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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001704 ID=TCONS_00001704|Name=TCONS_00001704|organism=Clytia hemisphaerica|type=transcript|length=972bp
gattgattttcgaAAGTCTCTTAATTTAAAGATACAAATCAACGGGTTTA
CAAGGCTGTTCAATATAAAGCCAAAAAGTCGGATGTTATCTGTGACAAAT
CCAAAAAAGCATTCATGTCGGTATACAAATGCAAATAAATCGAATGCTAT
CAGACCAGGTATCAAAAATAAGAGCACAACAGCCAGAATGATGTTGAAAA
CGCCAACcacatttttttcagtttttattcGAAGGCCAATTGCCTCTTGA
GAATTTGTTAAGGATGCACtgagtttttctttgaattcgTTATTTTGTGC
CCGTAGCGCATATTTTACACGGATGTACACGAACACCATGAGCAACGCAT
GCCCCACGGTTATAACATTCGAATGGATAATAACAGCGTAAGGAATATGA
TCGATAAATTTCATCGGAGCTGCtgctaaaatagccaaaatccaaattgt
CATCGAATATTTGACGCACCGTTGCCAGCTCATGTTTACACGGTACTTGA
TAGGATTTATGATGGCTTTGTAGCGATCGTAAGATAAAGCACCGACGCTA
AATATTGCAGCTAGAATAATAATATCGGGTGCTACCAAGTCCATCCAAAA
GACAACgacatttttctctttatacCCTGCATAAGCGGTTATAGGAGCCA
CAACACTCGCCACAAGAAAGTCACAAAAACATAGATTGAATATCAAATAA
TTAAAGGGCGTACGCAATTTCTTCAACGGGTCTTTCAGTACAGTGATCAT
GACTGTCCCATTTAATACCGCAGCTAAAAATCCAATAACACTGTTTACGA
TGCAAGTAGCTAATGCAAATTCAAAACCACCATTGAATTTTGTACAATCC
ATATTCCCAAAAAAGATTTGTTGTGACAGTTATACCAATAGCTTTTTCTA
GTATTTGCTCTTTCTAGTATTTGAGTTATTTATGTTATATATGATAGCTG
GCTACTTTACAAAGAGCAAGTT Run BLAST on NCBI protein sequence of TCONS_00001704-protein >TCONS_00001704-protein ID=TCONS_00001704-protein|Name=TCONS_00001704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MDCTKFNGGFEFALATCIVNSVIGFLAAVLNGTVMITVLKDPLKKLRTPF
NYLIFNLCFCDFLVASVVAPITAYAGYKEKNVVVFWMDLVAPDIIILAAI
FSVGALSYDRYKAIINPIKYRVNMSWQRCVKYSMTIWILAILAAAPMKFI
DHIPYAVIIHSNVITVGHALLMVFVYIRVKYALRAQNNEFKEKLSASLTN
SQEAIGLRIKTEKNVVGVFNIILAVVLLFLIPGLIAFDLFAFVYRHECFF
GFVTDNIRLFGFILNSLVNPLICIFKLRDFRKSI Run BLAST on NCBI transcript from alignment at sc0000011:61635..62606 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001704 ID=TCONS_00001704|Name=TCONS_00001704|organism=Clytia hemisphaerica|type=transcript|length=972bp|location=Sequence derived from alignment at sc0000011:61635..62606 (Clytia hemisphaerica)
AACTTGCTCTTTGTAAAGTAGCCAGCTATCATATATAACATAAATAACTC
AAATACTAGAAAGAGCAAATACTAGAAAAAGCTATTGGTATAACTGTCAC
AACAAATCTTTTTTGGGAATATGGATTGTACAAAATTCAATGGTGGTTTT
GAATTTGCATTAGCTACTTGCATCGTAAACAGTGTTATTGGATTTTTAGC
TGCGGTATTAAATGGGACAGTCATGATCACTGTACTGAAAGACCCGTTGA
AGAAATTGCGTACGCCCTTTAATTATTTGATATTCAATCTATGTTTTTGT
GACTTTCTTGTGGCGAGTGTTGTGGCTCCTATAACCGCTTATGCAGGgta
taaagagaaaaatgtcGTTGTCTTTTGGATGGACTTGGTAGCACCCGATA
TTATTATTCTAGCTGCAATATTTAGCGTCGGTGCTTTATCTTACGATCGC
TACAAAGCCATCATAAATCCTATCAAGTACCGTGTAAACATGAGCTGGCA
ACGGTGCGTCAAATATTCGATGacaatttggattttggctattttagcaG
CAGCTCCGATGAAATTTATCGATCATATTCCTTACGCTGTTATTATCCAT
TCGAATGTTATAACCGTGGGGCATGCGTTGCTCATGGTGTTCGTGTACAT
CCGTGTAAAATATGCGCTACGGGCACAAAATAAcgaattcaaagaaaaac
tcaGTGCATCCTTAACAAATTCTCAAGAGGCAATTGGCCTTCgaataaaa
actgaaaaaaatgtgGTTGGCGTTTTCAACATCATTCTGGCTGTTGTGCT
CTTATTTTTGATACCTGGTCTGATAGCATTCGATTTATTTGCATTTGTAT
ACCGACATGAATGCTTTTTTGGATTTGTCACAGATAACATCCGACTTTTT
GGCTTTATATTGAACAGCCTTGTAAACCCGTTGATTTGTATCTTTAAATT
AAGAGACTTtcgaaaatcaatc Coding sequence (CDS) from alignment at sc0000011:61635..62606 >TCONS_00001704 ID=TCONS_00001704|Name=TCONS_00001704|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000011:61635..62606 (Clytia hemisphaerica)
ATGGATTGTACAAAATTCAATGGTGGTTTTGAATTTGCATTAGCTACTTG
CATCGTAAACAGTGTTATTGGATTTTTAGCTGCGGTATTAAATGGGACAG
TCATGATCACTGTACTGAAAGACCCGTTGAAGAAATTGCGTACGCCCTTT
AATTATTTGATATTCAATCTATGTTTTTGTGACTTTCTTGTGGCGAGTGT
TGTGGCTCCTATAACCGCTTATGCAGGgtataaagagaaaaatgtcGTTG
TCTTTTGGATGGACTTGGTAGCACCCGATATTATTATTCTAGCTGCAATA
TTTAGCGTCGGTGCTTTATCTTACGATCGCTACAAAGCCATCATAAATCC
TATCAAGTACCGTGTAAACATGAGCTGGCAACGGTGCGTCAAATATTCGA
TGacaatttggattttggctattttagcaGCAGCTCCGATGAAATTTATC
GATCATATTCCTTACGCTGTTATTATCCATTCGAATGTTATAACCGTGGG
GCATGCGTTGCTCATGGTGTTCGTGTACATCCGTGTAAAATATGCGCTAC
GGGCACAAAATAAcgaattcaaagaaaaactcaGTGCATCCTTAACAAAT
TCTCAAGAGGCAATTGGCCTTCgaataaaaactgaaaaaaatgtgGTTGG
CGTTTTCAACATCATTCTGGCTGTTGTGCTCTTATTTTTGATACCTGGTC
TGATAGCATTCGATTTATTTGCATTTGTATACCGACATGAATGCTTTTTT
GGATTTGTCACAGATAACATCCGACTTTTTGGCTTTATATTGAACAGCCT
TGTAAACCCGTTGATTTGTATCTTTAAATTAAGAGACTTtcgaaaatcaa
tc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001704-exon-sc0000011-1491911889:61635..62606 | TCONS_00001704-exon-sc0000011-1491911889:61635..62606 | Clytia hemisphaerica | exon |
| TCONS_00001704-exon-sc0000011-1510915933:61635..62606 | TCONS_00001704-exon-sc0000011-1510915933:61635..62606 | Clytia hemisphaerica | exon |
| TCONS_00001704-exon-sc0000011-1575043694:61635..62606 | TCONS_00001704-exon-sc0000011-1575043694:61635..62606 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:61635..62606 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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