001728|Name=TCONS_00001728|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at sc0000011:301481..302098 (Clytia hemisphaerica)
GACAAGTCGACTCAATATATTCAATGTGTAAAGACATTATGGATCCATTA
GCTGCATTGATCGCTTTAATATTTTACGGTGCTTCCATATTCATATTAAA
CGTTTTAACATTCGTGGTACAAATCAACCGACGCAAATCACTTGGTTATC
ATCAATATCCATTATGTTGGATACTGGTCGCAAATGCTCTGGTTGGTGCA
CTCCCTTTACCCTTGTATGGGCTCAAAAAATATGGAGTTACAGATCCTGA
GATTCGTTCACGAATATGTGCCGCGTGGAGATTCACACATTTTCTTTGTA
TTCATTATTCAACTGCTAGCATCGCCATTATGGTTATAGATCGTATAAAA
ACATTATCCACCTTTCGTATTACCATACTCACACGTAAGCATCGTCTATT
TATCGATATCTCAAACATCATATCATGGATTGTCTTTACAATATTCGATT
TAGGCCCTTTTTATATTTCCCAACCTGGATTGAAAGAGAACTGCCCGTAT
CAGTTAACAGCTACTTGGTCACTCATACTAAATAAAGTAACAATATTTGT
ACCACAGTGTATTATAGGATTATGTTACTGTTATATATGCTTTGTAGCtt
atcaacaaaagaaaaaga Coding sequence (CDS) from alignment at sc0000011:301481..302098 >TCONS_00001728 ID=TCONS_00001728|Name=TCONS_00001728|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at sc0000011:301481..302098 (Clytia hemisphaerica)
CAAGTCGACTCAATATATTCAATGTGTAAAGACATTATGGATCCATTAGC
TGCATTGATCGCTTTAATATTTTACGGTGCTTCCATATTCATATTAAACG
TTTTAACATTCGTGGTACAAATCAACCGACGCAAATCACTTGGTTATCAT
CAATATCCATTATGTTGGATACTGGTCGCAAATGCTCTGGTTGGTGCACT
CCCTTTACCCTTGTATGGGCTCAAAAAATATGGAGTTACAGATCCTGAGA
TTCGTTCACGAATATGTGCCGCGTGGAGATTCACACATTTTCTTTGTATT
CATTATTCAACTGCTAGCATCGCCATTATGGTTATAGATCGTATAAAAAC
ATTATCCACCTTTCGTATTACCATACTCACACGTAAGCATCGTCTATTTA
TCGATATCTCAAACATCATATCATGGATTGTCTTTACAATATTCGATTTA
GGCCCTTTTTATATTTCCCAACCTGGATTGAAAGAGAACTGCCCGTATCA
GTTAACAGCTACTTGGTCACTCATACTAAATAAAGTAACAATATTTGTAC
CACAGTGTATTATAGGATTATGTTACTGTTATATATGCTTTGTAGCttat
caacaaaagaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001728-exon-sc0000011-1491911889:301481..302098 | TCONS_00001728-exon-sc0000011-1491911889:301481..302098 | Clytia hemisphaerica | exon |
| TCONS_00001728-exon-sc0000011-1510915933:301481..302098 | TCONS_00001728-exon-sc0000011-1510915933:301481..302098 | Clytia hemisphaerica | exon |
| TCONS_00001728-exon-sc0000011-1575043694:301481..302098 | TCONS_00001728-exon-sc0000011-1575043694:301481..302098 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:301481..302098 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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