|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001701 ID=TCONS_00001701|Name=TCONS_00001701|organism=Clytia hemisphaerica|type=transcript|length=1258bp
CAAAAATCATAGATAATCACCACAAAACTAATCATTGTATATCACAGAAT
GCAGTACCAAATTCAAGCAATTAAGTAAAACTTTACATTTCCTTCTTTCT
TGGTAATAGAAGTGAACGTTTGAACTTGAAAATATGGTGCACTTGAGAAA
TATTATATTTGTAATTATCAATTGTGCAGTTGCAGCATTTTTTGCTGTCT
CTTGTGGAGGGGTTGGgtggtattttatgaaagttaaaaaaaatggccAG
ACAGGAGAGGCTTCGATCGGTTTGTGGAAAAGTTGTGTGTCAGTTGCATC
AGTCAAAGTATGTTTTGACTTGCCTGAAGAAGCTTTAAGTGACAGCATGG
AGGCGATCCGTGGATGTAGCGTAATTGCTACAGGAATCAGTATTGTTGTT
CTTTTGTTTGCATGTACTGCCACCGCCGTGAGTGAAAGAAAGGTCAAATA
TGCTGGCTATGGAATGCTACTAGCTTGTACTTTAAGTGTTGCTGCTGGTG
TCCTCTTTTTTAAAGAACGTATGGAAATAAACTTAAGCGATTCTGATCTT
GATTTTGATGATCTCCACTATGGCTGGGCGTATATTTTGAATTGGATCGG
AGCTGGTAGTGCACTTGTATCAGTTTTCTTTGCGTGTTATCTTTCAGCTG
CTGATGAAGATTACGATTTAGAACGTACAATTTCGAATACCATTACAAAT
TATGACAGATTAAACACTGCATAGTGTGTCCGGTAAAAAGGAACGTGTCA
GACCCATTGATTTCAAAAGCCTCGAAAGGGCTAGATCCAAAACCCCAGGA
TAGGAAATTCAGCCAATTGTTTCTCATCCAGAACCCGTTGACtcaagtgt
ttttcaaacaaaatttctaaatttgggaCAAACTTACAAGACaaggcttt
actttttcttgctagataaaggttgaagattcttgTCTAGTCCATTTGGA
CGCCTCtacatcataaaaaagttttattgatgAAAGTCTAGAGAAGAAAA
GTCTGGTTTCAAGTCCAAGTGAGGGGCAGTGGTTTTACAAACTGACGGTA
CGCGCGGAGAAAGAATTGACTTTCAGAATCGCACCCTTAACAGTACAGCT
AAAAATTCATTACACTTGCaatgtattttttcaaattttagagaTCTTTT
AAAGAGCAAAAAAGTCAGATTTTCGGGTAAAGTGCATTTTTGctacacac
ttttttttgtaaaagaacactattcttataaaaaagcgtgtattttggAA
AACCCCCT Run BLAST on NCBI protein sequence of TCONS_00001701-protein >TCONS_00001701-protein ID=TCONS_00001701-protein|Name=TCONS_00001701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MVHLRNIIFVIINCAVAAFFAVSCGGVGWYFMKVKKNGQTGEASIGLWKS
CVSVASVKVCFDLPEEALSDSMEAIRGCSVIATGISIVVLLFACTATAVS
ERKVKYAGYGMLLACTLSVAAGVLFFKERMEINLSDSDLDFDDLHYGWAY
ILNWIGAGSALVSVFFACYLSAADEDYDLERTISNTITNYDRLNTA Run BLAST on NCBI transcript from alignment at sc0000011:1172068..1173804- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001701 ID=TCONS_00001701|Name=TCONS_00001701|organism=Clytia hemisphaerica|type=transcript|length=1737bp|location=Sequence derived from alignment at sc0000011:1172068..1173804- (Clytia hemisphaerica)
CAAAAATCATAGATAATCACCACAAAACTAATCATTGTATATCACAGAAT
GCAGTACCAAATTCAAGCAATTAAGTAAAACTTTACATTTCCTTCTTTCT
TGGTAATAGAAGTGAACGTTTGAACTTGAAAATATGGTGCACTTGAGAAA
TATTATATTTGTAATTATCAATTGTGCAGTTGCAGCATTTTTTGCTGTCT
CTTGTGGAGGGGTTGGGTGGTATTTTATGAAAGTTAAAAAAAATGGCCAG
ACAGGAGAGGGTGAGTTGAATACCACGATTTCAATTTAATTCAAAATATA
TTGCAGGAAGTTCTACAAGTTTAAAATTCAGATTTCTACATTGACTACAG
TATTTTATTATAGTTTCGAGGGGCCCCTTTCGAACCATTGAATAAAGATA
GTATTTAGGAATAAAACGAAAATTCCAGACACTTAAAAAATCTATTAAAT
TAGATAATAAGGAATCCCTAACCTCCCCCAGAAATTTGCCAACGGAAGTT
TTCCCCAGAAATTTGCCACCTGGAAATTTGACACCGGAACTTTTCCCCAA
GGAATGCAGGTATATGTTGGATCTCAATGCTGGTTAAAATTTGTGGCAGG
CAATTTTCCTGTCACTATCAAAATATGGTTAGATCATGTGTGAAAAACTT
ACGAAGCCCTAAAAATAACCGAGTGATAGAGATATCAGAAGAAACTTTTT
GTCCAATAAAATTTTTCTTTTCCTTTCACAATCTTACAGCTTCGATCGGT
TTGTGGAAAAGTTGTGTGTCAGTTGCATCAGTCAAAGTATGTTTTGACTT
GCCTGAAGAAGCTTTAAGTGACAGCATGGAGGCGATCCGTGGATGTAGCG
TAATTGCTACAGGAATCAGTATTGTTGTTCTTTTGTTTGCATGTACTGCC
ACCGCCGTGAGTGAAAGAAAGGTCAAATATGCTGGCTATGGAATGCTACT
AGCTTGTACTTTAAGTGTTGCTGCTGGTGTCCTCTTTTTTAAAGAACGTA
TGGAAATAAACTTAAGCGATTCTGATCTTGATTTTGATGATCTCCACTAT
GGCTGGGCGTATATTTTGAATTGGATCGGAGCTGGTAGTGCACTTGTATC
AGTTTTCTTTGCGTGTTATCTTTCAGCTGCTGATGAAGATTACGATTTAG
AACGTACAATTTCGAATACCATTACAAATTATGACAGATTAAACACTGCA
TAGTGTGTCCGGTAAAAAGGAACGTGTCAGACCCATTGATTTCAAAAGCC
TCGAAAGGGCTAGATCCAAAACCCCAGGATAGGAAATTCAGCCAATTGTT
TCTCATCCAGAACCCGTTGACTCAAGTGTTTTTCAAACAAAATTTCTAAA
TTTGGGACAAACTTACAAGACAAGGCTTTACTTTTTCTTGCTAGATAAAG
GTTGAAGATTCTTGTCTAGTCCATTTGGACGCCTCTACATCATAAAAAAG
TTTTATTGATGAAAGTCTAGAGAAGAAAAGTCTGGTTTCAAGTCCAAGTG
AGGGGCAGTGGTTTTACAAACTGACGGTACGCGCGGAGAAAGAATTGACT
TTCAGAATCGCACCCTTAACAGTACAGCTAAAAATTCATTACACTTGCAA
TGTATTTTTTCAAATTTTAGAGATCTTTTAAAGAGCAAAAAAGTCAGATT
TTCGGGTAAAGTGCATTTTTGCTACACACTTTTTTTTGTAAAAGAACACT
ATTCTTATAAAAAAGCGTGTATTTTGGAAAACCCCCT Coding sequence (CDS) from alignment at sc0000011:1172068..1173804- >TCONS_00001701 ID=TCONS_00001701|Name=TCONS_00001701|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000011:1172068..1173804- (Clytia hemisphaerica)
CTTCGATCGGTTTGTGGAAAAGTTGTGTGTCAGTTGCATCAGTCAAAGTA
TGTTTTGACTTGCCTGAAGAAGCTTTAAGTGACAGCATGGAGGCGATCCG
TGGATGTAGCGTAATTGCTACAGGAATCAGTATTGTTGTTCTTTTGTTTG
CATGTACTGCCACCGCCGTGAGTGAAAGAAAGGTCAAATATGCTGGCTAT
GGAATGCTACTAGCTTGTACTTTAAGTGTTGCTGCTGGTGTCCTCTTTTT
TAAAGAACGTATGGAAATAAACTTAAGCGATTCTGATCTTGATTTTGATG
ATCTCCACTATGGCTGGGCGTATATTTTGAATTGGATCGGAGCTGGTAGT
GCACTTGTATCAGTTTTCTTTGCGTGTTATCTTTCAGCTGCTGATGAAGA
TTACGATTTAGAACGTACAATTTCGAATACCATTACAAATTATGACAGAT
TAAACACTGCATAGATGGTGCACTTGAGAAATATTATATTTGTAATTATC
AATTGTGCAGTTGCAGCATTTTTTGCTGTCTCTTGTGGAGGGGTTGGGTG
GTATTTTATGAAAGTTAAAAAAAATGGCCAGACAGGAGAGGCTTCGATCG
GTTTGTGGAAAAGTTGTGTGTCAGTTGCATCAGTCAAAGTATGTTTTGAC
TTGCCTGAAGAAGCTTTAAGTGACAGCATGGAGGCGATCCGTGGATGTAG
CGTAATTGCTACAGGAATCAGTATTGTTGTTCTTTTGTTTGCATGTACTG
CCACCGCCGTGAGTGAAAGAAAGGTCAAATATGCTGGCTATGGAATGCTA
CTAGCTTGTACTTTAAGTGTTGCTGCTGGTGTCCTCTTTTTTAAAGAACG
TATGGAAATAAACTTAAGCGATTCTGATCTTGATTTTGATGATCTCCACT
ATGGCTGGGCGTATATTTTGAATTGGATCGGAGCTGGTAGTGCACTTGTA
TCAGTTTTCTTTGCGTGTTATCTTTCAGCTGCTGATGAAGATTACGATTT
AGAACGTACAATTTCGAATACCATTACAAATTATGACAGATTAAACACTG
CATAGATGGTGCACTTGAGAAATATTATATTTGTAATTATCAATTGTGCA
GTTGCAGCATTTTTTGCTGTCTCTTGTGGAGGGGTTGGGTGGTATTTTAT
GAAAGTTAAAAAAAATGGCCAGACAGGAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001701-exon-sc0000011-1575043694:1173545..1173804 | TCONS_00001701-exon-sc0000011-1575043694:1173545..1173804 | Clytia hemisphaerica | exon |
| TCONS_00001701-exon-sc0000011-1575043694:1172068..1173065 | TCONS_00001701-exon-sc0000011-1575043694:1172068..1173065 | Clytia hemisphaerica | exon |
| TCONS_00001701-exon-sc0000011-1510915933:1173545..1173804 | TCONS_00001701-exon-sc0000011-1510915933:1173545..1173804 | Clytia hemisphaerica | exon |
| TCONS_00001701-exon-sc0000011-1510915933:1172068..1173065 | TCONS_00001701-exon-sc0000011-1510915933:1172068..1173065 | Clytia hemisphaerica | exon |
| TCONS_00001701-exon-sc0000011-1491911889:1173545..1173804 | TCONS_00001701-exon-sc0000011-1491911889:1173545..1173804 | Clytia hemisphaerica | exon |
| TCONS_00001701-exon-sc0000011-1491911889:1172068..1173065 | TCONS_00001701-exon-sc0000011-1491911889:1172068..1173065 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:1172068..1173804 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
