TCONS_00001658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001658
Unique NameTCONS_00001658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001658 ID=TCONS_00001658|Name=TCONS_00001658|organism=Clytia hemisphaerica|type=transcript|length=1451bp
AAAACTTATTATGTAATGCCTGGTCACTAATATACTTTGGTTGATTTGTA
TTTTGCTGACTCGGCATTTTACTTTTCTTGACAGTATGGAATTTCCAGTC
CCTGCGATTGTATTTCTGTGCGTATTATGTGGCTGTATTATCATACTATG
CATCGTTTATCAACTCCTAAAACGTGATATGTGCTGTAACTTCGAAGCGG
GTCTTGGAGAAATCGAGAAAGCCACAAAGAATGGATACACAGAGCTCACC
GAGCATTTTTACGACTTTGATGAAACCGAAGGCCCGACTACGGATGATGA
CCCTCAGAGTCGGAAATCAAGCCGTCGTAGTAGCCGACGTAGTAGTTACG
ATTTGACGGCGACAAGTCAATCAGGGGGTGAGATGGGAGTCGATTCTTCA
TCGATATATGGCGGAGAATCGATTGATATTCGAATTAGTGGACCCGAAGA
TGAAGCCCAGAGACATGCTGGCAAAATTCTATTCGAATTCAATTATACCC
CTGAAACACAAAAGTTGTCTGTGACGGTTATTAAGGCTGCCGACGTCCCG
TCTAAAGCACGTGGAGGATCGTCCGCCATTCAAGTACGGTTGGTACTTCT
ACCGACTAAAGGACAACGGTTCAAAACAAAAGTTCGACCGGCTTCTAACC
CGGTTTTTAATGAGACATTTACATTTATGTATGTTGATCAGATAGCCATC
AGTCAATTCCAAATTCGAATTCGTATTTACGGTCAGGAGCGTTATAACCA
AGGACGATTGATCGGTGAGCTGATACAACCACTGAAAGAATTGAATTTAT
TTAATCCAGCTACGGAAGAAAATCAAGTATGGAAAACGTTAGCACCCAGA
GCTCTAACGAGCGCTGATTCCATGTACGATTTATCGGATACTACAAGTGT
CGGTTCACCTGGTTTTGGTTCCCCGATTTTGGGTGGTTCCCAATCCTCAT
TGACTGGACATTCAAGTGCACCAGAGCTTCTAATTTCTCTGTGTTATGCA
TCTTTGACGGGCCGTTTGACAGTTGAGGTGCTGAAAGCAAGTAATCTCCG
ACATTTACAACTACAAAGGGCACCAGATTCGTACGTCAAGATTGAGGTAT
TATCGGCACGTGGCAAGCGCGTTGCAAAAAGTAAAACTACCATCCGACGA
TCTATGACAGATCCCGAATTTAACGAATCGTTCGTCTTTCAAATGTCAGA
GTCGGATTTGCAGGAAGTGACGTTAGTCTTTTCCGTCATTTGTATTTCGA
AGACACGAAAGAAGAAAGATGTTTTGGGTTGGTTTACTATGGGTAAAGAA
GCCAATAGTTTGGATGAGATCGACCATTGGGAAGAAATGATCGCCCACAA
AGAACAGAAATCAACGCACTATCATGTTTTACTACAAGCTTGAATCGATT
GATTCAACATAATTTATTCGGTAGAAAATAATATTGTTGTTTTCTTCATG
G
Run BLAST on NCBI

transcript from alignment at sc0000011:365223..367899-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001658 ID=TCONS_00001658|Name=TCONS_00001658|organism=Clytia hemisphaerica|type=transcript|length=2677bp|location=Sequence derived from alignment at sc0000011:365223..367899- (Clytia hemisphaerica)
AAAACTTATTATGTAATGCCTGGTCACTAATATACTTTGGTTGATTTGTA TTTTGCTGACTCGGCATTTTACTTTTCTTGACAGTATGGAATGTAAGTTG AAATTGTGCTCTAAACTTTCTTTTCCGCCTTGAAGTTTTTATCCTTATAT AATGATGTGGGTACAATGCTTCCCGTTCGAGTTTAACACCTTTTGTCTTT CTTTTCTAGTTCCAGTCCCTGCGATTGTATTTCTGTGCGTATTATGTGGC TGTATTATCATACTATGCATCGTTTATCAACTCCTAAAACGTGATATGTG CTGTAACTTCGAAGCGGGTCTTGGAGAAATCGAGAAAGCCACAAAGAATG GATACACAGAGCTCACCGAGCATTTTTACGACTTTGATGAAACCGAAGGC CCGACTACGGATGATGACCCTCAGAGTCGGAAATCAAGCCGTCGTAGTAG CCGACGTAGTAGTTACGATTTGACGGCGACAAGTCAATCAGGGGGTGAGA TGGGAGTCGATTCTTCATCGATATATGGCGGAGAATCGATTGATATTCGA ATTAGTGGACCCGAAGATGAAGCCCAGAGACATGCTGGCAAAATTCTATT CGAATTCAATTATACCCCTGAAACACAAAAGTTGTCTGTGACGGTTATTA AGGCTGCCGACGTCCCGTCTAAAGCACGTGGAGGATCGTCCGCCATTCAA GTACGGTTGGTACTTCTACCGACTAAAGGACAACGGTTCAAAACAAAAGT TCGACCGGCTTCTAACCCGGTTTTTAATGAGACATTTACATTTATGTATG TTGATCAGATAGCCATCAGTCAATTCCAAATTCGAATTCGTATTTACGGT CAGGAGCGTTATAACCAAGGACGATTGATCGGTGAGCTGATACAACCACT GAAAGAATTGAATTTATTTAATCCAGCTACGGAAGAAAATCAAGTATGGA AAACGTTAGCACCCAGAGCTCTAACGGTGAGTATTCAAACTTCATCTAGT AAGAGGGCGTTCTTTAGGATCTTACTTATAATTGTCTAATGTAAAATATT TTAAAAACACTACTCTTTAATTTTTCGTAGAAGGGCATAGTGGTCGTAGT ACTTGAGATATTGGGGTGAATTTGTGGTTTCATATAGTTTATTTTCGCTT TTTTGACATAAAGTAATAATAGGAGTTGTTAAATTGACATTATTTTGAAC CCGTACAATTTGGTACAAGAGTATTATGATGGCTTTTTACACGATTTTGC ATGATTGAAGAATCATTTTCAGATTGTGTGTTTGATGTATAATATACTTT TCAGAGCGCTGATTCCATGTACGATTTATCGGATACTACAAGTGTCGGTT CACCTGGTTTTGGTTCCCCGATTTTGGGTGGTTCCCAATCCTCATTGACT GGACATTCAAGTGCACCAGAGCTTCTAATTTCTCTGTGTTATGCATCTTT GACGGGCCGTTTGACAGTTGAGGTGCTGAAAGCAAGTAATCTCCGACATT TACAACTACAAAGGGCACCAGGTGTGTATTATGTTTTATTCTTTTATTTT ATTTGTTCTGACAATCCTCAAAATTCTACGCTTAGAATATTTTGACTCTG GATGGCTGTGAATTTTCAGATGGTCGATAAAACAATTCTAGTTTATTAAA AGATAAGCTAAAATCTATAATATCGTGATCGTATCAACTAATATCTTAAC AAATATAACTGGAACGTTTGAAAAAGTTTACATAAAATCGTATGTTTTAG AATTCATAATATTCACGACATAATGTTTCACGGATACCCCCAAAACAACC CGGGTGTCTGTCACACTAGTTTCATTTTTAAAAATTCAAAACTAGTGTCA AACACTCGGGCTTTTTGGGGGGCATCCGTATAAAAGATTACTTTATGACC AGTTTGCAAAGTATGGCAAGGCTGCACTCGAGGAAAAATTCGGAAATACC AAGTTCTGCACTGGAAGAACGCACCTGATAAATTTTGGTCCGGACAGGGT GCACCTAGATACCTCGGAAATTCGTCCAAAAAGGCAAAAATTGCTAAAAT TAGCTGCACTTGAAGAAAAAATAGCTGAACTTTGCACTTGAGGTTAAAAA AACGTTTGAATTTGCACCTGCACTCAACTTTTTCCGAGTTGTGCACTCGA GATCTCGAGCAAACTTGTCACACTCTGCAAATTGGCTTTATGAATACCAC GAGTTCGGTCGAGTGACTCGCAAAATACATTATTGTAAAAACCCACAATA CTCCCACTAACCGGTTTGGACTCTTTCCTAACCCATCGTCATAAAAATTT AGATTCGTACGTCAAGATTGAGGTATTATCGGCACGTGGCAAGCGCGTTG CAAAAAGTAAAACTACCATCCGACGATCTATGACAGATCCCGAATTTAAC GAATCGTTCGTCTTTCAAATGTCAGAGTCGGATTTGCAGGAAGTGACGTT AGTCTTTTCCGTCATTTGTATTTCGAAGACACGAAAGAAGAAAGATGTTT TGGGTTGGTTTACTATGGGTAAAGAAGCCAATAGTTTGGATGAGATCGAC CATTGGGAAGAAATGATCGCCCACAAAGAACAGAAATCAACGCACTATCA TGTTTTACTACAAGCTTGAATCGATTGATTCAACATAATTTATTCGGTAG AAAATAATATTGTTGTTTTCTTCATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000865XLOC_000865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001658-exon-sc0000011-1575043694:367808..367899TCONS_00001658-exon-sc0000011-1575043694:367808..367899Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1575043694:366924..367690TCONS_00001658-exon-sc0000011-1575043694:366924..367690Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1575043694:366379..366595TCONS_00001658-exon-sc0000011-1575043694:366379..366595Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1575043694:365223..365597TCONS_00001658-exon-sc0000011-1575043694:365223..365597Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1510915933:367808..367899TCONS_00001658-exon-sc0000011-1510915933:367808..367899Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1510915933:366924..367690TCONS_00001658-exon-sc0000011-1510915933:366924..367690Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1510915933:366379..366595TCONS_00001658-exon-sc0000011-1510915933:366379..366595Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1510915933:365223..365597TCONS_00001658-exon-sc0000011-1510915933:365223..365597Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1491911889:367808..367899TCONS_00001658-exon-sc0000011-1491911889:367808..367899Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1491911889:366924..367690TCONS_00001658-exon-sc0000011-1491911889:366924..367690Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1491911889:366379..366595TCONS_00001658-exon-sc0000011-1491911889:366379..366595Clytia hemisphaericaexon
TCONS_00001658-exon-sc0000011-1491911889:365223..365597TCONS_00001658-exon-sc0000011-1491911889:365223..365597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:365223..367899 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.223364 0 0 0 0.140609 1.56527 17.6694 15.1964 15.6714 13.3397 4.32185 12.574 9.10427 9.57356 1.77408 0.964308 6.0585 12.7139 17.0031 17.7143 7.05421 8.63554 1.93182 3.2318 4.9077 2.97147 4.72947 2.98913 0.414711 0.211537
Blast
BLAST of TCONS_00001658 vs. Swiss-Prot (Human)
Match: SYT14 (Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 2.923e-57
Identity = 114/316 (36.08%), Postives = 182/316 (57.59%), Query Frame = 2
Query:  443 PEDEAQRHAGKILFEFNYTPETQKLSVTVIKAADVPSKARGGSSAIQVRLVLLPTKGQRFKTKVRPASNPVFNETFTFMYVDQIAISQFQIRIRIYGQERYNQGRLIGELIQPLKELNLFNPATEENQVWKTLAPRALTSADSMYDLSDTTSVGSPGFGSPILGGSQSSLTGHSSAPELLISLCYASLTGRLTVEVLKASNLRHLQLQRAPDSYVKIEVLSARGKRVAKSKTTIRRSMTDPEFNESFVFQMSESDLQEVTLVFSVICISKTRKKKDVLGWFTMGKEANSLDEIDHWEEMIAHKEQKSTHYHVLLQA 1390
            PE EA+   G +   F+Y  + QKL VTV    D+P+  R G ++ QV LVLLP K QR KT ++    PVF ETF F +V+   I  + +R R+YG  R  + +++GE I  L +LNL    +    +  +       S  S+ ++S + S  S           QS    H S PE+LI L Y + TGRL+ EV+K S+ ++L   R P++YVK+ +L++ G+ ++K KT+IRR   +P + E+FVFQ++   L +VTL+ SV    ++ K+K+++GW ++G  ++  +E++HW EM   K Q+   +H LL++
Sbjct:  255 PEPEAK--YGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSS----------CQS--LEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLTLLNSMGQEMSKCKTSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVY-NKRSMKRKEMIGWISLGLNSSGEEELNHWTEMKESKGQQVCRWHALLES 555          
The following BLAST results are available for this feature:
BLAST of TCONS_00001658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT142.923e-5736.08Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=... [more]
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