TCONS_00001708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001708
Unique NameTCONS_00001708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001708 ID=TCONS_00001708|Name=TCONS_00001708|organism=Clytia hemisphaerica|type=transcript|length=371bp
TATGGAATGGTCCAATTTCGCTTTGTTTCTTTTTCTAGTTGAGATTCAAC
TGAAGCCTTCGTTGGAACAGATTCAAGCTAACGAAAGATACAAAGCCGAG
TACAAGGAAATGGAAACAGAACTATTACACGTGGAAGCCAAACATAAAGA
GATGGAAATGTTAGTGCAAGGCATGACgggaataaaaaacaaattttgtg
aaAAGATGAATTTATTCAAATCGAATGATCATGTTCTAGCTCGTGAAAAC
GTTCGAAAGAAAATCGACGAGGTTTGTAATCTTGagattagtggtgaaat
tttcaatttatattATGAAACTAACCAGCaaaaaaaagaagttgaaaAAC
TGTTACCGATGCACAAGGTCA
Run BLAST on NCBI

protein sequence of TCONS_00001708-protein

>TCONS_00001708-protein ID=TCONS_00001708-protein|Name=TCONS_00001708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MEWSNFALFLFLVEIQLKPSLEQIQANERYKAEYKEMETELLHVEAKHKE
MEMLVQGMTGIKNKFCEKMNLFKSNDHVLARENVRKKIDEVCNLEISGEI
FNLYYETNQQKKEVEKLLPMHKV
Run BLAST on NCBI

transcript from alignment at sc0000011:89318..89688

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001708 ID=TCONS_00001708|Name=TCONS_00001708|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at sc0000011:89318..89688 (Clytia hemisphaerica)
TGACCTTGTGCATCGGTAACAGTTtttcaacttcttttttttGCTGGTTA
GTTTCATaatataaattgaaaatttcaccactaatctCAAGATTACAAAC
CTCGTCGATTTTCTTTCGAACGTTTTCACGAGCTAGAACATGATCATTCG
ATTTGAATAAATTCATCTTttcacaaaatttgttttttattcccGTCATG
CCTTGCACTAACATTTCCATCTCTTTATGTTTGGCTTCCACGTGTAATAG
TTCTGTTTCCATTTCCTTGTACTCGGCTTTGTATCTTTCGTTAGCTTGAA
TCTGTTCCAACGAAGGCTTCAGTTGAATCTCAACTAGAAAAAGAAACAAA
GCGAAATTGGACCATTCCATA

Coding sequence (CDS) from alignment at sc0000011:89318..89688

>TCONS_00001708 ID=TCONS_00001708|Name=TCONS_00001708|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0000011:89318..89688 (Clytia hemisphaerica)
GACCTTGTGCATCGGTAACAGTTtttcaacttcttttttttGCTGGTTAG
TTTCATaatataaattgaaaatttcaccactaatctCAAGATTACAAACC
TCGTCGATTTTCTTTCGAACGTTTTCACGAGCTAGAACATGATCATTCGA
TTTGAATAAATTCATCTTttcacaaaatttgttttttattcccGTCATGC
CTTGCACTAACATTTCCATCTCTTTATGTTTGGCTTCCACGTGTAATAGT
TCTGTTTCCATTTCCTTGTACTCGGCTTTGTATCTTTCGTTAGCTTGAAT
CTGTTCCAACGAAGGCTTCAGTTGAATCTCAACTAGAAAAAGAAACAAAG
CGAAATTGGACCATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000894XLOC_000894Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001708-proteinTCONS_00001708-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001708-exon-sc0000011-1491911889:89318..89688TCONS_00001708-exon-sc0000011-1491911889:89318..89688Clytia hemisphaericaexon
TCONS_00001708-exon-sc0000011-1510915933:89318..89688TCONS_00001708-exon-sc0000011-1510915933:89318..89688Clytia hemisphaericaexon
TCONS_00001708-exon-sc0000011-1575043694:89318..89688TCONS_00001708-exon-sc0000011-1575043694:89318..89688Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:89318..89688 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.875994	0.854232	0.247961	0.242591	0.590663	0.233375	1.68934	0.790771	0.922729	2.05731	0.221875	0.437555	8.73894	5.14277	8.58046	9.47505	1.15081	2.19058	10.0104	9.50073	1.48218	0.309838	0.753298	0	3.2918	1.46893	0.30029	3.52526	0.243071	0.742953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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