TCONS_00001715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001715
Unique NameTCONS_00001715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001715 ID=TCONS_00001715|Name=TCONS_00001715|organism=Clytia hemisphaerica|type=transcript|length=1272bp
ctttttttcaacacttttcaaaataatttataaactttttttgggTCGAA
TAAAATAATCATAATTCATCTGTACATGCTAAtattaataacaataataa
aagggataataatttttaaatcgtaaaagacaataacaataaacaaaaga
ataaaatatataacaaaaaaatctaaatttttctaACAACAAGCCTCGAA
TTCacgcaaaattgaaaattttgataagcAACTTCTGTCGAAAAAAAAGA
CCGGGGGTAGAAAATTTAATTTCGGTTTTAAAATGCTTCCTATCTATTCA
CATGTAAACAATATCTTACCATTTATCTACTTAATTTACATGTGCATGGG
GCTTTAATCTTACTATCTACCTATTTACATGTTAGAAAAAAAGTGCGGTT
AAGTCAAAATAAGAATGCCCGCAATCTTTCATAGGGCGTGGTTGACTTTC
ATGcaatttaaattcatattctgtAAAAACGTGTTcatttctgataaatc
tacaaaaaTAAAGTTGTTATAGCTAGGCGGTGGACATTTCGCATTTAGCA
GATTCGGAAATATGCATTTCAAAGGTTCTTTCACATTTCAACTGCAGAGG
AATCAGCAGAAAGCGACTAGATGATTGAGCCAAGTTTGCAACAATCGTAA
CAGAACGATTTTTAAATCTTCCTTAAgccaaaagaaaagaaatttgcttC
TAACATCCTCATAACGTCCTCCGCCATTAAACTTAACAATAACAGTTTgc
taaaaaataaacttttttttcttcatgagAGTAAAATAGTTAAATAATAA
AACATAAATTTGTCTTTTATATGAAcattaaaacacttaaaattgTACAA
ACAGGAACAAAGTTCGCAGCTCTCACACAAAAAGAATATTTAGAATTCAG
GTCCCACGCCACCgttttttacaaagtaaaattttttggttgcgcctcct
tagactctatattcattgcccccgcccactttcaatttcatggcgTGGGC
CCTGGAAATTGAAAAGgacataccgtattacttcgaataaacgcccgggg
cgtttattaaattttttcgattttaggaggggcgtttattcgaagggggc
gtttaaaagaagggggcgtttattgaattattttagtctaaagTCGAATA
TTTAGAACAAATATATCCTTTGTTTTAGTTCTTTATCaggattttagtgc
aaaatttctttggttcaacgattgaaattgcatcgaaaactgctttggtt
acaagaaatgactaaaatcttc
Run BLAST on NCBI

transcript from alignment at sc0000011:153892..155163

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001715 ID=TCONS_00001715|Name=TCONS_00001715|organism=Clytia hemisphaerica|type=transcript|length=1272bp|location=Sequence derived from alignment at sc0000011:153892..155163 (Clytia hemisphaerica)
gaagattttagtcatttcttgtaaccaaagcagttttcgatgcaatttca atcgttgaaccaaagaaattttgcactaaaatcctGATAAAGAACTAAAA CAAAGGATATATTTGTTCTAAATATTCGActttagactaaaataattcaa taaacgcccccttcttttaaacgcccccttcgaataaacgcccctcctaa aatcgaaaaaatttaataaacgccccgggcgtttattcgaagtaatacgg tatgtcCTTTTCAATTTCCAGGGCCCAcgccatgaaattgaaagtgggcg ggggcaatgaatatagagtctaaggaggcgcaaccaaaaaattttacttt gtaaaaaacGGTGGCGTGGGACCTGAATTCTAAATATTCTTTTTGTGTGA GAGCTGCGAACTTTGTTCCTGTTTGTAcaattttaagtgttttaatgTTC ATATAAAAGACAAATTTATGTTTTATTATTTAACTATTTTACTctcatga agaaaaaaaagtttattttttagcAAACTGTTATTGTTAAGTTTAATGGC GGAGGACGTTATGAGGATGTTAGaagcaaatttcttttcttttggcTTAA GGAAGATTTAAAAATCGTTCTGTTACGATTGTTGCAAACTTGGCTCAATC ATCTAGTCGCTTTCTGCTGATTCCTCTGCAGTTGAAATGTGAAAGAACCT TTGAAATGCATATTTCCGAATCTGCTAAATGCGAAATGTCCACCGCCTAG CTATAACAACTTTAtttttgtagatttatcagaaatgAACACGTTTTTac agaatatgaatttaaattgCATGAAAGTCAACCACGCCCTATGAAAGATT GCGGGCATTCTTATTTTGACTTAACCGCACTTTTTTTCTAACATGTAAAT AGGTAGATAGTAAGATTAAAGCCCCATGCACATGTAAATTAAGTAGATAA ATGGTAAGATATTGTTTACATGTGAATAGATAGGAAGCATTTTAAAACCG AAATTAAATTTTCTACCCCCGGTCTTTTTTTTCGACAGAAGTTgcttatc aaaattttcaattttgcgtGAATTCGAGGCTTGTTGTtagaaaaatttag atttttttgttatatattttattcttttgtttattgttattgtcttttac gatttaaaaattattatcccttttattattgttattaataTTAGCATGTA CAGATGAATTATGATTATTTTATTCGAcccaaaaaaagtttataaattat tttgaaaagtgttgaaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000901XLOC_000901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001715-exon-sc0000011-1491911889:153892..155163TCONS_00001715-exon-sc0000011-1491911889:153892..155163Clytia hemisphaericaexon
TCONS_00001715-exon-sc0000011-1510915933:153892..155163TCONS_00001715-exon-sc0000011-1510915933:153892..155163Clytia hemisphaericaexon
TCONS_00001715-exon-sc0000011-1575043694:153892..155163TCONS_00001715-exon-sc0000011-1575043694:153892..155163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:153892..155163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.346721 0.316359 0.140056 0.378969 4.79172 2.51634 4.84989 5.71013 4.04337 2.44889 5.68978 2.79071 4.1257 2.46489 1.36427 1.92631 4.66074 5.25648 3.97552 3.36812 10.6063 9.98358 3.32353 4.06319 4.37792 7.86797 8.4179 6.21298 3.84749 4.21431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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