TCONS_00001720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001720
Unique NameTCONS_00001720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001720 ID=TCONS_00001720|Name=TCONS_00001720|organism=Clytia hemisphaerica|type=transcript|length=279bp
CCCCCATATCCGCCATATTTTTTGAAGTACGAACAAATCGATCTAAGACG
CGCGTTGAATCCGAAAACAGAAGTAGAAGCCAACAAAGCACAGATCACAA
CAAAAAATTGACCTCTCGACtcgaaaacttttaaaatttttgataaaact
tttGATACAGTTCTTTATTGAAGATGAGTGAAACAAACTTTGAGAACACT
GTAGACAGTGGTCTTCTGAACTTAGGTTGTATTGTCCTACAGCCATGGAA
GATTGAGGATGCTTCAAAAAACCCAGAAG
Run BLAST on NCBI

transcript from alignment at sc0000011:236606..236884

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001720 ID=TCONS_00001720|Name=TCONS_00001720|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at sc0000011:236606..236884 (Clytia hemisphaerica)
CTTCTGGGTTTTTTGAAGCATCCTCAATCTTCCATGGCTGTAGGACAATA
CAACCTAAGTTCAGAAGACCACTGTCTACAGTGTTCTCAAAGTTTGTTTC
ACTCATCTTCAATAAAGAACTGTATCaaaagttttatcaaaaattttaaa
agttttcgaGTCGAGAGGTCAATTTTTTGTTGTGATCTGTGCTTTGTTGG
CTTCTACTTCTGTTTTCGGATTCAACGCGCGTCTTAGATCGATTTGTTCG
TACTTCAAAAAATATGGCGGATATGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000906XLOC_000906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001720-exon-sc0000011-1491911889:236606..236884TCONS_00001720-exon-sc0000011-1491911889:236606..236884Clytia hemisphaericaexon
TCONS_00001720-exon-sc0000011-1510915933:236606..236884TCONS_00001720-exon-sc0000011-1510915933:236606..236884Clytia hemisphaericaexon
TCONS_00001720-exon-sc0000011-1575043694:236606..236884TCONS_00001720-exon-sc0000011-1575043694:236606..236884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:236606..236884 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00183	1.46541	1.13432	0.554878	2.02653	4.27038	1.93201	3.01454	0	0	0	0.333606	0.666284	0.345971	0	0.610485	0	0.385423	0	0	0.484312	1.41738	1.14868	0.522157	2.15124	2.87989	0	0	1.11195	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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