TCONS_00001677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001677
Unique NameTCONS_00001677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001677 ID=TCONS_00001677|Name=TCONS_00001677|organism=Clytia hemisphaerica|type=transcript|length=342bp
TTCGTGTCAAAAATGATTGAACCAAAAGACGACGACCCCTACAGTTTCAC
CAAACACTTACCAACACGTCCgcaccaatcagattgcagttCTAATGATC
AAACTGATCACGTGATTGTTCGAATGGTTAGATATGTTTCATATTCACCT
TACGATGCAATTTGTGATGACGAACTTCAAACTAttgttgaagaagaaaa
tgaagaagaagagatTGATTCCTTGTTGTCTGATATTGGCGGTTTAAGAG
CGGTGATAATTGACGATGATGACGTGTTTGAATCAAATCAAGATTTGTTG
ACACGAAACAAAAATGACAATGCTCTTATATGTCAAAATACT
Run BLAST on NCBI

protein sequence of TCONS_00001677-protein

>TCONS_00001677-protein ID=TCONS_00001677-protein|Name=TCONS_00001677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
FVSKMIEPKDDDPYSFTKHLPTRPHQSDCSSNDQTDHVIVRMVRYVSYSP
YDAICDDELQTIVEEENEEEEIDSLLSDIGGLRAVIIDDDDVFESNQDLL
TRNKNDNALICQNT
Run BLAST on NCBI

transcript from alignment at sc0000011:497992..498858-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001677 ID=TCONS_00001677|Name=TCONS_00001677|organism=Clytia hemisphaerica|type=transcript|length=867bp|location=Sequence derived from alignment at sc0000011:497992..498858- (Clytia hemisphaerica)
TTCGTGTCAAAAATGATTGAACCAAAAGACGACGACCCCTACAGTTTCAC
CAAACACTTACCAACACGTCCGCACCAATCAGATTGCAGTTCTAATGATC
AAACTGATCACGTGATTGTTCGAATGGTTAGATATGTTTCATATTCACCT
TACGATGCAATTTGTGATGACGAACTTCAAACTATTGTTGAAGAAGAAAA
TGAAGAAGAAGAGATTGATTCCTTGTTGTCTGATATTGGCGGTTTAAGGT
TTGAGATTTAATTTGATTTTGATGTTCCAGAGACCGTAGTTCAATTGCTA
GCCAGCCAGGTCATAAGAAATATTCCACAAAGGTACTTGATGCCTCTCCG
CTTAATGCTCAGCAATTAGAGAAGAGTTGAGGGTGAGTGGAGACCCAGGG
AGAATGAGTGGTGCCCTCTTTTACCTACCTGAAGTTACAAACTTACTACT
TACTCTGTGACTACAGTCGAAGGCAATTAGAAGGCTTCTCTTTCGATTAC
CGGAACGAGTCAAGTAGAGAGACACTTAATACCATTTTTGTACTAAATAA
GTCTTGACCCGGCCGAGGATTGAACCCTTGCGCACCGTGGCCAAATGCTC
TATACCTTTGTACAACAGTCGCTATTTCCTGCGGCTAAAGACTCGATAGT
GGAAGTTCCATATATTAAAGAGTTTGCTTATTGCTCATATTACTTCCAAT
GAGTTTAAATTCATCAAGTTTCACTACTGAGATTTACTGAGACGCATTAT
GGATAGAATGATTCTTTCTTTAGAGCGGTGATAATTGACGATGATGACGT
GTTTGAATCAAATCAAGATTTGTTGACACGAAACAAAAATGACAATGCTC
TTATATGTCAAAATACT

Coding sequence (CDS) from alignment at sc0000011:497992..498858-

>TCONS_00001677 ID=TCONS_00001677|Name=TCONS_00001677|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000011:497992..498858- (Clytia hemisphaerica)
AGCGGTGATAATTGACGATGATGACGTGTTTGAATCAAATCAAGATTTGT
TGACACGAAACAAAAATGACAATGCTCTTATATGTCAAAATACTTTCGTG
TCAAAAATGATTGAACCAAAAGACGACGACCCCTACAGTTTCACCAAACA
CTTACCAACACGTCCGCACCAATCAGATTGCAGTTCTAATGATCAAACTG
ATCACGTGATTGTTCGAATGGTTAGATATGTTTCATATTCACCTTACGAT
GCAATTTGTGATGACGAACTTCAAACTATTGTTGAAGAAGAAAATGAAGA
AGAAGAGATTGATTCCTTGTTGTCTGATATTGGCGGTTTAAGAGCGGTGA
TAATTGACGATGATGACGTGTTTGAATCAAATCAAGATTTGTTGACACGA
AACAAAAATGACAATGCTCTTATATGTCAAAATACTTTCGTGTCAAAAAT
GATTGAACCAAAAGACGACGACCCCTACAGTTTCACCAAACACTTACCAA
CACGTCCGCACCAATCAGATTGCAGTTCTAATGATCAAACTGATCACGTG
ATTGTTCGAATGGTTAGATATGTTTCATATTCACCTTACGATGCAATTTG
TGATGACGAACTTCAAACTATTGTTGAAGAAGAAAATGAAGAAGAAGAGA
TTGATTCCTTGTTGTCTGATATTGGCGGTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000871XLOC_000871Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001677-proteinTCONS_00001677-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001677-exon-sc0000011-1575043694:498611..498858TCONS_00001677-exon-sc0000011-1575043694:498611..498858Clytia hemisphaericaexon
TCONS_00001677-exon-sc0000011-1575043694:497992..498085TCONS_00001677-exon-sc0000011-1575043694:497992..498085Clytia hemisphaericaexon
TCONS_00001677-exon-sc0000011-1510915933:498611..498858TCONS_00001677-exon-sc0000011-1510915933:498611..498858Clytia hemisphaericaexon
TCONS_00001677-exon-sc0000011-1510915933:497992..498085TCONS_00001677-exon-sc0000011-1510915933:497992..498085Clytia hemisphaericaexon
TCONS_00001677-exon-sc0000011-1491911889:498611..498858TCONS_00001677-exon-sc0000011-1491911889:498611..498858Clytia hemisphaericaexon
TCONS_00001677-exon-sc0000011-1491911889:497992..498085TCONS_00001677-exon-sc0000011-1491911889:497992..498085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:497992..498858 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.06822	4.68219	0.906079	0.295486	0	0.56852	1.37179	1.28425	0.449568	1.67059	2.16202	0.710612	1.41925	1.10543	0.757343	1.30039	0.600741	0.410494	1.70136	1.48362	0.515815	0	7.95206	8.61989	0.572792	0.255602	0.365765	0	10.6585	12.6692
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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