TCONS_00001704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001704
Unique NameTCONS_00001704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length972

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001704 ID=TCONS_00001704|Name=TCONS_00001704|organism=Clytia hemisphaerica|type=transcript|length=972bp
gattgattttcgaAAGTCTCTTAATTTAAAGATACAAATCAACGGGTTTA
CAAGGCTGTTCAATATAAAGCCAAAAAGTCGGATGTTATCTGTGACAAAT
CCAAAAAAGCATTCATGTCGGTATACAAATGCAAATAAATCGAATGCTAT
CAGACCAGGTATCAAAAATAAGAGCACAACAGCCAGAATGATGTTGAAAA
CGCCAACcacatttttttcagtttttattcGAAGGCCAATTGCCTCTTGA
GAATTTGTTAAGGATGCACtgagtttttctttgaattcgTTATTTTGTGC
CCGTAGCGCATATTTTACACGGATGTACACGAACACCATGAGCAACGCAT
GCCCCACGGTTATAACATTCGAATGGATAATAACAGCGTAAGGAATATGA
TCGATAAATTTCATCGGAGCTGCtgctaaaatagccaaaatccaaattgt
CATCGAATATTTGACGCACCGTTGCCAGCTCATGTTTACACGGTACTTGA
TAGGATTTATGATGGCTTTGTAGCGATCGTAAGATAAAGCACCGACGCTA
AATATTGCAGCTAGAATAATAATATCGGGTGCTACCAAGTCCATCCAAAA
GACAACgacatttttctctttatacCCTGCATAAGCGGTTATAGGAGCCA
CAACACTCGCCACAAGAAAGTCACAAAAACATAGATTGAATATCAAATAA
TTAAAGGGCGTACGCAATTTCTTCAACGGGTCTTTCAGTACAGTGATCAT
GACTGTCCCATTTAATACCGCAGCTAAAAATCCAATAACACTGTTTACGA
TGCAAGTAGCTAATGCAAATTCAAAACCACCATTGAATTTTGTACAATCC
ATATTCCCAAAAAAGATTTGTTGTGACAGTTATACCAATAGCTTTTTCTA
GTATTTGCTCTTTCTAGTATTTGAGTTATTTATGTTATATATGATAGCTG
GCTACTTTACAAAGAGCAAGTT
Run BLAST on NCBI

protein sequence of TCONS_00001704-protein

>TCONS_00001704-protein ID=TCONS_00001704-protein|Name=TCONS_00001704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MDCTKFNGGFEFALATCIVNSVIGFLAAVLNGTVMITVLKDPLKKLRTPF
NYLIFNLCFCDFLVASVVAPITAYAGYKEKNVVVFWMDLVAPDIIILAAI
FSVGALSYDRYKAIINPIKYRVNMSWQRCVKYSMTIWILAILAAAPMKFI
DHIPYAVIIHSNVITVGHALLMVFVYIRVKYALRAQNNEFKEKLSASLTN
SQEAIGLRIKTEKNVVGVFNIILAVVLLFLIPGLIAFDLFAFVYRHECFF
GFVTDNIRLFGFILNSLVNPLICIFKLRDFRKSI
Run BLAST on NCBI

transcript from alignment at sc0000011:61635..62606

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001704 ID=TCONS_00001704|Name=TCONS_00001704|organism=Clytia hemisphaerica|type=transcript|length=972bp|location=Sequence derived from alignment at sc0000011:61635..62606 (Clytia hemisphaerica)
AACTTGCTCTTTGTAAAGTAGCCAGCTATCATATATAACATAAATAACTC AAATACTAGAAAGAGCAAATACTAGAAAAAGCTATTGGTATAACTGTCAC AACAAATCTTTTTTGGGAATATGGATTGTACAAAATTCAATGGTGGTTTT GAATTTGCATTAGCTACTTGCATCGTAAACAGTGTTATTGGATTTTTAGC TGCGGTATTAAATGGGACAGTCATGATCACTGTACTGAAAGACCCGTTGA AGAAATTGCGTACGCCCTTTAATTATTTGATATTCAATCTATGTTTTTGT GACTTTCTTGTGGCGAGTGTTGTGGCTCCTATAACCGCTTATGCAGGgta taaagagaaaaatgtcGTTGTCTTTTGGATGGACTTGGTAGCACCCGATA TTATTATTCTAGCTGCAATATTTAGCGTCGGTGCTTTATCTTACGATCGC TACAAAGCCATCATAAATCCTATCAAGTACCGTGTAAACATGAGCTGGCA ACGGTGCGTCAAATATTCGATGacaatttggattttggctattttagcaG CAGCTCCGATGAAATTTATCGATCATATTCCTTACGCTGTTATTATCCAT TCGAATGTTATAACCGTGGGGCATGCGTTGCTCATGGTGTTCGTGTACAT CCGTGTAAAATATGCGCTACGGGCACAAAATAAcgaattcaaagaaaaac tcaGTGCATCCTTAACAAATTCTCAAGAGGCAATTGGCCTTCgaataaaa actgaaaaaaatgtgGTTGGCGTTTTCAACATCATTCTGGCTGTTGTGCT CTTATTTTTGATACCTGGTCTGATAGCATTCGATTTATTTGCATTTGTAT ACCGACATGAATGCTTTTTTGGATTTGTCACAGATAACATCCGACTTTTT GGCTTTATATTGAACAGCCTTGTAAACCCGTTGATTTGTATCTTTAAATT AAGAGACTTtcgaaaatcaatc

Coding sequence (CDS) from alignment at sc0000011:61635..62606

>TCONS_00001704 ID=TCONS_00001704|Name=TCONS_00001704|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000011:61635..62606 (Clytia hemisphaerica)
ATGGATTGTACAAAATTCAATGGTGGTTTTGAATTTGCATTAGCTACTTG
CATCGTAAACAGTGTTATTGGATTTTTAGCTGCGGTATTAAATGGGACAG
TCATGATCACTGTACTGAAAGACCCGTTGAAGAAATTGCGTACGCCCTTT
AATTATTTGATATTCAATCTATGTTTTTGTGACTTTCTTGTGGCGAGTGT
TGTGGCTCCTATAACCGCTTATGCAGGgtataaagagaaaaatgtcGTTG
TCTTTTGGATGGACTTGGTAGCACCCGATATTATTATTCTAGCTGCAATA
TTTAGCGTCGGTGCTTTATCTTACGATCGCTACAAAGCCATCATAAATCC
TATCAAGTACCGTGTAAACATGAGCTGGCAACGGTGCGTCAAATATTCGA
TGacaatttggattttggctattttagcaGCAGCTCCGATGAAATTTATC
GATCATATTCCTTACGCTGTTATTATCCATTCGAATGTTATAACCGTGGG
GCATGCGTTGCTCATGGTGTTCGTGTACATCCGTGTAAAATATGCGCTAC
GGGCACAAAATAAcgaattcaaagaaaaactcaGTGCATCCTTAACAAAT
TCTCAAGAGGCAATTGGCCTTCgaataaaaactgaaaaaaatgtgGTTGG
CGTTTTCAACATCATTCTGGCTGTTGTGCTCTTATTTTTGATACCTGGTC
TGATAGCATTCGATTTATTTGCATTTGTATACCGACATGAATGCTTTTTT
GGATTTGTCACAGATAACATCCGACTTTTTGGCTTTATATTGAACAGCCT
TGTAAACCCGTTGATTTGTATCTTTAAATTAAGAGACTTtcgaaaatcaa
tc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000891XLOC_000891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001704-exon-sc0000011-1491911889:61635..62606TCONS_00001704-exon-sc0000011-1491911889:61635..62606Clytia hemisphaericaexon
TCONS_00001704-exon-sc0000011-1510915933:61635..62606TCONS_00001704-exon-sc0000011-1510915933:61635..62606Clytia hemisphaericaexon
TCONS_00001704-exon-sc0000011-1575043694:61635..62606TCONS_00001704-exon-sc0000011-1575043694:61635..62606Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001704-proteinTCONS_00001704-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:61635..62606 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0627047 0 0.298901 0.559654 0.156731 0.0970682 0 0 0.896801 0.513841 2.58749 3.25845 0.453773 0.572435 1.08742 0.465506 0.26974 0.197354 0.106627 0 0.0499225 0 0.0637576 0.136088 0 0.0525812
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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