TCONS_00001714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001714
Unique NameTCONS_00001714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001714 ID=TCONS_00001714|Name=TCONS_00001714|organism=Clytia hemisphaerica|type=transcript|length=371bp
CAGGTTTTCGCAGTTACATGTCAACAAAGCCATGTGCTCAAACTTTTTct
gtactttttcaaatttgcgaaaattatAGACTTTATTTTTTCCCTTAATT
CTTTACTGCTTCAATTGGATTCTTAGAAATCCATAAAGATGTAACCTATT
CTAGTCTCTCATAGTAAGTATTTTTTTGAAGGAGCATTTATTTTTAACTC
TAGTAGTAGTAAGTAGAATGGTCGATGGTGGCTTGCCAAAAATTACAAAC
TGAAAAGTAGCTTGGAGATCCATGCTTATGattgtttcttttatatacTA
ATGGCGAAATGAATAGCGTGGTTTGGGCTATGAGTTTGAATTTCCAAGAT
TGTAACAACAGTTGTAAACAC
Run BLAST on NCBI

transcript from alignment at sc0000011:140650..141020

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001714 ID=TCONS_00001714|Name=TCONS_00001714|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at sc0000011:140650..141020 (Clytia hemisphaerica)
GTGTTTACAACTGTTGTTACAATCTTGGAAATTCAAACTCATAGCCCAAA
CCACGCTATTCATTTCGCCATTAgtatataaaagaaacaatCATAAGCAT
GGATCTCCAAGCTACTTTTCAGTTTGTAATTTTTGGCAAGCCACCATCGA
CCATTCTACTTACTACTACTAGAGTTAAAAATAAATGCTCCTTCAAAAAA
ATACTTACTATGAGAGACTAGAATAGGTTACATCTTTATGGATTTCTAAG
AATCCAATTGAAGCAGTAAAGAATTAAGGGAAAAAATAAAGTCTataatt
ttcgcaaatttgaaaaagtacagAAAAAGTTTGAGCACATGGCTTTGTTG
ACATGTAACTGCGAAAACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000900XLOC_000900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001714-exon-sc0000011-1491911889:140650..141020TCONS_00001714-exon-sc0000011-1491911889:140650..141020Clytia hemisphaericaexon
TCONS_00001714-exon-sc0000011-1510915933:140650..141020TCONS_00001714-exon-sc0000011-1510915933:140650..141020Clytia hemisphaericaexon
TCONS_00001714-exon-sc0000011-1575043694:140650..141020TCONS_00001714-exon-sc0000011-1575043694:140650..141020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:140650..141020 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.437997	0.427116	0.743884	0	0.295332	0.700125	0.281557	0.790771	0	0.457179	0	1.31267	0.582596	1.21006	0.248709	0.533806	0.657605	0	0	1.94887	2.54088	1.54919	0.251099	0.684857	0.235129	0	1.20116	0	0.486142	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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