TCONS_00001716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001716
Unique NameTCONS_00001716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001716 ID=TCONS_00001716|Name=TCONS_00001716|organism=Clytia hemisphaerica|type=transcript|length=879bp
AAAATGAAAGAGTTAAAAAGGCTGGTGTTTCTAGCTTGCTGTTGATGGAT
TGTTCTTTTTTCAGAGTTCATCGAAGTTCATTGGGGGAAGATGTTGTGCC
CGCCTGCTCCTGGTTGATGAACTAGATGTTGTTTTTCGCTGCACAGGTTG
TACCGGATTCAAGCTTGACCGATAGCAGGAATCTAGATGGTGTTCCTCCT
GACCTGACATCAAATGTTCTCCACAAACTCAAATCAAGCGTTCGTTCGAT
TCAGCTGCAAGGTGTGTTTCAACGCCGGAGAGGATGTTGTTCTCGAACAA
AGCGCTGATGCTTTTTATTAACTCCTGGCTATGGCTGGCTCGACGAAAGT
TGGAGAAGGTACGAGATTTTCCTCCTTGGTGAATCTCCAAGGCTTCAAGA
TTGAAGAGGATTTTGCTCTCCCGTGCTTGGAAGCGAGATTGGAAGTCTTC
GTAAATTTTGATTGTGTTTTGTTGTTGGAACACGGTCACCTTCAATTCGT
GGATCAACTTGGTGGATTTGGCTGATTTCTTTTCAGCGGTTTTGCAAGTT
TTCTTGAGGTCTTGGACCTGTTGTGAGAGCTTCTTATTGATGAACGACCT
TTGCGTGATGAAGTCGACTTGTTTGTCGACACGAGATTCCAAAGATTGGA
TCTTGCGATCAGCTTTATCTAATTCGTCCAGCATTTCGGCGCTCAATGCT
TTCACTTTTTTGACGCGTTCTTCTTGCTTTTGACATTCTTGTGTCACTTC
GACAATCTTTCGTTCACTTTCTACCTGCTTCTGTTCCAAGTTACTCGCTT
TTTGAGTttgtttttgaagtttttcttccAAAACTTCCGtgttgttttga
ctttttgcaAACTTCTGTGTCATTTCGAC
Run BLAST on NCBI

protein sequence of TCONS_00001716-protein

>TCONS_00001716-protein ID=TCONS_00001716-protein|Name=TCONS_00001716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
VEMTQKFAKSQNNTEVLEEKLQKQTQKASNLEQKQVESERKIVEVTQECQ
KQEERVKKVKALSAEMLDELDKADRKIQSLESRVDKQVDFITQRSFINKK
LSQQVQDLKKTCKTAEKKSAKSTKLIHELKVTVFQQQNTIKIYEDFQSRF
QARESKILFNLEALEIHQGGKSRTFSNFRRASHSQELIKSISALFENNIL
SGVETHLAAESNERLI
Run BLAST on NCBI

transcript from alignment at sc0000011:162690..163568

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001716 ID=TCONS_00001716|Name=TCONS_00001716|organism=Clytia hemisphaerica|type=transcript|length=879bp|location=Sequence derived from alignment at sc0000011:162690..163568 (Clytia hemisphaerica)
GTCGAAATGACACAGAAGTTtgcaaaaagtcaaaacaacaCGGAAGTTTT
ggaagaaaaacttcaaaaacaaACTCAAAAAGCGAGTAACTTGGAACAGA
AGCAGGTAGAAAGTGAACGAAAGATTGTCGAAGTGACACAAGAATGTCAA
AAGCAAGAAGAACGCGTCAAAAAAGTGAAAGCATTGAGCGCCGAAATGCT
GGACGAATTAGATAAAGCTGATCGCAAGATCCAATCTTTGGAATCTCGTG
TCGACAAACAAGTCGACTTCATCACGCAAAGGTCGTTCATCAATAAGAAG
CTCTCACAACAGGTCCAAGACCTCAAGAAAACTTGCAAAACCGCTGAAAA
GAAATCAGCCAAATCCACCAAGTTGATCCACGAATTGAAGGTGACCGTGT
TCCAACAACAAAACACAATCAAAATTTACGAAGACTTCCAATCTCGCTTC
CAAGCACGGGAGAGCAAAATCCTCTTCAATCTTGAAGCCTTGGAGATTCA
CCAAGGAGGAAAATCTCGTACCTTCTCCAACTTTCGTCGAGCCAGCCATA
GCCAGGAGTTAATAAAAAGCATCAGCGCTTTGTTCGAGAACAACATCCTC
TCCGGCGTTGAAACACACCTTGCAGCTGAATCGAACGAACGCTTGATTTG
AGTTTGTGGAGAACATTTGATGTCAGGTCAGGAGGAACACCATCTAGATT
CCTGCTATCGGTCAAGCTTGAATCCGGTACAACCTGTGCAGCGAAAAACA
ACATCTAGTTCATCAACCAGGAGCAGGCGGGCACAACATCTTCCCCCAAT
GAACTTCGATGAACTCTGAAAAAAGAACAATCCATCAACAGCAAGCTAGA
AACACCAGCCTTTTTAACTCTTTCATTTT

Coding sequence (CDS) from alignment at sc0000011:162690..163568

>TCONS_00001716 ID=TCONS_00001716|Name=TCONS_00001716|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at sc0000011:162690..163568 (Clytia hemisphaerica)
GTCGAAATGACACAGAAGTTtgcaaaaagtcaaaacaacaCGGAAGTTTT
ggaagaaaaacttcaaaaacaaACTCAAAAAGCGAGTAACTTGGAACAGA
AGCAGGTAGAAAGTGAACGAAAGATTGTCGAAGTGACACAAGAATGTCAA
AAGCAAGAAGAACGCGTCAAAAAAGTGAAAGCATTGAGCGCCGAAATGCT
GGACGAATTAGATAAAGCTGATCGCAAGATCCAATCTTTGGAATCTCGTG
TCGACAAACAAGTCGACTTCATCACGCAAAGGTCGTTCATCAATAAGAAG
CTCTCACAACAGGTCCAAGACCTCAAGAAAACTTGCAAAACCGCTGAAAA
GAAATCAGCCAAATCCACCAAGTTGATCCACGAATTGAAGGTGACCGTGT
TCCAACAACAAAACACAATCAAAATTTACGAAGACTTCCAATCTCGCTTC
CAAGCACGGGAGAGCAAAATCCTCTTCAATCTTGAAGCCTTGGAGATTCA
CCAAGGAGGAAAATCTCGTACCTTCTCCAACTTTCGTCGAGCCAGCCATA
GCCAGGAGTTAATAAAAAGCATCAGCGCTTTGTTCGAGAACAACATCCTC
TCCGGCGTTGAAACACACCTTGCAGCTGAATCGAACGAACGCTTGATTTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000902XLOC_000902Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001716-exon-sc0000011-1491911889:162690..163568TCONS_00001716-exon-sc0000011-1491911889:162690..163568Clytia hemisphaericaexon
TCONS_00001716-exon-sc0000011-1510915933:162690..163568TCONS_00001716-exon-sc0000011-1510915933:162690..163568Clytia hemisphaericaexon
TCONS_00001716-exon-sc0000011-1575043694:162690..163568TCONS_00001716-exon-sc0000011-1575043694:162690..163568Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001716-proteinTCONS_00001716-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:162690..163568 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0586564	0.234358	0.307725	0.136156	0.254935	0.178486	0.331626	0.107295	0.0352656	0	0	0.0300678	0	0	0.0407432	0	0	0.0511969	0	0	0.110395	0.324168	0.178266	0.0726075	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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