TCONS_00001726 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001726
Unique NameTCONS_00001726
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001726 ID=TCONS_00001726|Name=TCONS_00001726|organism=Clytia hemisphaerica|type=transcript|length=536bp
TTCTTGTTTGTTTCTGTCCGCTTGctaatatattcaattttcgaaatttg
taTCACTTTATTATAAAGAAATGTGCATGGAAAACTCAACAAGCAANCTC
AAACACATTATTTCCTACCGGAAGTCGAGAGAATactgttaaaaaaattt
atgataGTATTAATCAACTGTTAAAGATACCATAACGACTTCCTTTCATT
TCCCCTTGATTATAGGAGGGTCGAATTTTACACGGTAtcgatgtaaaaaa
aaaattaaaaaacatgtagacTTTTACATTGGGAAAAttaaaggaaaaat
attttagtgatCACACGTGATCTTTTAGCACACCTAGGCCAGGGGGAGCA
AATTTTTAACCTTTGTCCTTTTAACCTTTCTTGTTTGTTTCTGTCCGCTT
GctaatatattcaattttcgaaatttgtaTCACTTTATTATAAAGAAATG
TGCATGGAAAACTCAACAAGCAAACTGTATCTGAAGATATTCAAATGTAA
TATTAGACAGATCCTTATATGTTGGCCCCAAGTCCA
Run BLAST on NCBI

transcript from alignment at sc0000011:291400..291935

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001726 ID=TCONS_00001726|Name=TCONS_00001726|organism=Clytia hemisphaerica|type=transcript|length=536bp|location=Sequence derived from alignment at sc0000011:291400..291935 (Clytia hemisphaerica)
TGGACTTGGGGCCAACATATAAGGATCTGTCTAATATTACATTTGAATAT
CTTCAGATACAGTTTGCTTGTTGAGTTTTCCATGCACATTTCTTTATAAT
AAAGTGAtacaaatttcgaaaattgaatatattagCAAGCGGACAGAAAC
AAACAAGAAAGGTTAAAAGGACAAAGGTTAAAAATTTGCTCCCCCTGGCC
TAGGTGTGCTAAAAGATCACGTGTGatcactaaaatatttttcctttaaT
TTTCCCAATGTAAAAgtctacatgttttttaattttttttttacatcgaT
ACCGTGTAAAATTCGACCCTCCTATAATCAAGGGGAAATGAAAGGAAGTC
GTTATGGTATCTTTAACAGTTGATTAATACtatcataaatttttttaaca
gtATTCTCTCGACTTCCGGTAGGAAATAATGTGTTTGAGNTTGCTTGTTG
AGTTTTCCATGCACATTTCTTTATAATAAAGTGAtacaaatttcgaaaat
tgaatatattagCAAGCGGACAGAAACAAACAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000912XLOC_000912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001726-exon-sc0000011-1491911889:291400..291935TCONS_00001726-exon-sc0000011-1491911889:291400..291935Clytia hemisphaericaexon
TCONS_00001726-exon-sc0000011-1510915933:291400..291935TCONS_00001726-exon-sc0000011-1510915933:291400..291935Clytia hemisphaericaexon
TCONS_00001726-exon-sc0000011-1575043694:291400..291935TCONS_00001726-exon-sc0000011-1575043694:291400..291935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:291400..291935 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	10.0955	4.39344	1.81333	2.74231	0.0914263	0.226493	0	0	0.360782	0.224805	0	0.132227	0.0814465	0	0	0.120687	0	0.306996	0.124398	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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