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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001680 ID=TCONS_00001680|Name=TCONS_00001680|organism=Clytia hemisphaerica|type=transcript|length=3298bpRun BLAST on NCBI protein sequence of TCONS_00001680-protein >TCONS_00001680-protein ID=TCONS_00001680-protein|Name=TCONS_00001680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=737bp MAFSGGDDFQLPIQNALNIARFSVDKILDTVLAQDNKIYYKVKWQDTWEPRun BLAST on NCBI transcript from alignment at sc0000011:516496..548510- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001680 ID=TCONS_00001680|Name=TCONS_00001680|organism=Clytia hemisphaerica|type=transcript|length=32015bp|location=Sequence derived from alignment at sc0000011:516496..548510- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000011:516496..548510- >TCONS_00001680 ID=TCONS_00001680|Name=TCONS_00001680|organism=Clytia hemisphaerica|type=CDS|length=8856bp|location=Sequence derived from alignment at sc0000011:516496..548510- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001680 vs. Swiss-Prot (Human)
Match: ZN184 (Zinc finger protein 184 OS=Homo sapiens GN=ZNF184 PE=1 SV=4) HSP 1 Score: 236.113 bits (601), Expect = 3.041e-65 Identity = 133/336 (39.58%), Postives = 183/336 (54.46%), Query Frame = 3
Query: 1092 TQDP-PSQTPSQRAQRQH-KPTKKHI---CNVCSKEFKTNSLLKKHSVLHGPPVHYECQTCGKTFIRKTALKRHELCHQNDRPHKCHECGKGFKESSNLAKHVIIHSGERPHACDVCNARFRQLGHLLKHVVIHKPEKPYKCTSCDKAFKRKEHLRDHMIIHTGDFPFQCEFCDKKFRFKTNLKVHVMQHSGRKDFVCHICNKAFSGKASLTQHLVCHDPTHSFSCEVCQKRFSRKAHLKRHMDVHRNEPKLVCVFCKESFPDRASYKTHLLTHTGSKPFFCSICEKRFGAKSYLQQHLLTHSNDGGTFECLECHKKFHTQEILDKHTQKHLKEKT 2084
TQ+P P +T ++R+ +Q+ P KK CN C K F S L +H H Y+C C K F R L H+ H D+P+KC +CGKGF E +L +H IH+GE+P+ CD C F Q HL++H IH EKPY C C KAF ++ H +H IHTG+ PF+C+ CDK F T+L H H+G K + C+ C KAF+G ++ +H + H + C C K FS+ ++L +H H E C C +SF +S HL HTG KP+ C+ C K F S L QH H+ + FEC EC K F L++H + H +EK
Sbjct: 195 TQEPSPEETSTKRSIKQNSNPVKKEKSCKCNECGKAFSYCSALIRHQRTHTGEKPYKCNECEKAFSRSENLINHQRIHTGDKPYKCDQCGKGFIEGPSLTQHQRIHTGEKPYKCDECGKAFSQRTHLVQHQRIHTGEKPYTCNECGKAFSQRGHFMEHQKIHTGEKPFKCDECDKTFTRSTHLTQHQKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLTQHRRIHTRE-KPFECSECGKAFSYLSNLNQHQKTHTQEKA 529 HSP 2 Score: 229.565 bits (584), Expect = 5.038e-63 Identity = 126/319 (39.50%), Postives = 168/319 (52.66%), Query Frame = 3
Query: 1125 RAQRQHKPTKKHICNVCSKEFKTNSLLKKHSVLHGPPVHYECQTCGKTFIRKTALKRHELCHQNDRPHKCHECGKGFKESSNLAKHVIIHSGERPHACDVCNARFRQLGHLLKHVVIHKPEKPYKCTSCDKAFKRKEHLRDHMIIHTGDFPFQCEFCDKKFRFKTNLKVHVMQHSGRKDFVCHICNKAFSGKASLTQHLVCHDPTHSFSCEVCQKRFSRKAHLKRHMDVHRNEPKLVCVFCKESFPDRASYKTHLLTHTGSKPFFCSICEKRFGAKSYLQQHLLTHSNDGGTFECLECHKKFHTQEILDKHTQKHLKEK 2081
R QR H K + CN C K F + L H +H Y+C CGK FI +L +H+ H ++P+KC ECGK F + ++L +H IH+GE+P+ C+ C F Q GH ++H IH EKP+KC CDK F R HL H IHTG+ ++C C K F + H M H+G K + C+ C KAFS ++LTQH H + C C K FS + L +H+ +H E C C ++F +S H HT KPF CS C K F S L QH TH+ + +EC EC K F L KH + H EK
Sbjct: 239 RHQRTHTGEKPYKCNECEKAFSRSENLINHQRIHTGDKPYKCDQCGKGFIEGPSLTQHQRIHTGEKPYKCDECGKAFSQRTHLVQHQRIHTGEKPYTCNECGKAFSQRGHFMEHQKIHTGEKPFKCDECDKTFTRSTHLTQHQKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKA-YECKECGKAFIRSSSLAKHERIHTGEK 556 HSP 3 Score: 205.297 bits (521), Expect = 8.490e-55 Identity = 113/317 (35.65%), Postives = 163/317 (51.42%), Query Frame = 3
Query: 1131 QRQHKPTKKHICNVCSKEFKTNSLLKKHSVLHGPPVHYECQTCGKTFIRKTALKRHELCHQNDRPHKCHECGKGFKESSNLAKHVIIHSGERPHACDVCNARFRQLGHLLKHVVIHKPEKPYKCTSCDKAFKRKEHLRDHMIIHTGDFPFQCEFCDKKFRFKTNLKVHVMQHSGRKDFVCHICNKAFSGKASLTQHLVCHDPTHSFSCEVCQKRFSRKAHLKRHMDVHRNEPKLVCVFCKESFPDRASYKTHLLTHTGSKPFFCSICEKRFGAKSYLQQHLLTHSNDGGTFECLECHKKFHTQEILDKHTQKHLKEK 2081
Q+ H K + CN C K F S +H ++H YEC CGK F + + L +H+ H ++P+ C ECGK F S+LA+H+ IH+GE+P+ C+ C F L +H IH EKP++C+ C KAF +L H HT + ++C+ C K F ++L H H+G K + CH C K FS +SL QH H + C C + F++ HL +H +H C C ++F +S H THT KP+ C+ CEK F S+L QH H+ + ++C EC K F L +H H EK
Sbjct: 381 QKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTGAKPYECAECGKAFRHCSSLAQHQKTHTEEKPYQCNKCEKTFSQSSHLTQHQRIHTGE-KPYKCNECDKAFSRSTHLTEHQNTHTGEK 696 HSP 4 Score: 204.527 bits (519), Expect = 1.621e-54 Identity = 112/317 (35.33%), Postives = 161/317 (50.79%), Query Frame = 3
Query: 1131 QRQHKPTKKHICNVCSKEFKTNSLLKKHSVLHGPPVHYECQTCGKTFIRKTALKRHELCHQNDRPHKCHECGKGFKESSNLAKHVIIHSGERPHACDVCNARFRQLGHLLKHVVIHKPEKPYKCTSCDKAFKRKEHLRDHMIIHTGDFPFQCEFCDKKFRFKTNLKVHVMQHSGRKDFVCHICNKAFSGKASLTQHLVCHDPTHSFSCEVCQKRFSRKAHLKRHMDVHRNEPKLVCVFCKESFPDRASYKTHLLTHTGSKPFFCSICEKRFGAKSYLQQHLLTHSNDGGTFECLECHKKFHTQEILDKHTQKHLKEK 2081
QR H K + CN C K F +H +H ++C C KTF R T L +H+ H ++ +KC+ECGK F S +H +IH+GE+P+ C+ C F Q +L +H H EKPY C C K+F L H+ IHTG+ P++C C K F + ++L H H+ K F C C KAFS ++L QH H ++ C+ C K F R + L +H +H E C C ++F +S H HTG +P+ C+ C + F +L QH H+ +EC EC K F L +H + H +EK
Sbjct: 325 QRIHTGEKPYTCNECGKAFSQRGHFMEHQKIHTGEKPFKCDECDKTFTRSTHLTQHQKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTG-AKPYECAECGKAFRHCSSLAQHQKTHTEEK 640 HSP 5 Score: 199.134 bits (505), Expect = 9.051e-53 Identity = 116/328 (35.37%), Postives = 164/328 (50.00%), Query Frame = 3
Query: 1098 DPPSQTPSQRAQRQHKPTKKHICNVCSKEFKTNSLLKKHSVLHGPPVHYECQTCGKTFIRKTALKRHELCHQNDRPHKCHECGKGFKESSNLAKHVIIHSGERPHACDVCNARFRQLGHLLKHVVIHKPEKPYKCTSCDKAFKRKEHLRDHMIIHTGDFPFQCEFCDKKFRFKTNLKVHVMQHSGRKDFVCHICNKAFSGKASLTQHLVCHDPTHSFSCEVCQKRFSRKAHLKRHMDVHRNEPKLVCVFCKESFPDRASYKTHLLTHTGSKPFFCSICEKRFGAKSYLQQHLLTHSNDGGTFECLECHKKFHTQEILDKHTQKHLKEK 2081
+ PS T QR KP K C+ C K F + L +H +H Y C CGK F ++ H+ H ++P KC EC K F S++L +H IH+GE+ + C+ C F ++H +IH EKPY+C C KAF + +L H HTG+ P+ C C K F + ++L H+ H+G K + C+ C KAFS +SLTQH H F C C K FS ++L +H H E C C ++F +S H HTG KP+ C C K F S L QH H+ + ++C EC + F+ L +H + H K
Sbjct: 289 EGPSLTQHQRIHTGEKPYK---CDECGKAFSQRTHLVQHQRIHTGEKPYTCNECGKAFSQRGHFMEHQKIHTGEKPFKCDECDKTFTRSTHLTQHQKIHTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGE-RPYKCNECGRAFNQNIHLTQHKRIHTGAK 612 HSP 6 Score: 197.978 bits (502), Expect = 1.879e-52 Identity = 107/281 (38.08%), Postives = 144/281 (51.25%), Query Frame = 3
Query: 1140 HKPTKKHICNVCSKEFKTNSLLKKHSVLHGPPVHYECQTCGKTFIRKTALKRHELCHQNDRPHKCHECGKGFKESSNLAKHVIIHSGERPHACDVCNARFRQLGHLLKHVVIHKPEKPYKCTSCDKAFKRKEHLRDHMIIHTGDFPFQCEFCDKKFRFKTNLKVHVMQHSGRKDFVCHICNKAFSGKASLTQHLVCHDPTHSFSCEVCQKRFSRKAHLKRHMDVHRNEPKLVCVFCKESFPDRASYKTHLLTHTGSKPFFCSICEKRFGAKSYLQQHLLTH 1982
H K + CN C K F S L +H +H +EC CGK F + L +H+ H ++ ++C ECGK F SS+LAKH IH+GE+P+ C C F L++H IH E+PYKC C +AF + HL H IHTG P++C C K FR ++L H H+ K + C+ C K FS + LTQH H + C C K FSR HL H + H E C C+++F H H+G KPF C+ C K F +S L +H H
Sbjct: 468 HTGEKPYKCNECGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTGAKPYECAECGKAFRHCSSLAQHQKTHTEEKPYQCNKCEKTFSQSSHLTQHQRIHTGEKPYKCNECDKAFSRSTHLTEHQNTHTGEKPYNCNECRKTFSQSTYLIQHQRIHSGEKPFGCNDCGKSFRYRSALNKHQRLH 748 HSP 7 Score: 196.438 bits (498), Expect = 6.924e-52 Identity = 111/314 (35.35%), Postives = 159/314 (50.64%), Query Frame = 3
Query: 1140 HKPTKKHICNVCSKEFKTNSLLKKHSVLHGPPVHYECQTCGKTFIRKTALKRHELCHQNDRPHKCHECGKGFKESSNLAKHVIIHSGERPHACDVCNARFRQLGHLLKHVVIHKPEKPYKCTSCDKAFKRKEHLRDHMIIHTGDFPFQCEFCDKKFRFKTNLKVHVMQHSGRKDFVCHICNKAFSGKASLTQHLVCHDPTHSFSCEVCQKRFSRKAHLKRHMDVHRNEPKLVCVFCKESFPDRASYKTHLLTHTGSKPFFCSICEKRFGAKSYLQQHLLTHSNDGGTFECLECHKKFHTQEILDKHTQKHLKEK 2081
H K + CN C K F +S L +H H Y+C CGK+F ++L +H H ++P+KC+ECGK F S+L +H IH+ E+P C C F L +L +H H EK Y+C C KAF R L H IHTG+ P+QC C K F + ++L H H+G + + C+ C +AF+ LTQH H + C C K F + L +H H E C C+++F + H HTG KP+ C+ C+K F ++L +H TH+ + + C EC K F L +H + H EK
Sbjct: 412 HTGEKPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTGAKPYECAECGKAFRHCSSLAQHQKTHTEEKPYQCNKCEKTFSQSSHLTQHQRIHTGEKPYKCNECDKAFSRSTHLTEHQNTHTGEK-PYNCNECRKTFSQSTYLIQHQRIHSGEK 724 HSP 8 Score: 196.052 bits (497), Expect = 7.507e-52 Identity = 113/313 (36.10%), Postives = 154/313 (49.20%), Query Frame = 3
Query: 1131 QRQHKPTKKHICNVCSKEFKTNSLLKKHSVLHGPPVHYECQTCGKTFIRKTALKRHELCHQNDRPHKCHECGKGFKESSNLAKHVIIHSGERPHACDVCNARFRQLGHLLKHVVIHKPEKPYKCTSCDKAFKRKEHLRDHMIIHTGDFPFQCEFCDKKFRFKTNLKVHVMQHSGRKDFVCHICNKAFSGKASLTQHLVCHDPTHSFSCEVCQKRFSRKAHLKRHMDVHRNEPKLVCVFCKESFPDRASYKTHLLTHTGSKPFFCSICEKRFGAKSYLQQHLLTHSNDGGTFECLECHKKFHTQEILDKHTQKH 2069
Q+ H K + C C K F S L +H +H Y+C CGK F ++L +H H ++P +C ECGK F SNL +H H+ E+ + C C F + L KH IH EKPY+C C K F L H IHTG+ P++C C + F +L H H+G K + C C KAF +SL QH H + C C+K FS+ +HL +H +H E C C ++F H THTG KP+ C+ C K F +YL QH HS + F C +C K F + L+KH + H
Sbjct: 437 QKTHTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTGAKPYECAECGKAFRHCSSLAQHQKTHTEEKPYQCNKCEKTFSQSSHLTQHQRIHTGEKPYKCNECDKAFSRSTHLTEHQNTHTGEKPYNCNECRKTFSQSTYLIQHQRIHSGE-KPFGCNDCGKSFRYRSALNKHQRLH 748 HSP 9 Score: 187.193 bits (474), Expect = 6.305e-49 Identity = 100/258 (38.76%), Postives = 139/258 (53.88%), Query Frame = 3
Query: 1131 QRQHKPTKKHICNVCSKEFKTNSLLKKHSVLHGPPVHYECQTCGKTFIRKTALKRHELCHQNDRPHKCHECGKGFKESSNLAKHVIIHSGERPHACDVCNARFRQLGHLLKHVVIHKPEKPYKCTSCDKAFKRKEHLRDHMIIHTGDFPFQCEFCDKKFRFKTNLKVHVMQHSGRKDFVCHICNKAFSGKASLTQHLVCHDPTHSFSCEVCQKRFSRKAHLKRHMDVHRNEPKLVCVFCKESFPDRASYKTHLLTHTG 1904
+R H K C+ C K F S L +H H YEC+ CGK FIR ++L +HE H ++P++CHECGK F S+L +H IH+GERP+ C+ C F Q HL +H IH KPY+C C KAF+ L H HT + P+QC C+K F ++L H H+G K + C+ C+KAFS LT+H H ++C C+K FS+ +L +H +H E C C +SF R++ H H G
Sbjct: 493 RRIHTREKPFECSECGKAFSYLSNLNQHQKTHTQEKAYECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYGSSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTGAKPYECAECGKAFRHCSSLAQHQKTHTEEKPYQCNKCEKTFSQSSHLTQHQRIHTGEKPYKCNECDKAFSRSTHLTEHQNTHTGEKPYNCNECRKTFSQSTYLIQHQRIHSGEKPFGCNDCGKSFRYRSALNKHQRLHPG 750 The following BLAST results are available for this feature:
BLAST of TCONS_00001680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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