TCONS_00001710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001710
Unique NameTCONS_00001710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001710 ID=TCONS_00001710|Name=TCONS_00001710|organism=Clytia hemisphaerica|type=transcript|length=610bp
gttctgaatgattgtttaatggtcacgcttatgtagatatcaattatata
tgtgttaaatgcataaccaggtaggtccataaaagtatcacttgtttact
ttttactgTAGTCGATGACAAGAAATCAACTCCACAGCCCAGATACATCT
TACACCATGTTTTATACGAAAACATCTACCAATCCCTAAAGAGAAATCCG
TCTCTTGGTTTCTTGTTTCTTGTTGGACtccagaaaaatcaaaatgctAT
GAATTGGTTCCAGCAAAGAGGTGTAAAAGAGGAAAGAACTGTTTCTAGTC
TGTTGACGAACGACGTCACATCCGTTTACCAACCGTTTGTGGTCTTTGAG
CAAGGCAAGGATAACCCGTACTGGGATGATCAAATGATACTTGAGTATTC
CATCCGGATATTAGATCGATTTATCTATAGTATAAAACACAGACCAGAAT
GGacagaaaaagataaaaatattgtCTTGGAATATATTGGAGAGACTAAT
AATAAAGGTAACGATAAACTGACTATTTTGGTCAATAAAATTCGTGatat
attttaataattttagaataggctttgaaattttacaatttttaaatttt
atatttttac
Run BLAST on NCBI

protein sequence of TCONS_00001710-protein

>TCONS_00001710-protein ID=TCONS_00001710-protein|Name=TCONS_00001710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MNWFQQRGVKEERTVSSLLTNDVTSVYQPFVVFEQGKDNPYWDDQMILEY
SIRILDRFIYSIKHRPEWTEKDKNIVLEYIGETNNKGNDKLTILVNKIRD
IF
Run BLAST on NCBI

transcript from alignment at sc0000011:117988..118597

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001710 ID=TCONS_00001710|Name=TCONS_00001710|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at sc0000011:117988..118597 (Clytia hemisphaerica)
gtaaaaatataaaatttaaaaattgtaaaatttcaaagcctattctaaaa
ttattaaaatatatCACGAATTTTATTGACCAAAATAGTCAGTTTATCGT
TACCTTTATTATTAGTCTCTCCAATATATTCCAAGacaatatttttatct
ttttctgtCCATTCTGGTCTGTGTTTTATACTATAGATAAATCGATCTAA
TATCCGGATGGAATACTCAAGTATCATTTGATCATCCCAGTACGGGTTAT
CCTTGCCTTGCTCAAAGACCACAAACGGTTGGTAAACGGATGTGACGTCG
TTCGTCAACAGACTAGAAACAGTTCTTTCCTCTTTTACACCTCTTTGCTG
GAACCAATTCATagcattttgatttttctggaGTCCAACAAGAAACAAGA
AACCAAGAGACGGATTTCTCTTTAGGGATTGGTAGATGTTTTCGTATAAA
ACATGGTGTAAGATGTATCTGGGCTGTGGAGTTGATTTCTTGTCATCGAC
TAcagtaaaaagtaaacaagtgatacttttatggacctacctggttatgc
atttaacacatatataattgatatctacataagcgtgaccattaaacaat
cattcagaac

Coding sequence (CDS) from alignment at sc0000011:117988..118597

>TCONS_00001710 ID=TCONS_00001710|Name=TCONS_00001710|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000011:117988..118597 (Clytia hemisphaerica)
ttaaaatatatCACGAATTTTATTGACCAAAATAGTCAGTTTATCGTTAC
CTTTATTATTAGTCTCTCCAATATATTCCAAGacaatatttttatctttt
tctgtCCATTCTGGTCTGTGTTTTATACTATAGATAAATCGATCTAATAT
CCGGATGGAATACTCAAGTATCATTTGATCATCCCAGTACGGGTTATCCT
TGCCTTGCTCAAAGACCACAAACGGTTGGTAAACGGATGTGACGTCGTTC
GTCAACAGACTAGAAACAGTTCTTTCCTCTTTTACACCTCTTTGCTGGAA
CCAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000896XLOC_000896Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001710-proteinTCONS_00001710-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001710-exon-sc0000011-1491911889:117988..118597TCONS_00001710-exon-sc0000011-1491911889:117988..118597Clytia hemisphaericaexon
TCONS_00001710-exon-sc0000011-1510915933:117988..118597TCONS_00001710-exon-sc0000011-1510915933:117988..118597Clytia hemisphaericaexon
TCONS_00001710-exon-sc0000011-1575043694:117988..118597TCONS_00001710-exon-sc0000011-1575043694:117988..118597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:117988..118597 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.15151	2.29857	4.06883	2.65607	35.2047	28.4048	18.3402	18.7913	8.51951	12.0292	10.2163	6.3972	7.80909	6.63375	9.64794	11.3959	12.0219	10.5211	3.55373	4.33388	9.41647	8.67123	14.711	11.6765	9.79429	11.4765	7.1667	3.9793	10.4003	12.8804
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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