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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001709 ID=TCONS_00001709|Name=TCONS_00001709|organism=Clytia hemisphaerica|type=transcript|length=1370bp
aaattatcagcttttttctttgttcagtaatgttcttttaaattttctta
catGTTTTCTGAAGTCTTTTCGTTTGAAGAAATACAGGAGAGGGTTCAAG
AAGCTGTTTATCAGTGGTAACAACGTAAACACACGAAACGCCTCACCCGT
CGAACACCAAGTACCTGAGACCAGACCTGCAATGTGTATGCTGACAGGTA
ACATACAGCTTATATAGATGATCGTAAAAAGTAAGCATATGAGACAGgta
agatatttttgtttggatCTCAAATGTGATTTTCTCCAGCGCTGAAGAAG
TGACCTTGATGGATGTTTAAAAGGTGATTTGTCTCTATCAGATCGGATAG
CTCCAACACTGGACTCTCCTTCGTCACTTATGGTGCCAGTTGTAGACGCC
CTCTCACGTAGAGGCGGTAAAATCAAAGTCGAACGATGCAAGGGTGTTAC
ACCCAAAGATTTCGCCCTCCTTGTCAATCCCCTTGGTTGTAAAAGTAACT
TAGGCTGTTGTTCAATATTATTCTGTTTTAAATCTTCTACATCATGTTTA
GTACTGTCATCTTGAGGTATAATTTCAGGCAGAGGAGCAATAGTAGAGTT
ACAATTGATATCAGTGGCCGGCGAATCCTGTATACGAGCATGACATGACA
TATTGCGACTGACTTCCTCCTGGCCACCACCGTTCTGTAAAGTACTTTTT
ATCATGCTCTGAATTCTTGGTTTCACTTTATTTGAAGCTTTTATTGCTTT
CAAAAATAGTACAGTGTTTGATGTAAACAAAACCATAACGATCAAAGTCA
CTATTGCGATAAAACTGATATACATAAAATACATTGAAAGGCTTGTTTCA
CCCATTAGTACACTTGTCACACCTAAGGAAATAGGTATCACCCAGACAAC
GACTATAGACTTGATAACTTTATCTCTTGATATGAAAGAGTgatatttta
aaggtttttgtaCGGCTACCAGTCTATCCAACGTCATTATAATTAGTGTT
AATCCAGAAATAAGTATGGCTACGCATAATGGTGAAATCAAGTAACTGTT
ATAAGTTGAAATTTTATCACCGATATTTTGAGCTAATACAGCACCGACTA
CGATGGTTACGATTGGGACTAGTAAATCAGCGATACTTAAGGACAAGATT
AAtagattgttattgttttgacaAAGTCTACGGAACCGGAGAAAAGTCAA
GATGGTTAACAAGTTGATACCAATGGTGAATGCACATATGATTCCAACGG
GTATGTAATAGATAGAACTACCAGAGATTAGAATAAAATCACTACAATGA
AGTGATATTTCAGTGTGGGGTGGGTGTGTTGTGGTACTATTACCACTGTC
AATCAGATGTTGTTCCTCCA Run BLAST on NCBI protein sequence of TCONS_00001709-protein >TCONS_00001709-protein ID=TCONS_00001709-protein|Name=TCONS_00001709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
EEQHLIDSGNSTTTHPPHTEISLHCSDFILISGSSIYYIPVGIICAFTIG
INLLTILTFLRFRRLCQNNNNLLILSLSIADLLVPIVTIVVGAVLAQNIG
DKISTYNSYLISPLCVAILISGLTLIIMTLDRLVAVQKPLKYHSFISRDK
VIKSIVVVWVIPISLGVTSVLMGETSLSMYFMYISFIAIVTLIVMVLFTS
NTVLFLKAIKASNKVKPRIQSMIKSTLQNGGGQEEVSRNMSCHARIQDSP
ATDINCNSTIAPLPEIIPQDDSTKHDVEDLKQNNIEQQPKLLLQPRGLTR
RAKSLGVTPLHRSTLILPPLRERASTTGTISDEGESSVGAIRSDRDKSPF
KHPSRSLLQRWRKSHLRSKQKYLTCLICLLFTIIYISCMLPVSIHIAGLV
SGTWCSTGEAFRVFTLLPLINSFLNPLLYFFKRKDFRKHVRKFKRTLLNK
EKS Run BLAST on NCBI transcript from alignment at sc0000011:116303..117672 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001709 ID=TCONS_00001709|Name=TCONS_00001709|organism=Clytia hemisphaerica|type=transcript|length=1370bp|location=Sequence derived from alignment at sc0000011:116303..117672 (Clytia hemisphaerica)
TGGAGGAACAACATCTGATTGACAGTGGTAATAGTACCACAACACACCCA
CCCCACACTGAAATATCACTTCATTGTAGTGATTTTATTCTAATCTCTGG
TAGTTCTATCTATTACATACCCGTTGGAATCATATGTGCATTCACCATTG
GTATCAACTTGTTAACCATCTTGACTTTTCTCCGGTTCCGTAGACTTtgt
caaaacaataacaatctaTTAATCTTGTCCTTAAGTATCGCTGATTTACT
AGTCCCAATCGTAACCATCGTAGTCGGTGCTGTATTAGCTCAAAATATCG
GTGATAAAATTTCAACTTATAACAGTTACTTGATTTCACCATTATGCGTA
GCCATACTTATTTCTGGATTAACACTAATTATAATGACGTTGGATAGACT
GGTAGCCGtacaaaaacctttaaaatatcACTCTTTCATATCAAGAGATA
AAGTTATCAAGTCTATAGTCGTTGTCTGGGTGATACCTATTTCCTTAGGT
GTGACAAGTGTACTAATGGGTGAAACAAGCCTTTCAATGTATTTTATGTA
TATCAGTTTTATCGCAATAGTGACTTTGATCGTTATGGTTTTGTTTACAT
CAAACACTGTACTATTTTTGAAAGCAATAAAAGCTTCAAATAAAGTGAAA
CCAAGAATTCAGAGCATGATAAAAAGTACTTTACAGAACGGTGGTGGCCA
GGAGGAAGTCAGTCGCAATATGTCATGTCATGCTCGTATACAGGATTCGC
CGGCCACTGATATCAATTGTAACTCTACTATTGCTCCTCTGCCTGAAATT
ATACCTCAAGATGACAGTACTAAACATGATGTAGAAGATTTAAAACAGAA
TAATATTGAACAACAGCCTAAGTTACTTTTACAACCAAGGGGATTGACAA
GGAGGGCGAAATCTTTGGGTGTAACACCCTTGCATCGTTCGACTTTGATT
TTACCGCCTCTACGTGAGAGGGCGTCTACAACTGGCACCATAAGTGACGA
AGGAGAGTCCAGTGTTGGAGCTATCCGATCTGATAGAGACAAATCACCTT
TTAAACATCCATCAAGGTCACTTCTTCAGCGCTGGAGAAAATCACATTTG
AGatccaaacaaaaatatcttacCTGTCTCATATGCTTACTTTTTACGAT
CATCTATATAAGCTGTATGTTACCTGTCAGCATACACATTGCAGGTCTGG
TCTCAGGTACTTGGTGTTCGACGGGTGAGGCGTTTCGTGTGTTTACGTTG
TTACCACTGATAAACAGCTTCTTGAACCCTCTCCTGTATTTCTTCAAACG
AAAAGACTTCAGAAAACatgtaagaaaatttaaaagaacattactgaaca
aagaaaaaagctgataattt Coding sequence (CDS) from alignment at sc0000011:116303..117672 >TCONS_00001709 ID=TCONS_00001709|Name=TCONS_00001709|organism=Clytia hemisphaerica|type=CDS|length=1362bp|location=Sequence derived from alignment at sc0000011:116303..117672 (Clytia hemisphaerica)
GAGGAACAACATCTGATTGACAGTGGTAATAGTACCACAACACACCCACC
CCACACTGAAATATCACTTCATTGTAGTGATTTTATTCTAATCTCTGGTA
GTTCTATCTATTACATACCCGTTGGAATCATATGTGCATTCACCATTGGT
ATCAACTTGTTAACCATCTTGACTTTTCTCCGGTTCCGTAGACTTtgtca
aaacaataacaatctaTTAATCTTGTCCTTAAGTATCGCTGATTTACTAG
TCCCAATCGTAACCATCGTAGTCGGTGCTGTATTAGCTCAAAATATCGGT
GATAAAATTTCAACTTATAACAGTTACTTGATTTCACCATTATGCGTAGC
CATACTTATTTCTGGATTAACACTAATTATAATGACGTTGGATAGACTGG
TAGCCGtacaaaaacctttaaaatatcACTCTTTCATATCAAGAGATAAA
GTTATCAAGTCTATAGTCGTTGTCTGGGTGATACCTATTTCCTTAGGTGT
GACAAGTGTACTAATGGGTGAAACAAGCCTTTCAATGTATTTTATGTATA
TCAGTTTTATCGCAATAGTGACTTTGATCGTTATGGTTTTGTTTACATCA
AACACTGTACTATTTTTGAAAGCAATAAAAGCTTCAAATAAAGTGAAACC
AAGAATTCAGAGCATGATAAAAAGTACTTTACAGAACGGTGGTGGCCAGG
AGGAAGTCAGTCGCAATATGTCATGTCATGCTCGTATACAGGATTCGCCG
GCCACTGATATCAATTGTAACTCTACTATTGCTCCTCTGCCTGAAATTAT
ACCTCAAGATGACAGTACTAAACATGATGTAGAAGATTTAAAACAGAATA
ATATTGAACAACAGCCTAAGTTACTTTTACAACCAAGGGGATTGACAAGG
AGGGCGAAATCTTTGGGTGTAACACCCTTGCATCGTTCGACTTTGATTTT
ACCGCCTCTACGTGAGAGGGCGTCTACAACTGGCACCATAAGTGACGAAG
GAGAGTCCAGTGTTGGAGCTATCCGATCTGATAGAGACAAATCACCTTTT
AAACATCCATCAAGGTCACTTCTTCAGCGCTGGAGAAAATCACATTTGAG
atccaaacaaaaatatcttacCTGTCTCATATGCTTACTTTTTACGATCA
TCTATATAAGCTGTATGTTACCTGTCAGCATACACATTGCAGGTCTGGTC
TCAGGTACTTGGTGTTCGACGGGTGAGGCGTTTCGTGTGTTTACGTTGTT
ACCACTGATAAACAGCTTCTTGAACCCTCTCCTGTATTTCTTCAAACGAA
AAGACTTCAGAAAACatgtaagaaaatttaaaagaacattactgaacaaa
gaaaaaagctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001709-exon-sc0000011-1491911889:116303..117672 | TCONS_00001709-exon-sc0000011-1491911889:116303..117672 | Clytia hemisphaerica | exon |
| TCONS_00001709-exon-sc0000011-1510915933:116303..117672 | TCONS_00001709-exon-sc0000011-1510915933:116303..117672 | Clytia hemisphaerica | exon |
| TCONS_00001709-exon-sc0000011-1575043694:116303..117672 | TCONS_00001709-exon-sc0000011-1575043694:116303..117672 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:116303..117672 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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