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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001719 ID=TCONS_00001719|Name=TCONS_00001719|organism=Clytia hemisphaerica|type=transcript|length=2703bp
CAAACTAATCAATATTTACAATTCTTATGATATATTATCAAATATCTTGT
TATGAAgtgaaattgttattttttaaagCCATTTCCTGTAGTCGCATCTT
ATTAAAAGCTTCTCTTGTATTCACTTGTGGTCTGAAAATTATAATGAAAG
TTTTGTAAccatataataaaataaaatgcgCTGCATTATATATAGTTGTG
ACCAGTAGCACAATGAAACTACGATTGACCATTGATTGTTGGGAGAAATA
AACTCCAGTTGCTGCCACGAATACAACTGTTGATATAAAGGATGAATAAA
TGACATGATTTGTTTCTTGGAAACGGGAAGGTAGTTTGCGAGCACGGAAC
CCTTGGATTCCACTGCACAAGGACAATACAGCTGCAAAAAGTAATTGAAT
GTATATCATAATGTTGTTACTACAATACAACTCCTTTGTTagcaaattat
caaaatatttagctTCTATTGTGACCCTTTTGCTGTTAAAGAAATACAAA
ATGTTTAATACTGTGTTGATTATAATGGCTATGACAATGATGAGCCATTC
TGAAGCTTTAGTCATGAGGATTTCTACAGGtgacattttgattttgctgC
CCACTATCATGTAtagtttttgtgattttgaaatGTTGATTGATAAGGTG
ATACTAAATGCAAGACCAAGCAAGATTTGGCGTCCGATACACATTAATGT
TGTCGTGTGAAAGAACACGAAACTTGGTAGAATGAACAATAATAAATGGT
TGATGAGCTGTATTATGGTCATTTTGTGGTTTGATAATTTGACGATCGGA
GTTTCTCggttgattaaaaaaacaaacattgttAATAAAGTCATTATTAC
TAACAGAGCCGATGGGGCGAGGATGATCCAAGTTGTAGAATATTTGATAT
TTAGAGTGGCCTCGATGAAGGGATCATAGCAGAGGGTGTTGTTCGAATTG
ACTCTGTTTGGGTAGTAACATTCTTGGCAGCGCTGTTTATTCCCTTGATA
TGGCTTGTAGAATTTGTCTGGACAGAGTTTACAGTTCCATCCATAGCTTT
GATCCCAGTCTTTCTCTTCAtaaaaagaatgtttaagttCATAGCCTGCT
TGACAAAGTGGTTTCCTTTCATCGCAATAAGGTCTGGCTTTCAAAGCTAT
TGAAGGATTGTATGACCATTGTGACTCGCGTAAAATATTTTCTGGAGTAA
CATTTGCAATGTAGTATATAGATTTCCAGAAAACAATCAAGAATTCAACC
CAACCTTGTTCAGTGAGCATTCTATTTATACCACTTTTCAAGAACGATAT
GGGTATCCTGAAAAATTGAGTTAGTGTGATATCATTTCCACATCTGTATG
TCATATCCAAAAATCTAAGCTGCCAGCATGGAAAAAGATTCTTTAATCGA
TTTTGAAACCTTTTCTCCTTTAAGAACAGCACCCAGGTGCTTTCACGCTT
TATTCTAAACTCTTGTAAGAGAATGTTCGGTAGATTAAAAGAAAGTATAA
AAAAGTGATTCACTGCTCCTGATCCTTGAAAGTTTATTAAAACTGTACTT
TCCATGAATGATAAATCTCTGTTTGGGTCATAACTACTTATGGTTTTAGT
AACAAACGGTAAATAAagtcttttggtcattttctgtcccTGGAGACCAG
CTTTTCGTAAAAAAGTATCAATTGAGGTACTATCACCCGCTTGAACGATA
AAAGAGAGATTATAACTTGTCAGCAAATTTAATGCATTGTTGATAGCATT
CTGGTCGTGTACATCAATATTTAGTTCCTTGTAACAATCCATTGGATTCA
AGCTCCTATAAATACACATGGCAGATGCAGAAGGGTCGTTTGCACATAGT
TCTTTAGTCGATCGAATTGAAGTTTGATTCTCATCTCTTAGGTTGAAAAA
TGCATTATATGTTATATTgagtttatttttgattttaataaaattagTAT
GCATGTTAACACCGAAGCTAGATTCATAACTATAGATAGCTAAAGGGTGG
TCTAAGAAGTAAGCTGGATACATCGGTTGATCAGTTACACTGACCAGATT
AAATGAATTGAGGGGTAAGATCATTGAGCTAACCAAGCGAGTGAGATCAA
ATGACAGATAAGTAAATACAAGAGTCATGTGTCCAGATTGTTTGTAAAct
ccttttttgttttcacattTGATTCCAGAATAGCTTTCATCGACTACCAA
CGGTAGAAGAGTATCTGTCACAGTATTGGAATTATTTCTCATATCTTTGA
AACATAGATTGACTTTAAACCAGAAGTGGTGTTGCTGATCAGCTTTGATG
ATTGATTCTTGATTCATTAGAGCATGTTGACATTCCTTTTTCTGCTCTGG
TTGACATCTGGTCAATGTTAACAGTCCAAGAAATTGACCCTCCATTCGCT
TGGATCTTGTAAACTGGGCAGATACCAATGCTAGAATTACTAGTGTATGA
GTTGAAAgaagttttgacattttcactTGTCCTCTCGAGTCCTCTAATAA
TCAAATTAGCGAAACAACTTGctcaatcaaatattttgtaaagttacaaa
ttatagaaagtttCACTTCCTTGCTAGATAGATTTCAAATGCAACAACAA
AACCCAACTACTTCCTTAAGGTCCAACGATTTTCACCATCAATTTGTCTT
TTAGATTTACAGTCCCTTCTAGAATAACAATGCAACTTTGATATTGATGG
TAC Run BLAST on NCBI protein sequence of TCONS_00001719-protein >TCONS_00001719-protein ID=TCONS_00001719-protein|Name=TCONS_00001719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=806bp
MSKLLSTHTLVILALVSAQFTRSKRMEGQFLGLLTLTRCQPEQKKECQHA
LMNQESIIKADQQHHFWFKVNLCFKDMRNNSNTVTDTLLPLVVDESYSGI
KCENKKGVYKQSGHMTLVFTYLSFDLTRLVSSMILPLNSFNLVSVTDQPM
YPAYFLDHPLAIYSYESSFGVNMHTNFIKIKNKLNITYNAFFNLRDENQT
SIRSTKELCANDPSASAMCIYRSLNPMDCYKELNIDVHDQNAINNALNLL
TSYNLSFIVQAGDSTSIDTFLRKAGLQGQKMTKRLYLPFVTKTISSYDPN
RDLSFMESTVLINFQGSGAVNHFFILSFNLPNILLQEFRIKRESTWVLFL
KEKRFQNRLKNLFPCWQLRFLDMTYRCGNDITLTQFFRIPISFLKSGINR
MLTEQGWVEFLIVFWKSIYYIANVTPENILRESQWSYNPSIALKARPYCD
ERKPLCQAGYELKHSFYEEKDWDQSYGWNCKLCPDKFYKPYQGNKQRCQE
CYYPNRVNSNNTLCYDPFIEATLNIKYSTTWIILAPSALLVIMTLLTMFV
FLINRETPIVKLSNHKMTIIQLINHLLLFILPSFVFFHTTTLMCIGRQIL
LGLAFSITLSINISKSQKLYMIVGSKIKMSPVEILMTKASEWLIIVIAII
INTVLNILYFFNSKRVTIEAKYFDNLLTKELYCSNNIMIYIQLLFAAVLS
LCSGIQGFRARKLPSRFQETNHVIYSSFISTVVFVAATGVYFSQQSMVNR
SFIVLLVTTIYNAAHFILLYGYKTFIIIFRPQVNTREAFNKMRLQEMALK
NNNFTS Run BLAST on NCBI transcript from alignment at sc0000011:223631..226333 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001719 ID=TCONS_00001719|Name=TCONS_00001719|organism=Clytia hemisphaerica|type=transcript|length=2703bp|location=Sequence derived from alignment at sc0000011:223631..226333 (Clytia hemisphaerica)
GTACCATCAATATCAAAGTTGCATTGTTATTCTAGAAGGGACTGTAAATC
TAAAAGACAAATTGATGGTGAAAATCGTTGGACCTTAAGGAAGTAGTTGG
GTTTTGTTGTTGCATTTGAAATCTATCTAGCAAGGAAGTGaaactttcta
taatttgtaactttacaaaatatttgattgagCAAGTTGTTTCGCTAATT
TGATTATTAGAGGACTCGAGAGGACAagtgaaaatgtcaaaacttcTTTC
AACTCATACACTAGTAATTCTAGCATTGGTATCTGCCCAGTTTACAAGAT
CCAAGCGAATGGAGGGTCAATTTCTTGGACTGTTAACATTGACCAGATGT
CAACCAGAGCAGAAAAAGGAATGTCAACATGCTCTAATGAATCAAGAATC
AATCATCAAAGCTGATCAGCAACACCACTTCTGGTTTAAAGTCAATCTAT
GTTTCAAAGATATGAGAAATAATTCCAATACTGTGACAGATACTCTTCTA
CCGTTGGTAGTCGATGAAAGCTATTCTGGAATCAaatgtgaaaacaaaaa
aggagTTTACAAACAATCTGGACACATGACTCTTGTATTTACTTATCTGT
CATTTGATCTCACTCGCTTGGTTAGCTCAATGATCTTACCCCTCAATTCA
TTTAATCTGGTCAGTGTAACTGATCAACCGATGTATCCAGCTTACTTCTT
AGACCACCCTTTAGCTATCTATAGTTATGAATCTAGCTTCGGTGTTAACA
TGCATActaattttattaaaatcaaaaataaactcAATATAACATATAAT
GCATTTTTCAACCTAAGAGATGAGAATCAAACTTCAATTCGATCGACTAA
AGAACTATGTGCAAACGACCCTTCTGCATCTGCCATGTGTATTTATAGGA
GCTTGAATCCAATGGATTGTTACAAGGAACTAAATATTGATGTACACGAC
CAGAATGCTATCAACAATGCATTAAATTTGCTGACAAGTTATAATCTCTC
TTTTATCGTTCAAGCGGGTGATAGTACCTCAATTGATACTTTTTTACGAA
AAGCTGGTCTCCAgggacagaaaatgaccaaaagactTTATTTACCGTTT
GTTACTAAAACCATAAGTAGTTATGACCCAAACAGAGATTTATCATTCAT
GGAAAGTACAGTTTTAATAAACTTTCAAGGATCAGGAGCAGTGAATCACT
TTTTTATACTTTCTTTTAATCTACCGAACATTCTCTTACAAGAGTTTAGA
ATAAAGCGTGAAAGCACCTGGGTGCTGTTCTTAAAGGAGAAAAGGTTTCA
AAATCGATTAAAGAATCTTTTTCCATGCTGGCAGCTTAGATTTTTGGATA
TGACATACAGATGTGGAAATGATATCACACTAACTCAATTTTTCAGGATA
CCCATATCGTTCTTGAAAAGTGGTATAAATAGAATGCTCACTGAACAAGG
TTGGGTTGAATTCTTGATTGTTTTCTGGAAATCTATATACTACATTGCAA
ATGTTACTCCAGAAAATATTTTACGCGAGTCACAATGGTCATACAATCCT
TCAATAGCTTTGAAAGCCAGACCTTATTGCGATGAAAGGAAACCACTTTG
TCAAGCAGGCTATGaacttaaacattctttttaTGAAGAGAAAGACTGGG
ATCAAAGCTATGGATGGAACTGTAAACTCTGTCCAGACAAATTCTACAAG
CCATATCAAGGGAATAAACAGCGCTGCCAAGAATGTTACTACCCAAACAG
AGTCAATTCGAACAACACCCTCTGCTATGATCCCTTCATCGAGGCCACTC
TAAATATCAAATATTCTACAACTTGGATCATCCTCGCCCCATCGGCTCTG
TTAGTAATAATGACTTTATTaacaatgtttgtttttttaatcaaccGAGA
AACTCCGATCGTCAAATTATCAAACCACAAAATGACCATAATACAGCTCA
TCAACCATTTATTATTGTTCATTCTACCAAGTTTCGTGTTCTTTCACACG
ACAACATTAATGTGTATCGGACGCCAAATCTTGCTTGGTCTTGCATTTAG
TATCACCTTATCAATCAACatttcaaaatcacaaaaactaTACATGATAG
TGGGcagcaaaatcaaaatgtcaCCTGTAGAAATCCTCATGACTAAAGCT
TCAGAATGGCTCATCATTGTCATAGCCATTATAATCAACACAGTATTAAA
CATTTTGTATTTCTTTAACAGCAAAAGGGTCACAATAGAagctaaatatt
ttgataatttgctAACAAAGGAGTTGTATTGTAGTAACAACATTATGATA
TACATTCAATTACTTTTTGCAGCTGTATTGTCCTTGTGCAGTGGAATCCA
AGGGTTCCGTGCTCGCAAACTACCTTCCCGTTTCCAAGAAACAAATCATG
TCATTTATTCATCCTTTATATCAACAGTTGTATTCGTGGCAGCAACTGGA
GTTTATTTCTCCCAACAATCAATGGTCAATCGTAGTTTCATTGTGCTACT
GGTCACAACTATATATAATGCAGcgcattttattttattatatggTTACA
AAACTTTCATTATAATTTTCAGACCACAAGTGAATACAAGAGAAGCTTTT
AATAAGATGCGACTACAGGAAATGGctttaaaaaataacaatttcacTTC
ATAACAAGATATTTGATAATATATCATAAGAATTGTAAATATTGATTAGT
TTG Coding sequence (CDS) from alignment at sc0000011:223631..226333 >TCONS_00001719 ID=TCONS_00001719|Name=TCONS_00001719|organism=Clytia hemisphaerica|type=CDS|length=2421bp|location=Sequence derived from alignment at sc0000011:223631..226333 (Clytia hemisphaerica)
atgtcaaaacttcTTTCAACTCATACACTAGTAATTCTAGCATTGGTATC
TGCCCAGTTTACAAGATCCAAGCGAATGGAGGGTCAATTTCTTGGACTGT
TAACATTGACCAGATGTCAACCAGAGCAGAAAAAGGAATGTCAACATGCT
CTAATGAATCAAGAATCAATCATCAAAGCTGATCAGCAACACCACTTCTG
GTTTAAAGTCAATCTATGTTTCAAAGATATGAGAAATAATTCCAATACTG
TGACAGATACTCTTCTACCGTTGGTAGTCGATGAAAGCTATTCTGGAATC
AaatgtgaaaacaaaaaaggagTTTACAAACAATCTGGACACATGACTCT
TGTATTTACTTATCTGTCATTTGATCTCACTCGCTTGGTTAGCTCAATGA
TCTTACCCCTCAATTCATTTAATCTGGTCAGTGTAACTGATCAACCGATG
TATCCAGCTTACTTCTTAGACCACCCTTTAGCTATCTATAGTTATGAATC
TAGCTTCGGTGTTAACATGCATActaattttattaaaatcaaaaataaac
tcAATATAACATATAATGCATTTTTCAACCTAAGAGATGAGAATCAAACT
TCAATTCGATCGACTAAAGAACTATGTGCAAACGACCCTTCTGCATCTGC
CATGTGTATTTATAGGAGCTTGAATCCAATGGATTGTTACAAGGAACTAA
ATATTGATGTACACGACCAGAATGCTATCAACAATGCATTAAATTTGCTG
ACAAGTTATAATCTCTCTTTTATCGTTCAAGCGGGTGATAGTACCTCAAT
TGATACTTTTTTACGAAAAGCTGGTCTCCAgggacagaaaatgaccaaaa
gactTTATTTACCGTTTGTTACTAAAACCATAAGTAGTTATGACCCAAAC
AGAGATTTATCATTCATGGAAAGTACAGTTTTAATAAACTTTCAAGGATC
AGGAGCAGTGAATCACTTTTTTATACTTTCTTTTAATCTACCGAACATTC
TCTTACAAGAGTTTAGAATAAAGCGTGAAAGCACCTGGGTGCTGTTCTTA
AAGGAGAAAAGGTTTCAAAATCGATTAAAGAATCTTTTTCCATGCTGGCA
GCTTAGATTTTTGGATATGACATACAGATGTGGAAATGATATCACACTAA
CTCAATTTTTCAGGATACCCATATCGTTCTTGAAAAGTGGTATAAATAGA
ATGCTCACTGAACAAGGTTGGGTTGAATTCTTGATTGTTTTCTGGAAATC
TATATACTACATTGCAAATGTTACTCCAGAAAATATTTTACGCGAGTCAC
AATGGTCATACAATCCTTCAATAGCTTTGAAAGCCAGACCTTATTGCGAT
GAAAGGAAACCACTTTGTCAAGCAGGCTATGaacttaaacattcttttta
TGAAGAGAAAGACTGGGATCAAAGCTATGGATGGAACTGTAAACTCTGTC
CAGACAAATTCTACAAGCCATATCAAGGGAATAAACAGCGCTGCCAAGAA
TGTTACTACCCAAACAGAGTCAATTCGAACAACACCCTCTGCTATGATCC
CTTCATCGAGGCCACTCTAAATATCAAATATTCTACAACTTGGATCATCC
TCGCCCCATCGGCTCTGTTAGTAATAATGACTTTATTaacaatgtttgtt
tttttaatcaaccGAGAAACTCCGATCGTCAAATTATCAAACCACAAAAT
GACCATAATACAGCTCATCAACCATTTATTATTGTTCATTCTACCAAGTT
TCGTGTTCTTTCACACGACAACATTAATGTGTATCGGACGCCAAATCTTG
CTTGGTCTTGCATTTAGTATCACCTTATCAATCAACatttcaaaatcaca
aaaactaTACATGATAGTGGGcagcaaaatcaaaatgtcaCCTGTAGAAA
TCCTCATGACTAAAGCTTCAGAATGGCTCATCATTGTCATAGCCATTATA
ATCAACACAGTATTAAACATTTTGTATTTCTTTAACAGCAAAAGGGTCAC
AATAGAagctaaatattttgataatttgctAACAAAGGAGTTGTATTGTA
GTAACAACATTATGATATACATTCAATTACTTTTTGCAGCTGTATTGTCC
TTGTGCAGTGGAATCCAAGGGTTCCGTGCTCGCAAACTACCTTCCCGTTT
CCAAGAAACAAATCATGTCATTTATTCATCCTTTATATCAACAGTTGTAT
TCGTGGCAGCAACTGGAGTTTATTTCTCCCAACAATCAATGGTCAATCGT
AGTTTCATTGTGCTACTGGTCACAACTATATATAATGCAGcgcattttat
tttattatatggTTACAAAACTTTCATTATAATTTTCAGACCACAAGTGA
ATACAAGAGAAGCTTTTAATAAGATGCGACTACAGGAAATGGctttaaaa
aataacaatttcacTTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001719-exon-sc0000011-1491911889:223631..226333 | TCONS_00001719-exon-sc0000011-1491911889:223631..226333 | Clytia hemisphaerica | exon |
| TCONS_00001719-exon-sc0000011-1510915933:223631..226333 | TCONS_00001719-exon-sc0000011-1510915933:223631..226333 | Clytia hemisphaerica | exon |
| TCONS_00001719-exon-sc0000011-1575043694:223631..226333 | TCONS_00001719-exon-sc0000011-1575043694:223631..226333 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:223631..226333 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00001719 vs. Swiss-Prot (Human)
Match: GRM7 (Metabotropic glutamate receptor 7 OS=Homo sapiens GN=GRM7 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.672e-17 Identity = 73/321 (22.74%), Postives = 145/321 (45.17%), Query Frame = -3
Query: 110 WNCKLCPDKFYKPYQGNKQRCQECYYPNRVNSNNTLCYD-PFIEATLNIKYSTTWIILAPSALLVIMTLLTMFVFLINRETPIVKLSNHKMTIIQLINHLLLFILPSFVFFHTTTLMCIGRQILLGLAFSITLSINISKSQKLYMIVGSKIKMSPVEILMTKASEWXXXXXXXXXXXXXXXLYF-FNSKRVTIEAKYFDNLLTKE----LYCS-NNIMIYIQLLFAAVLSLCSGIQGFRARKLPSRFQETNHVIYSSFISTVVFVAATGVYFSQQSMVNRSFIVLLVTTI----YNAAHFILLYGYKTFIIIFRPQVNTRE 1039
W C+ C D + YQ ++ CQ C Y R N N T C D P I+ + ++ + LA L +I T+ M F+ +TPIV+ S +++ + L L +I+ + +C R++ LGL I+ + ++K+ ++Y I K L++ S+ I I + + ++F + + I+ + ++ L C ++ I L ++ +L + + + R +P F E + ++ + + +V++A ++F + +I TI + +LY K +IIIF P++N ++
Sbjct: 543 WTCEPC-DGYQ--YQFDEMTCQHCPYDQRPNENRTGCQDIPIIKLEWHSPWAVIPVFLA--MLGIIATIFVMATFIRYNDTPIVRASGRELSYVLLTGIFLCYIITFLMIAKPDVAVCSFRRVFLGLGMCISYAALLTKTNRIYRIFEQGKKSVTAPRLISPTSQLAITSSLISVQLLGVFIWFGVDPPNIIIDYDEHKTMNPEQARGVLKCDITDLQIICSLGYSILLMVTCTVYAIKTRGVPENFNEAKPIGFTMYTTCIVWLAFIPIFFGTAQSAEKLYIQTTTLTISMNLSASVALGMLYMPKVYIIIFHPELNVQK 858
The following BLAST results are available for this feature:
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