TCONS_00001699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001699
Unique NameTCONS_00001699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001699 ID=TCONS_00001699|Name=TCONS_00001699|organism=Clytia hemisphaerica|type=transcript|length=1792bp
agtaagtgaaaaatttgaatcaaaaaatttcggtcgccaactgggcaggg
tactctacACTTACCATACCTGTCATCAACTTCAAACTCCTCCGTGAGAA
ATTAGGAATTCTTGATAAGAGTATTGACATTTTGGAGCATGTAGAAAATG
CAACTACAAAGGAAGAAAAGCAAAGACGTAAACAAGTTGTAGAAGACTTC
GAAGATGAGGGTGATAGACTTTTGAAATTGCAaccaaatttgctcaagtt
attttactttttgaagaaaaataaccTCAAAAGAGCACTATTGACGAGAA
ATAAACAAAGTGCTGTTGATACTTTTGTACATAAATTCATCCAAAATGAT
GAGAGAAATTTGTTcaataatgaaaatgaaatattcttGAATaCATTGAC
GAGAGATTTTAAACCAGTTAAACCTCACCCAGCTCCTATACAACACATTT
GTAAACAATGGGGAGTTCCCTGTGAAAATGTATTGATGGTTGGTGATGAT
GTTCAAGACATTCAATCAGGAAATGCTGCCGGAGCTGTGACTGTGCGAAA
GGTCAAAGCAGATACGCAAAATGTTAAATGGAATGAAGATATCGCAATAA
ATGATCTGAGTGAACTTATCGATTTGTTAGACAAATCTTTTGATGTAAGA
AAGAATGACGAAGATTGAATTTAAATGATATTTAGATTTCGATGTTAACC
CATTAGCTTATTAAAAATAACCATAAACTACCTTGAAACATTTATAACAT
CATTgtttgtaaaaacatgaaactaccagtattgaaaaaataattttcat
tactttaacTACGATATCATCATTGTACAATCCTTCTTTGTAGTCCTAAC
TAAAGTAAAAGACCTAGTATAAGTATAATTCAATTTCGGGGATcattaaa
atcgaaaaatagcgaaaatatCTGGCCGCaaaatttctgacattaaaGAT
ATATGATAAGGATTTGAATGTCTATGTGGTTGGAAAATCGGATCCGGAAA
ATCTTGTTTTAGGAAggtatttttttagatttatacatcgagaaaattca
aaaaaaattttgtatcGTAAATAGTCTcgttattgtatttttttttaata
aagtgtATATTTTGCTAAAAATATTCGATACAAAAATATCATTACAAAAT
ACCTAGGTTTATATAATGgttaattaaattttaaaattggttcTTGCTTG
CAGCCTTGCTTGCAACAACATCACAATTAAAAATATCTACTTTCTTgctt
aaaaattgaattatgaAATTCAATTTAGCCCTGACAATGGGTCAGAGTCC
CTGTTTTTGGAGAGTGTACCCACCATTATGAATATCTAAATTATTTTGCT
AGCCGACTTGAGCATcattaaatttacaaaaaaagtcAATTTATTCGGTA
TTACAATCTGATTATACTTCCTTTCATTTTTCCAGTGAAATATCAAGTCT
TTTGGGGTGCGTTCCTGTTTCCTTAAAACACGACCAGTACATATTATATA
TCTATCATAAGTCCAAACAAGAACTAAACAACTCCATTTATTCCAATTCC
TCTGTTTAGATTATTAACAACTTTATTACACCAGAATTCAAGTGACTTCA
TTATAACTATTATCAGTGGAACACATCGCTTCAATTAGTCCTTCTAGCTC
TTCATGGTCCGATTTATCCTTGTCATGTTCAGGTATATGTCTATTATTAA
ATTTCTCGTTGAACGTTGTAATGGATTTTTGGTCAGGGAAAGCTTTGATC
AGGATATCCAGTAGTGTCTCCGCAGCCATACTCACATTTTGC
Run BLAST on NCBI

transcript from alignment at sc0000011:1088332..1090881-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001699 ID=TCONS_00001699|Name=TCONS_00001699|organism=Clytia hemisphaerica|type=transcript|length=2550bp|location=Sequence derived from alignment at sc0000011:1088332..1090881- (Clytia hemisphaerica)
AGTAAGTGAAAAATTTGAATCAAAAAATTTCGGTCGCCAACTGGGCAGGG
TACTCTACACTTACCATACCTGTCATCAACTTCAAACTCCTCCGTGAGAA
ATTAGGAATTCTTGATAAGAGTATTGACATTTTGGAGCATGTAGAAAATG
CAACTACAAAGGAAGAAAAGCAAAGACGTAAACAAGTTGTAGAAGACTTC
GAAGATGAGGGTGATAGACTTTTGAAATTGCAACCAAATTTGCTCAAGTT
ATTTTACTTTTTGAAGAAAAATAACCTCAAAAGAGCACTATTGACGAGAA
ATAAACAAAGTGCTGTTGATACTTTTGTACATAAATTCATCCAAAATGAT
GAGAGAAATTTGTTCAATAATGAAAATGAAATATTCTTGAATGTAAGTAA
CTGTTTATTGAATTATAATAATAAATTACATTACTTGCTGCTAACCTTTG
CTAAATGGTTAAATGTTTTACCAAAATGTTAGTTTTAATGCTTTTAAGTA
TACAGAGTGTGTGAATTGTTTTTTTTATGTTAGGGCCATTACTTATTTAA
ATGACTTCGCCATATGATAAACATCTTTATGCAATATATATTTTTTATTT
ACAGACATTGACGAGAGATTTTAAACCAGTTAAACCTCACCCAGCTCCTA
TACAACACATTTGTAAACAATGGGGAGTTCCCTGTGAAAATGTATTGATG
GTTGGTGATGATGTTCAAGACATTCAATCAGGAAATGCTGCCGGAGCTGG
TAATTAAAAGTTGCGTGCCTTAAGGGAACTAATTTTCGCTTTTTTCGCTA
TTTTACGGCAAAACCGCGAAAATTAGAACCCACGAAATACAAATTTAGCC
ATTTTTCATAAAAGAATTTATGAAAAATCTCTAGGAAAAGAAATGTGTCC
AAAATATATCAAAACGGCGAAAATTAGTTCCCGCGAAATGCGACTTTTTT
CAAAAGTTTTTTCGTCCGCGAAAAGTAGTTCCCGCTGTTTGTGAGTTTTT
TTTTCACGTAGATCCCTATCCTTTTCTGTAACTTTTATCAGTCTGGTAAG
TACTTGAGGGAAATGGATATCTCTTGAACATATTCATTACTCAGGTAGAA
AACTTTAGCCAACACTCATGCATTTACCATGGATAGGTTTAATGTCTACT
AGTATATTGTCTAATCTCTTAGGATTATTGCGTCTTAGTAGTTTTTTAAT
GTGTTTTACATGTGGTTCATAAAACGAAAATATGATTTCTCTCTTGTAGG
AAAGGATTTGTTTTAGTTGAATATTCGTTCTCGTTCTCGTTTTAGTGACT
GTGCGAAAGGTCAAAGCAGATACGCAAAATGTTAAATGGAATGAAGATAT
CGCAATAAATGATCTGAGTGAACTTATCGATTTGTTAGACAAATCTTTTG
ATGTAAGAAAGAATGACGAAGATTGAATTTAAATGATATTTAGATTTCGA
TGTTAACCCATTAGCTTATTAAAAATAACCATAAACTACCTTGAAACATT
TATAACATCATTGTTTGTAAAAACATGAAACTACCAGTATTGAAAAAATA
ATTTTCATTACTTTAACTACGATATCATCATTGTACAATCCTTCTTTGTA
GTCCTAACTAAAGTAAAAGACCTAGTATAAGTATAATTCAATTTCGGGGA
TCATTAAAATCGAAAAATAGCGAAAATATCTGGCCGCAAAATTTCTGACA
TTAAAGATATATGATAAGGATTTGAATGTCTATGTGGTTGGAAAATCGGA
TCCGGAAAATCTTGTTTTAGGAAGGTATTTTTTTAGATTTATACATCGAG
AAAATTCAAAAAAAATTTTGTATCGTAAATAGTCTCGTTATTGTATTTTT
TTTTAATAAAGTGTATATTTTGCTAAAAATATTCGATACAAAAATATCAT
TACAAAATACCTAGGTTTATATAATGGTTAATTAAATTTTAAAATTGGTT
CTTGCTTGCAGCCTTGCTTGCAACAACATCACAATTAAAAATATCTACTT
TCTTGCTTAAAAATTGAATTATGAAATTCAATTTAGCCCTGACAATGGGT
CAGAGTCCCTGTTTTTGGAGAGTGTACCCACCATTATGAATATCTAAATT
ATTTTGCTAGCCGACTTGAGCATCATTAAATTTACAAAAAAAGTCAATTT
ATTCGGTATTACAATCTGATTATACTTCCTTTCATTTTTCCAGTGAAATA
TCAAGTCTTTTGGGGTGCGTTCCTGTTTCCTTAAAACACGACCAGTACAT
ATTATATATCTATCATAAGTCCAAACAAGAACTAAACAACTCCATTTATT
CCAATTCCTCTGTTTAGATTATTAACAACTTTATTACACCAGAATTCAAG
TGACTTCATTATAACTATTATCAGTGGAACACATCGCTTCAATTAGTCCT
TCTAGCTCTTCATGGTCCGATTTATCCTTGTCATGTTCAGGTATATGTCT
ATTATTAAATTTCTCGTTGAACGTTGTAATGGATTTTTGGTCAGGGAAAG
CTTTGATCAGGATATCCAGTAGTGTCTCCGCAGCCATACTCACATTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000886XLOC_000886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001699-exon-sc0000011-1575043694:1090490..1090881TCONS_00001699-exon-sc0000011-1575043694:1090490..1090881Clytia hemisphaericaexon
TCONS_00001699-exon-sc0000011-1575043694:1090133..1090277TCONS_00001699-exon-sc0000011-1575043694:1090133..1090277Clytia hemisphaericaexon
TCONS_00001699-exon-sc0000011-1575043694:1088332..1089586TCONS_00001699-exon-sc0000011-1575043694:1088332..1089586Clytia hemisphaericaexon
TCONS_00001699-exon-sc0000011-1510915933:1090490..1090881TCONS_00001699-exon-sc0000011-1510915933:1090490..1090881Clytia hemisphaericaexon
TCONS_00001699-exon-sc0000011-1510915933:1090133..1090277TCONS_00001699-exon-sc0000011-1510915933:1090133..1090277Clytia hemisphaericaexon
TCONS_00001699-exon-sc0000011-1510915933:1088332..1089586TCONS_00001699-exon-sc0000011-1510915933:1088332..1089586Clytia hemisphaericaexon
TCONS_00001699-exon-sc0000011-1491911889:1090490..1090881TCONS_00001699-exon-sc0000011-1491911889:1090490..1090881Clytia hemisphaericaexon
TCONS_00001699-exon-sc0000011-1491911889:1090133..1090277TCONS_00001699-exon-sc0000011-1491911889:1090133..1090277Clytia hemisphaericaexon
TCONS_00001699-exon-sc0000011-1491911889:1088332..1089586TCONS_00001699-exon-sc0000011-1491911889:1088332..1089586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:1088332..1090881 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.760758	0.823969	1.28715	1.26062	0.930686	0.429147	1.55533	1.58835	2.57615	1.7101	1.3386	1.73999	1.92349	1.61712	2.49398	2.47062	4.73944	4.40653	1.16704	1.14101	3.43438	3.38607	3.37879	3.32274	2.45829	2.52156	1.50037	1.14852	1.14023	1.21644
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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