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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001718 ID=TCONS_00001718|Name=TCONS_00001718|organism=Clytia hemisphaerica|type=transcript|length=1080bp
ATTTctataatattttcttttttgttggtAATATAAAAGAATTTACACAA
GGCATTGATGTTTCTAGCCTGATGTTGATGTTTTTTTAGTTCGGTGACCT
CGCAGACGGGctggatgtttttttttccgTCAATGATGTTCTCGGAGTTC
ATCGATTTTGAAGATGGGTTGGTGTTGTTCCCTTTTGCTGCACAGGTTGT
GCCGGGTTCTAGCTTGACCGATAGCAGGGATCTAGATGGTGTTCCTCCTG
ACCTGACATCAAATGTGTTATACAAACTCAAATCAAGCGTTCGTTCGATT
CAGCTGCAAGGTGTGTTTCAACGCCGGAGAGGATGTTGCTCTCGAACAAA
GCGCTGATACTTTCCACTAACTCCTGGCTTCGGCTGAGCCGACGAAAGCT
TGAGAAAAAGCGAGATTTTCCTTGTTGATGCAATGATTCTAGCTTAACGA
GGACTTTTCTCTCACGTGCTTGGAAGCGTGATTTGAAGTCTTCAAACATT
TTGATTGTGTTTTGTTGTTGGAACACGGTCACCTTCAATTTGTGGATCAA
CTTGGTGGTTTTGGCTGATTTCTTTTCAGCGGCTTTGCAAGTTTTCTTGA
GGTCTAGGGCCTGTTGTGAGAGCTCCTTATTGATGAATGACTTTTGCGTG
ATGAAGTCCGCTTGTTTGTCGACACGAGATTCCAAAGATTTGATCTTGCG
ATCAGCTTTGTCTAACTCGTTCAACATTTCGGAGCTCAATGCTTTCACCT
TGTTGACGCGTTCTTCTTGCTTTTGACATTCTTGTGTCACTTCAACGATC
TTTCGTTCACTTTCTACCTGCTTCTGTTCCAAGTTACTCGCTTTTTGAGT
ttgtttttgaagtttttcctcAAAAACTTCCGTGTGGTTTTGACTTTTTG
CAAACTTCTGTGTCATTTCGACAAGTTGTTTGCGCAAGTCTTCAATAGTT
GTTTGTTGGTCTTCATTGGCcagtttcaattttttgttttgatctacTTC
ATGTAGATACATCAAACGATATTCCTCAGAGGAATTGATACGATAATCTG
CAAAATTTCTCATTATTAATtaatattttg Run BLAST on NCBI protein sequence of TCONS_00001718-protein >TCONS_00001718-protein ID=TCONS_00001718-protein|Name=TCONS_00001718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MRNFADYRINSSEEYRLMYLHEVDQNKKLKLANEDQQTTIEDLRKQLVEM
TQKFAKSQNHTEVFEEKLQKQTQKASNLEQKQVESERKIVEVTQECQKQE
ERVNKVKALSSEMLNELDKADRKIKSLESRVDKQADFITQKSFINKELSQ
QALDLKKTCKAAEKKSAKTTKLIHKLKVTVFQQQNTIKMFEDFKSRFQAR
ERKVLVKLESLHQQGKSRFFSSFRRLSRSQELVESISALFESNILSGVET
HLAAESNERLI Run BLAST on NCBI transcript from alignment at sc0000011:187702..188781 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001718 ID=TCONS_00001718|Name=TCONS_00001718|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at sc0000011:187702..188781 (Clytia hemisphaerica)
caaaatattaATTAATAATGAGAAATTTTGCAGATTATCGTATCAATTCC
TCTGAGGAATATCGTTTGATGTATCTACATGAAgtagatcaaaacaaaaa
attgaaactgGCCAATGAAGACCAACAAACAACTATTGAAGACTTGCGCA
AACAACTTGTCGAAATGACACAGAAGTTTGCAAAAAGTCAAAACCACACG
GAAGTTTTTgaggaaaaacttcaaaaacaaACTCAAAAAGCGAGTAACTT
GGAACAGAAGCAGGTAGAAAGTGAACGAAAGATCGTTGAAGTGACACAAG
AATGTCAAAAGCAAGAAGAACGCGTCAACAAGGTGAAAGCATTGAGCTCC
GAAATGTTGAACGAGTTAGACAAAGCTGATCGCAAGATCAAATCTTTGGA
ATCTCGTGTCGACAAACAAGCGGACTTCATCACGCAAAAGTCATTCATCA
ATAAGGAGCTCTCACAACAGGCCCTAGACCTCAAGAAAACTTGCAAAGCC
GCTGAAAAGAAATCAGCCAAAACCACCAAGTTGATCCACAAATTGAAGGT
GACCGTGTTCCAACAACAAAACACAATCAAAATGTTTGAAGACTTCAAAT
CACGCTTCCAAGCACGTGAGAGAAAAGTCCTCGTTAAGCTAGAATCATTG
CATCAACAAGGAAAATCTCGCTTTTTCTCAAGCTTTCGTCGGCTCAGCCG
AAGCCAGGAGTTAGTGGAAAGTATCAGCGCTTTGTTCGAGAGCAACATCC
TCTCCGGCGTTGAAACACACCTTGCAGCTGAATCGAACGAACGCTTGATT
TGAGTTTGTATAACACATTTGATGTCAGGTCAGGAGGAACACCATCTAGA
TCCCTGCTATCGGTCAAGCTAGAACCCGGCACAACCTGTGCAGCAAAAGG
GAACAACACCAACCCATCTTCAAAATCGATGAACTCCGAGAACATCATTG
AcggaaaaaaaaacatccagCCCGTCTGCGAGGTCACCGAACTAAAAAAA
CATCAACATCAGGCTAGAAACATCAATGCCTTGTGTAAATTCTTTTATAT
TaccaacaaaaaagaaaatattatagAAAT Coding sequence (CDS) from alignment at sc0000011:187702..188781 >TCONS_00001718 ID=TCONS_00001718|Name=TCONS_00001718|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0000011:187702..188781 (Clytia hemisphaerica)
ATGAGAAATTTTGCAGATTATCGTATCAATTCCTCTGAGGAATATCGTTT
GATGTATCTACATGAAgtagatcaaaacaaaaaattgaaactgGCCAATG
AAGACCAACAAACAACTATTGAAGACTTGCGCAAACAACTTGTCGAAATG
ACACAGAAGTTTGCAAAAAGTCAAAACCACACGGAAGTTTTTgaggaaaa
acttcaaaaacaaACTCAAAAAGCGAGTAACTTGGAACAGAAGCAGGTAG
AAAGTGAACGAAAGATCGTTGAAGTGACACAAGAATGTCAAAAGCAAGAA
GAACGCGTCAACAAGGTGAAAGCATTGAGCTCCGAAATGTTGAACGAGTT
AGACAAAGCTGATCGCAAGATCAAATCTTTGGAATCTCGTGTCGACAAAC
AAGCGGACTTCATCACGCAAAAGTCATTCATCAATAAGGAGCTCTCACAA
CAGGCCCTAGACCTCAAGAAAACTTGCAAAGCCGCTGAAAAGAAATCAGC
CAAAACCACCAAGTTGATCCACAAATTGAAGGTGACCGTGTTCCAACAAC
AAAACACAATCAAAATGTTTGAAGACTTCAAATCACGCTTCCAAGCACGT
GAGAGAAAAGTCCTCGTTAAGCTAGAATCATTGCATCAACAAGGAAAATC
TCGCTTTTTCTCAAGCTTTCGTCGGCTCAGCCGAAGCCAGGAGTTAGTGG
AAAGTATCAGCGCTTTGTTCGAGAGCAACATCCTCTCCGGCGTTGAAACA
CACCTTGCAGCTGAATCGAACGAACGCTTGATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001718-exon-sc0000011-1491911889:187702..188781 | TCONS_00001718-exon-sc0000011-1491911889:187702..188781 | Clytia hemisphaerica | exon |
| TCONS_00001718-exon-sc0000011-1510915933:187702..188781 | TCONS_00001718-exon-sc0000011-1510915933:187702..188781 | Clytia hemisphaerica | exon |
| TCONS_00001718-exon-sc0000011-1575043694:187702..188781 | TCONS_00001718-exon-sc0000011-1575043694:187702..188781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:187702..188781 . |
Blast
The following BLAST results are available for this feature:
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