TCONS_00001717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001717
Unique NameTCONS_00001717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001717 ID=TCONS_00001717|Name=TCONS_00001717|organism=Clytia hemisphaerica|type=transcript|length=874bp
TTTAGAATTTGAATTCAATGTGTTTTTATtcgtttttaaataaattaata
aagtACAACAATACTGTATCTTGTAAGgcgtaaaaaaaataaaatactat
ttcagcggaaaataaaaaaagagctaaaaaaggaataaaaaaattaaaaa
ttgtgtacgtagaaaaaaacaaaggtaaaacttacaaaatatttccatat
aAAACTAACTAAAATTTTGTCCATAATCTAAGTGTTCCTGTTTTATTAAT
AAAATCAACATTCAAATTATTCGTGATAATACTTTCTACCGTGaggtcgg
gtaacttgcatcaggggagggaaacttgcatagtcgtcaaatgactgacc
aatcaaagatgcaaaatttcaaaacaaaggaactaCCCAGCTCCCCTCGA
AGCTATAGTCTACCattcttgttttgatttaactttgtattttaggtcat
tcattcatttgagggctatacaTATTAGCCTCTACTGTttcaagttaccc
gatctcacggtgtATTGCAGACCGTAGGAAACATATTCTACGCATGCTCT
CTCTGTGTAATGGCGAATAATCAACATCACCAGAAAAATTCGCAAGAATG
CAAAGAAAAACTCcattaaaaatgttcaaaatgatTCCTGTGTATTTCAT
AAACTTTCACAAGAGGAATATTTTGAGTAGTTAATTTAGTGGTCTGCTTA
ACCGCTAAAACGAAACGTCGCTGCTTTTTCACCATAACTTTGATGCTTGA
AAGTACGTCACGAGTCCAGGAATTTATCGCTGCTTTCGCGAAAATTTGCG
AGAAATAATTCCAACAAATCAATTGTTATCGATACGACCAAAGCACCAGT
ATCCATTGTTGTTAATTCTATATT
Run BLAST on NCBI

transcript from alignment at sc0000011:182862..183735

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001717 ID=TCONS_00001717|Name=TCONS_00001717|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at sc0000011:182862..183735 (Clytia hemisphaerica)
AATATAGAATTAACAACAATGGATACTGGTGCTTTGGTCGTATCGATAAC
AATTGATTTGTTGGAATTATTTCTCGCAAATTTTCGCGAAAGCAGCGATA
AATTCCTGGACTCGTGACGTACTTTCAAGCATCAAAGTTATGGTGAAAAA
GCAGCGACGTTTCGTTTTAGCGGTTAAGCAGACCACTAAATTAACTACTC
AAAATATTCCTCTTGTGAAAGTTTATGAAATACACAGGAatcattttgaa
catttttaatgGAGTTTTTCTTTGCATTCTTGCGAATTTTTCTGGTGATG
TTGATTATTCGCCATTACACAGAGAGAGCATGCGTAGAATATGTTTCCTA
CGGTCTGCAATacaccgtgagatcgggtaacttgaaACAGTAGAGGCTAA
TAtgtatagccctcaaatgaatgaatgacctaaaatacaaagttaaatca
aaacaagaatGGTAGACTATAGCTTCGAGGGGAGCTGGGtagttcctttg
ttttgaaattttgcatctttgattggtcagtcatttgacgactatgcaag
tttccctcccctgatgcaagttacccgacctCACGGTAGAAAGTATTATC
ACGAATAATTTGAATGTTGATTTTATTAATAAAACAGGAACACTTAGATT
ATGGACAAAATTTTAGTTAGTTTtatatggaaatattttgtaagttttac
ctttgtttttttctacgtacacaatttttaatttttttattcctttttta
gctctttttttattttccgctgaaatagtattttattttttttacgcCTT
ACAAGATACAGTATTGTTGTactttattaatttatttaaaaacgaATAAA
AACACATTGAATTCAAATTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000903XLOC_000903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001717-exon-sc0000011-1491911889:182862..183735TCONS_00001717-exon-sc0000011-1491911889:182862..183735Clytia hemisphaericaexon
TCONS_00001717-exon-sc0000011-1510915933:182862..183735TCONS_00001717-exon-sc0000011-1510915933:182862..183735Clytia hemisphaericaexon
TCONS_00001717-exon-sc0000011-1575043694:182862..183735TCONS_00001717-exon-sc0000011-1575043694:182862..183735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:182862..183735 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3871	1.56074	0.422839	0.354585	16.7633	12.4506	20.4398	20.4197	10.43	11.6385	7.40494	8.63398	5.21577	3.97956	4.30173	4.71395	4.44551	3.81761	4.25342	4.51024	3.09491	3.62301	4.2819	4.11532	2.29118	3.37396	4.82813	3.98164	6.80965	8.20488
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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