TCONS_00001657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001657
Unique NameTCONS_00001657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2092

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001657 ID=TCONS_00001657|Name=TCONS_00001657|organism=Clytia hemisphaerica|type=transcript|length=2092bp
GTTATGCTGTCAAATTGTTagaagaaattttcacaagaTGCTTATGAAGT
GTTATACAGTTCATGTTGATTGAGTGTTCAAAGAAGTTCTGAAAGATGAC
CTTGATGACTTTTGATGCCGATGACGTTGAAGCTATCAATGTTGGTCAAG
ATAAACATACCAGTTTCCATGACGATAATTGAGAAGAATGATCCTTCACG
CCACTACACCACCGCCCCCACCACCTGAAgTTCCAGTCCCTGCGATTGTA
TTTCTGTGCGTATTATGTGGCTGTATTATCATACTATGCATCGTTTATCA
ACTCCTAAAACGTGATATGTGCTGTAACTTCGAAGCGGGTCTTGGAGAAA
TCGAGAAAGCCACAAAGAATGGATACACAGAGCTCACCGAGCATTTTTAC
GACTTTGATGAAACCGAAGGCCCGACTACGGATGATGACCCTCAGAGTCG
GAAATCAAGCCGTCGTAGTAGCCGACGTAGTAGTTACGATTTGACGGCGA
CAAGTCAATCAGGGGGTGAGATGGGAGTCGATTCTTCATCGATATATGGC
GGAGAATCGATTGATATTCGAATTAGTGGACCCGAAGATGAAGCCCAGAG
ACATGCTGGCAAAATTCTATTCGAATTCAATTATACCCCTGAAACACAAA
AGTTGTCTGTGACGGTTATTAAGGCTGCCGACGTCCCGTCTAAAGCACGT
GGAGGATCGTCCGCCATTCAAGTACGGTTGGTACTTCTACCGACTAAAGG
ACAACGGTTCAAAACAAAAGTTCGACCGGCTTCTAACCCGGTTTTTAATG
AGACATTTACATTTATGTATGTTGATCAGATAGCCATCAGTCAATTCCAA
ATTCGAATTCGTATTTACGGTCAGGAGCGTTATAACCAAGGACGATTGAT
CGGTGAGCTGATACAACCACTGAAAGAATTGAATTTATTTAATCCAGCTA
CGGAAGAAAATCAAGTATGGAAAACGTTAGCACCCAGAGCTCTAACGAGC
GCTGATTCCATGTACGATTTATCGGATACTACAAGTGTCGGTTCACCTGG
TTTTGGTTCCCCGATTTTGGGTGGTTCCCAATCCTCATTGACTGGACATT
CAAGTGCACCAGAGCTTCTAATTTCTCTGTGTTATGCATCTTTGACGGGC
CGTTTGACAGTTGAGGTGCTGAAAGCAAGTAATCTCCGACATTTACAACT
ACAAAGGGCACCAGACACTTACGTCAAAGTTTCAATGTTCAACGCGGTGG
GACAACAACTGGCCAAAAGTAAAACTTCAATCCGTCGTTTAATGTTCGAA
CCCGAATACAATGAAACTTTCGTTTTCCAAATTATCGAGTTCGATTTAGC
AAGTGTCAGCCTCATGTTTTcaatcatgaatatcaagaaaatGCGACGAA
AAGAAATTCTGGGTTGGTTTTCTATTGGTAAAGATAACACTTCGGAAGAA
GAACTCTTCCATTGGCGTGAAATGCTTGAAGCGAAAGGAAAGAAAGTTCG
TAAATGGCATATTTTGTCGGCTGTAAATCGAAGCTTTGACGATGAATACT
GAAGTGGGAAATCAAAGAGTGCAGACAAAATTATCTTCCTTTTACACAAC
TCGAGACAAGCATTTAGATGCAGTATTTTAAGATTTGTACAGTTAAGTAA
CCCATTCCAGATCTTGACGTGGTattgtacaaaaaaaaatattggcaATA
AGAATAATATCCTAGACTTTCAACCATATATTAATCTACAAATTTCTTCA
TTAAATTGGCTACGTAGAAATTCTGGTTAATATCTGTCTGGTTGATATAA
GAGGTATTATTAAGTCGAAGCAAGACTTTATCACACctccaaaaaaagaa
ataacCTCCTTTCAAGAGTCACGATTCTCCAAAAACTTTGACACAAATTT
GAACGGATtggattaaatttttattttgagattaaacaaattgaaagatt
gtaaaaattgttGTTATATTACTGTATTTAAAAATTGACTAATATTTTAT
TTTGGGCTTACTTTTTCTCATTAGATAGGTCAAGATAAAAAACTTAAACC
ATGGATAAGTTAGATctcattttcctttttaaaattGAGGAA
Run BLAST on NCBI

protein sequence of TCONS_00001657-protein

>TCONS_00001657-protein ID=TCONS_00001657-protein|Name=TCONS_00001657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MILHATTPPPPPPEVPVPAIVFLCVLCGCIIILCIVYQLLKRDMCCNFEA
GLGEIEKATKNGYTELTEHFYDFDETEGPTTDDDPQSRKSSRRSSRRSSY
DLTATSQSGGEMGVDSSSIYGGESIDIRISGPEDEAQRHAGKILFEFNYT
PETQKLSVTVIKAADVPSKARGGSSAIQVRLVLLPTKGQRFKTKVRPASN
PVFNETFTFMYVDQIAISQFQIRIRIYGQERYNQGRLIGELIQPLKELNL
FNPATEENQVWKTLAPRALTSADSMYDLSDTTSVGSPGFGSPILGGSQSS
LTGHSSAPELLISLCYASLTGRLTVEVLKASNLRHLQLQRAPDTYVKVSM
FNAVGQQLAKSKTSIRRLMFEPEYNETFVFQIIEFDLASVSLMFSIMNIK
KMRRKEILGWFSIGKDNTSEEELFHWREMLEAKGKKVRKWHILSAVNRSF
DDEY
Run BLAST on NCBI

transcript from alignment at sc0000011:362890..373391-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001657 ID=TCONS_00001657|Name=TCONS_00001657|organism=Clytia hemisphaerica|type=transcript|length=10502bp|location=Sequence derived from alignment at sc0000011:362890..373391- (Clytia hemisphaerica)
GTTATGCTGTCAAATTGTTAGAAGAAATTTTCACAAGATGCTTATGAAGT
GTTGTAAGCTCCCTTTTTCATTTTTAAAGTTTATGAAACACTCTTTTTTT
TAATCATAGACTTTATATAATACTGGAAAATCTACTGCAGATTCGCACGG
AAATTGTATCAGTCCTTGAATCTAAAATCTATCTACTTTGACGTCAAGGG
TCATTTTACGTCATTTTGCATTGATGCTCACCTAATTCAATGGTATTCCT
CTTTTTAGATACAGTTCATGTTGATTGAGTGTTCAAAGAAGTTCTGAAAG
ATGACCTTGATGACTTTTGATGCCGATGACGTTGAAGGTTTGCCTTTAAA
ATGTTTAGTTATCCTGCTTCTAAAGTTACCAGTATCAATACTGGTAAATG
TGTAAACTAAGAATTACAATACAGCGTACTTTAGATGAGAAACTCATCAA
TCCCTAAGTGAGGATTTAGAGTAAGGAACTCTGAAGTTAGAATTGCCATA
AAGGTAGAAAAGTGATCTTATAAAAGGTTGTCGAGAACTATAAATTCTAC
TGAGGGAGGAGTGTTTTTGAAATGTCCTTCGTCCAGTGGAATTCCAACAA
CTTGATATCGTCTCTTCTTTCCCACTGTTTATTGACAATAAGTGAAAAAG
AAAAAGAAAAGTGATGAAAAAAAAGTAAAAGGGAATGAGTCTAATCATCA
CCCAACCATCCAACCAACAGAAAAGGAATGTGATTAAAAATAAATAACTT
TATGAAAGCATAAGACAATAGAAACAATAGGGATTGAAAGAAAAAAGGGG
GTCTTTTGAAATAAGAGAATTATTTTAAGTATATTTTCTTGCTGTTTTTC
TTTCATCCTCTTTTCTTTTAGATTTTATTTTCTTCATTTTTTTTCACTTT
AAAACTCACTTTATCTTGACAGTTGTGTTCGAAGGATCGACTAGAAGGAA
AATTTTTAGACTTTTCATATTTTTGACTGAATTGCTATGGTCAAAATTGA
CTCAGTAGTGGTAGATTATTGTTATTTATGATTTCGTTCACAGCTATCAA
TGTTGGTCAAGATAAACATACCAGTTTCCATGACGATAATTGAGAAGAAT
GATCCTTCACGCCACTACACCACCGCCCCCACCACCTGAAGGTATTTCTT
TTTGATTTGCTCATTGCTCAGTTCACGATTTATTAAAATGCTCATACCCG
GATTCTCATATTGTTCAATTAAGGTCAATGTTGTCTCTGCGCTACTGGAG
GATTGGGTTCCAGTGAACCAAGGTTGAATGACGTCAAAATGTTCATACAG
TTACTCTTAGGTTCCAAATAAATGACCCCCCCGCTTGTTAATTGTTCGAA
AATCTTCCAACCCCTAGACCTTATTAGGACCCCCTGAAGCCCCCCTGTTA
ATTAATTTCTGAGCATATTCTCAGTTTTCAAAGAGAAGGTCCCTCATTTT
GCTCTAAATAGCCTGATTTTAGCCTAGATTTAAAACATTTTTGGTTTTTC
AGAAGTACAAATTCCAACCTCCCAGCAATTAGGTCCCCCTCATTTATTAA
AATTTTGAAAATTTTCCAACCCAACAGGGGGGACTTTATTCGAACCCCCT
CCTGTTTATTTTGAACCTAATAGTAACTCGCTAGTTCGAATACCTACTTT
TTGCACAGGGGGCTGATATGTGTATTCAAGACAGTAACATGACCAGCTAG
AACTTTTTGGTTTAAAATTATATTCTTTAAATTTGGGATAAATATGACTT
GCAATCCTTTGTTCACTTTCAAAGCTCCAGTTCTTGTTAGATGTGGAACA
TCTTGAGAAATAATTGAAATTGATATCAGAATTCTTATGCATATTATTTA
TATCGGCCAGGGATTAAGTCGAAGAAATACTCACAGGCCAGCAATGGAAT
AGCATATCGAAAGTGCTAGATGTGCCATTTTCTGAATCATCATTAATTTA
GGCTCCAAATGAAATGGAAAAGACTTAGGTGCATGACCTATCTTTATCTT
TATTTATTTATAAGTTATCGCTGACTTTTCCCATTTTTCCTTAAAATTAC
TCTATGAAAAGACTTTCATTTTTGACAGCAAGGACGACAAAGTGGTAATG
GTTAACAGTGTAAGAGCGCAAAGAGTAATTTTTTTTAAATTTTAAACGGT
TACAGATGCTTAAAACTCATTCGAGGCACTATATAGACTATATAGCTGCC
ATAAAGACGTCATTTTAGAAGAATCAAAGATGATCGCCGTAATTAACGAA
CTTGATCACTCTAAAAAGAGTGCAAAATGTTATTCAAACCTACTTTAATG
AGATAAATTTTCGCGGGGATTAAATTTTGCGGTTGAGCTCATCGAGTTCA
TATATTGCACTATTGGGAGTTAATACTTTCACGGCTTTGTGCTTTTTTAC
GCCAAATTATGCAAATTGGTTATCGTATATACGCATTATTGGCGCTTCTT
TGATGTCAATACACATTTTAGAAGTAGTTATTTGACATTTTTCGAGTTTT
TCTCAGAAAATATTTCACGGATGAGGCCTTTCCAAACTTCCATTGGGACT
TAATTTCGCGGATGACACCCAACCTGTGAAATTTAATCCCCGCGAAAATT
TCTCCTGGCCACTTTATTTAAGTTATAAACCGAGTTATTTTTAACCGGTC
CGTCAGAAAAGGGAGAAGGTTAAGTTAAAGTGTACAGGTTACTTCAATTA
TTTAATAAAATTTTAAAAAATACAAAAAGTTCATTCAATATTTTGAAAAG
TTAGAAGCCATCTGTTTTTCATGGAAACTTTTTATAACTAATAAAGTGAT
CAAACTGTGGCTCAAATATCATGAACATTCGAAGATAATAAAAGTCACAA
CACGCTCAGCGAGATAGCTCTAATTTATGAATGATTAAAAGCATGTTATG
TACTCTTTCATTAAGCTTTTAAACACCTTTACCATTTGTTTAAACGTATA
AACCCGTCTTGCTACTTAATAAAGAGGCGTCTGATGAGCTTTTCAAGTTT
CAATATACGAACCTGTCTCAACGGCTGTGGGAATTCCCCCCGTGGAAATT
TAATTCGGGAATAGATAAAGAGATTTATTCAAACGGGAAGCAAAACACGC
TGCTCTAAATAATGATGCAAATTCAGGTGACGGAAAACTTTCACAATATT
AAATTTTAAATTCATGTTAGAAATTCTGTATTTTCTTAATCACTAGGGGT
TTTTTCAGTCCTAATCTAGAGTTTAATATGCCTCAGTAGGTGTGGATCCC
ACTTTGGTCCTTCTAGCAGGTTTTCAATCGGGTGATTCCCTTTTTTTTAT
CCAAGTTATTGATTATTTTTTATCTTGAAGAGCTATGACCATGAATGAGT
TGTTGTTCTCCATCATAAAACAAACTTCCAGGCTACCTCTCCTCTCCAAA
AGGGTTAACTCAATAAACTTTCTCATTAATTTCAACATGAAGATGCAAAT
TCAAAATGACTTTTTGTTTACCGTGAACGTTGGCATATAAAAGTCTTGAG
TACAAAAAGATTAAGTCTAAAACAACGATCAAGAACTGTTTTTTAAAAAC
TTGAGGTTTGGGTCTGCTAAAACTTCAGCAAATTTCAGAAATCACTGAGG
GAAATACTTGCAATACTGGTTTTGAAATTTTAAATGAAATTTACATTTCG
ATAAAAAGAAAGAAGAGCCGCGGCTAAGCTGAATTCATTAGCACTTCTAA
AAGAAGTGAGTAACGCCAACTATTGCTAATTCGAAATTAATTTTGCATAT
ATCTGAAATCTCTTATCAGCGTCCAAACCCCACCTTTTTTTCAATCTGAA
AACCTTCAACCCCTCCCAAAATCCAGGGAATCCAGGGCAGGTGCCCACTA
TTTTGTTGCAATGAAACAAATTTGAATTCCGTTTTTTTCTAAATTTTCAA
CGCAATAGAGAAACATTTAACGATTACTAAGGCGAAGTTCCGTTCAAATT
TTCTGATTCTTTGGCTTCTTTGTATCACAGCTTTTAGTGGATTTTAAACT
AGAAGAGGCGTGATTGGGACCTTTTTCTTGCGTGATGGCGTGATTAGAGA
TTTTTTTGGCGTGATGGCGTGATCAAGATTTTGGCGTGATCAAGATTTTG
GCGTGATGCGTGATAGGGCAAAAATTTGAGGCGTGATGCGTGATATGGGC
TATTTTTCGCTATTTTTTGCGTGATGACAAATTTTAGCGATTTTCGTGAT
GCGTGATGGAGAAAATTTTTTTGCGTGATGGCGTGATTAGAGATTTTTTT
GGCGTGATGGCGTGATCAAGCTTTTGGCGTGATCAAGATTTTGGCGTGAT
GCGTGATAGGGCAAAAATTTGAGGCGTGATGCGTGATATGGGCTATTTTT
CGCTATTTTTTGCGTGATGACAAATTTTAGCGATTTTCGTGATGCGGGAT
GGAGAAAATTTTTTTGCGTAATGGCGTGATTAGGGGTGCCGCGGGGGGGG
GGGGGGCTCTAGAAGAGGTGAAGAAATAGGCTACATTTTGCTGGGTTTGA
TTTTTTGATAGAGTAAAAAACACCGGGAGGAGGTGGATTTAATCAACCGG
GGTTAGCAAAAATTTAACAAGGAATGTTGATATTGCACACTCACGGACAA
AAGGTTGTAGACTTTTCAAAAATGCATGAAAATTTTCAAGCAAGCAAGCT
CTGAAAACCAATTTTTACCAGAGCCAATGTTTCAGTCTTTGAAAGTCCAA
AAATCACAAGAACTACTAGCAAGCTTATAGGTGTGTTTTCTATTCCAAAA
AGATTGGACCAAAACTGTTTGTTTTCTTCTATCTTCAGTGATCTTTAGAT
TAAAGTTTGTGATAATTAAGTTGGAGTCTCTGTGAGAACTTTAAACCAGA
TTTACTCTATCATTTCTATGAAATGTGTAGACTGGAAAGTCTCTATCATT
TTCCACGCATGCGTAAAAACTAATGAATCTTTCGTTCTATATCTGGAGTA
AATATTAAAAAGAAGGAAAAAAATATTTCAGGAAAAAATTATTATTTTAG
CGATAGATACAACAACAAAAATTTAAGGTTGTAAATTCTTTTGTTTTTTT
GTGCGTAAGGCAGATGTTTTCTATATATTTTCTCATTATATTTATAATTT
ATCAAAATATAAAAGTGAAGGTTGAAGAAGGAAAAGAGAGAGAAGAAGAG
CGAAAATTATCAAAATATGGGGTAGAGAACAAACGAAAAAATGGAGCAAA
ATATAAAGGCCTTTTAGGGTTTTTTCATATTATTTTTCACTCTCTATCCT
TTTACTCCCGTTCATTTTCTTCTTCTTTTTCTAATCAATTTTTCCTTTCT
TTTTTTCTCATTGCTACACCAGTGAAAGGGATTTGGTATACTAGTTTTTT
GCTGGACTGGAGAGTTGATGTGCCCGCAGAAGAAAAAATTTTTTCAGCGA
AAAAAAAGGGAAAATGTAGCCCCTTGTTTAACTACGGTGAAAGATTTTAG
CAGAACATTTCTGAGCTCTGCTTACTCGATATTGGAACCTGAAAAACTTA
TTATGTAATGCCTGGTCACTAATATACTTTGGTTGATTTGTATTTTGCTG
ACTCGGCATTTTACTTTTCTTGACAGTATGGAATGTAAGTTGAAATTGTG
CTCTAAACTTTCTTTTCCGCCTTGAAGTTTTTATCCTTATATAATGATGT
GGGTACAATGCTTCCCGTTCGAGTTTAACACCTTTTGTCTTTCTTTTCTA
GTTCCAGTCCCTGCGATTGTATTTCTGTGCGTATTATGTGGCTGTATTAT
CATACTATGCATCGTTTATCAACTCCTAAAACGTGATATGTGCTGTAACT
TCGAAGCGGGTCTTGGAGAAATCGAGAAAGCCACAAAGAATGGATACACA
GAGCTCACCGAGCATTTTTACGACTTTGATGAAACCGAAGGCCCGACTAC
GGATGATGACCCTCAGAGTCGGAAATCAAGCCGTCGTAGTAGCCGACGTA
GTAGTTACGATTTGACGGCGACAAGTCAATCAGGGGGTGAGATGGGAGTC
GATTCTTCATCGATATATGGCGGAGAATCGATTGATATTCGAATTAGTGG
ACCCGAAGATGAAGCCCAGAGACATGCTGGCAAAATTCTATTCGAATTCA
ATTATACCCCTGAAACACAAAAGTTGTCTGTGACGGTTATTAAGGCTGCC
GACGTCCCGTCTAAAGCACGTGGAGGATCGTCCGCCATTCAAGTACGGTT
GGTACTTCTACCGACTAAAGGACAACGGTTCAAAACAAAAGTTCGACCGG
CTTCTAACCCGGTTTTTAATGAGACATTTACATTTATGTATGTTGATCAG
ATAGCCATCAGTCAATTCCAAATTCGAATTCGTATTTACGGTCAGGAGCG
TTATAACCAAGGACGATTGATCGGTGAGCTGATACAACCACTGAAAGAAT
TGAATTTATTTAATCCAGCTACGGAAGAAAATCAAGTATGGAAAACGTTA
GCACCCAGAGCTCTAACGGTGAGTATTCAAACTTCATCTAGTAAGAGGGC
GTTCTTTAGGATCTTACTTATAATTGTCTAATGTAAAATATTTTAAAAAC
ACTACTCTTTAATTTTTCGTAGAAGGGCATAGTGGTCGTAGTACTTGAGA
TATTGGGGTGAATTTGTGGTTTCATATAGTTTATTTTCGCTTTTTTGACA
TAAAGTAATAATAGGAGTTGTTAAATTGACATTATTTTGAACCCGTACAA
TTTGGTACAAGAGTATTATGATGGCTTTTTACACGATTTTGCATGATTGA
AGAATCATTTTCAGATTGTGTGTTTGATGTATAATATACTTTTCAGAGCG
CTGATTCCATGTACGATTTATCGGATACTACAAGTGTCGGTTCACCTGGT
TTTGGTTCCCCGATTTTGGGTGGTTCCCAATCCTCATTGACTGGACATTC
AAGTGCACCAGAGCTTCTAATTTCTCTGTGTTATGCATCTTTGACGGGCC
GTTTGACAGTTGAGGTGCTGAAAGCAAGTAATCTCCGACATTTACAACTA
CAAAGGGCACCAGGTGTGTATTATGTTTTATTCTTTTATTTTATTTGTTC
TGACAATCCTCAAAATTCTACGCTTAGAATATTTTGACTCTGGATGGCTG
TGAATTTTCAGATGGTCGATAAAACAATTCTAGTTTATTAAAAGATAAGC
TAAAATCTATAATATCGTGATCGTATCAACTAATATCTTAACAAATATAA
CTGGAACGTTTGAAAAAGTTTACATAAAATCGTATGTTTTAGAATTCATA
ATATTCACGACATAATGTTTCACGGATACCCCCAAAACAACCCGGGTGTC
TGTCACACTAGTTTCATTTTTAAAAATTCAAAACTAGTGTCAAACACTCG
GGCTTTTTGGGGGGCATCCGTATAAAAGATTACTTTATGACCAGTTTGCA
AAGTATGGCAAGGCTGCACTCGAGGAAAAATTCGGAAATACCAAGTTCTG
CACTGGAAGAACGCACCTGATAAATTTTGGTCCGGACAGGGTGCACCTAG
ATACCTCGGAAATTCGTCCAAAAAGGCAAAAATTGCTAAAATTAGCTGCA
CTTGAAGAAAAAATAGCTGAACTTTGCACTTGAGGTTAAAAAAACGTTTG
AATTTGCACCTGCACTCAACTTTTTCCGAGTTGTGCACTCGAGATCTCGA
GCAAACTTGTCACACTCTGCAAATTGGCTTTATGAATACCACGAGTTCGG
TCGAGTGACTCGCAAAATACATTATTGTAAAAACCCACAATACTCCCACT
AACCGGTTTGGACTCTTTCCTAACCCATCGTCATAAAAATTTAGATTCGT
ACGTCAAGATTGAGGTATTATCGGCACGTGGCAAGCGCGTTGCAAAAAGT
AAAACTACCATCCGACGATCTATGACAGATCCCGAATTTAACGAATCGTT
CGTCTTTCAAATGTCAGAGTCGGATTTGCAGGAAGTGACGTTAGTCTTTT
CCGTCATTTGTATTTCGAAGACACGAAAGAAGAAAGATGTTTTGGGTTGG
TTTACTATGGGTAAAGAAGCCAATAGTTTGGATGAGATCGACCATTGGGA
AGAAATGATCGCCCACAAAGAACAGAAATCAACGCACTATCATGTTTTAC
TACAAGCTTGAATCGATTGATTCAACATAATTTATTCGGTAGAAAATAAT
ATTGTTGTTTTCTTCATGGAGCTATGTCAGTCCATATTGTGACTGATACA
TTCGACTTGATTCATATTTTTTTCAACGTTGTAATGTTGACTTGAAAAAC
AATCTGTGATGAATTTCGGAGATTTTGGAATCAAATTTGTACGAGTTTAC
TAAATCAAAATTCAATGTTTGTATTTTTGTGAAAAGCATATATTTGACCC
ATTGACCCAAACGGTATCATTTTACCCAGATTGACTTATATGAAATGTAT
ATATTGATTGGTTTGTAGGAAAAAGCACGATGCTTGTTTTCTTTGTGGGG
TTATTGAAATGTCTGGGACGGATGAATCGAGGCCAATTTACCATGGAATT
ATTATTCATAATCATCTGATGCACACATATTGAGCTCGGCCAAAATCATA
CAGTGGTAGTAGATATTTTGAAAATATTTTGGTATTTCTAGATACTTGTT
GATTTGCAAGGAAGAAATCATATCGTTGATGAGATATTGTTTTTGTTTTA
GAAAACGCTTTAGATGTTTTGTTTTTCTCATTATTTTATTTTGGGCGTTT
TGGTTTACATTGAAAATCTGTTGGAGAGAAGATATGACAAAAATACTATT
TTGGCTATAGTTTAACCACCCTCCCTAACTTAAGGCAAATATTATTTGCT
TGGATCCAAAAGTATATTTTAAAACTTTATTTTTACCATTAATTTTATCA
TATCACTCCAAATGTAATATATTATATTGTTAGAAAAGAAATATTTTTAG
GTAATTTAAAACAAATTTATCGGAAATATTTACAAAAGGCGTTTTGAATT
ATTTTATTCGTTTTAAAATATTTTGTCGCAAAAATTTTGGGCCTTGTTCC
CATGTTAGTTTAAGCAATTATTTTCAATATTATTTAAAAAAGAATCCTGT
CTGAAAAAGAGGCCATTAACGTACATTCGTTGTATTGAGTGAGTTGAATT
GAATTGATATCACTGTAACTTTTGGGCCACGGTGGATTTCTTTATTTCCT
TCGAAAATTACTATCATCTTGAAAGAAGGCTCTTATAATAGACCTATTCA
TAAATTACGTCACGAACATCACTTGCCTCGTATTCAAACAATTACCATGG
TGATTATGTCCCTTGAGACATAAAATGATTTTTTTATAAATAGAAGGAGT
TTTTCTAAAATCCGTTAATCACCATGGCAATAATTTCAAAACGAGGCAAG
TGATGTTCATAACGTAATTTATGAAAAGGTCTATTTCCTCCCAAAGGTCT
GGGAAGACGACTTTTGCAGATGACTTTTTGCAAAATCAATGCACCAGTTA
GTCACTGCAGTTTACAGTATAGTGCACTTAATTCATGTTTAGTTGGTACA
CAACGTTGTTTCAACGTCAATCTAACGTTATTTTATGACTATTTGGGGGC
TATGGTGAATACTTGAAAAAGACTTGATTCAGTGTTGCTTATTTTTGTTT
TTTCTTTGTTTTTTTTCACTTCAGACACTTACGTCAAAGTTTCAATGTTC
AACGCGGTGGGACAACAACTGGCCAAAAGTAAAACTTCAATCCGTCGTTT
AATGTTCGAACCCGAATACAATGAAACTTTCGTTTTCCAAATTATCGAGT
TCGATTTAGCAAGTGTCAGCCTCATGTTTTCAATCATGAATATCAAGAAA
ATGCGACGAAAAGAAATTCTGGGTTGGTTTTCTATTGGTAAAGATAACAC
TTCGGAAGAAGAACTCTTCCATTGGCGTGAAATGCTTGAAGCGAAAGGAA
AGAAAGTTCGTAAATGGCATATTTTGTCGGCTGTAAATCGAAGCTTTGAC
GATGAATACTGAAGTGGGAAATCAAAGAGTGCAGACAAAATTATCTTCCT
TTTACACAACTCGAGACAAGCATTTAGATGCAGTATTTTAAGATTTGTAC
AGTTAAGTAACCCATTCCAGATCTTGACGTGGTATTGTACAAAAAAAAAT
ATTGGCAATAAGAATAATATCCTAGACTTTCAACCATATATTAATCTACA
AATTTCTTCATTAAATTGGCTACGTAGAAATTCTGGTTAATATCTGTCTG
GTTGATATAAGAGGTATTATTAAGTCGAAGCAAGACTTTATCACACCTCC
AAAAAAAGAAATAACCTCCTTTCAAGAGTCACGATTCTCCAAAAACTTTG
ACACAAATTTGAACGGATTGGATTAAATTTTTATTTTGAGATTAAACAAA
TTGAAAGATTGTAAAAATTGTTGTTATATTACTGTATTTAAAAATTGACT
AATATTTTATTTTGGGCTTACTTTTTCTCATTAGATAGGTCAAGATAAAA
AACTTAAACCATGGATAAGTTAGATCTCATTTTCCTTTTTAAAATTGAGG
AA

Coding sequence (CDS) from alignment at sc0000011:362890..373391-

>TCONS_00001657 ID=TCONS_00001657|Name=TCONS_00001657|organism=Clytia hemisphaerica|type=CDS|length=5460bp|location=Sequence derived from alignment at sc0000011:362890..373391- (Clytia hemisphaerica)
ACACTTACGTCAAAGTTTCAATGTTCAACGCGGTGGGACAACAACTGGCC
AAAAGTAAAACTTCAATCCGTCGTTTAATGTTCGAACCCGAATACAATGA
AACTTTCGTTTTCCAAATTATCGAGTTCGATTTAGCAAGTGTCAGCCTCA
TGTTTTCAATCATGAATATCAAGAAAATGCGACGAAAAGAAATTCTGGGT
TGGTTTTCTATTGGTAAAGATAACACTTCGGAAGAAGAACTCTTCCATTG
GCGTGAAATGCTTGAAGCGAAAGGAAAGAAAGTTCGTAAATGGCATATTT
TGTCGGCTGTAAATCGAAGCTTTGACGATGAATACTGAAGCGCTGATTCC
ATGTACGATTTATCGGATACTACAAGTGTCGGTTCACCTGGTTTTGGTTC
CCCGATTTTGGGTGGTTCCCAATCCTCATTGACTGGACATTCAAGTGCAC
CAGAGCTTCTAATTTCTCTGTGTTATGCATCTTTGACGGGCCGTTTGACA
GTTGAGGTGCTGAAAGCAAGTAATCTCCGACATTTACAACTACAAAGGGC
ACCAGTTCCAGTCCCTGCGATTGTATTTCTGTGCGTATTATGTGGCTGTA
TTATCATACTATGCATCGTTTATCAACTCCTAAAACGTGATATGTGCTGT
AACTTCGAAGCGGGTCTTGGAGAAATCGAGAAAGCCACAAAGAATGGATA
CACAGAGCTCACCGAGCATTTTTACGACTTTGATGAAACCGAAGGCCCGA
CTACGGATGATGACCCTCAGAGTCGGAAATCAAGCCGTCGTAGTAGCCGA
CGTAGTAGTTACGATTTGACGGCGACAAGTCAATCAGGGGGTGAGATGGG
AGTCGATTCTTCATCGATATATGGCGGAGAATCGATTGATATTCGAATTA
GTGGACCCGAAGATGAAGCCCAGAGACATGCTGGCAAAATTCTATTCGAA
TTCAATTATACCCCTGAAACACAAAAGTTGTCTGTGACGGTTATTAAGGC
TGCCGACGTCCCGTCTAAAGCACGTGGAGGATCGTCCGCCATTCAAGTAC
GGTTGGTACTTCTACCGACTAAAGGACAACGGTTCAAAACAAAAGTTCGA
CCGGCTTCTAACCCGGTTTTTAATGAGACATTTACATTTATGTATGTTGA
TCAGATAGCCATCAGTCAATTCCAAATTCGAATTCGTATTTACGGTCAGG
AGCGTTATAACCAAGGACGATTGATCGGTGAGCTGATACAACCACTGAAA
GAATTGAATTTATTTAATCCAGCTACGGAAGAAAATCAAGTATGGAAAAC
GTTAGCACCCAGAGCTCTAACGATGATCCTTCACGCCACTACACCACCGC
CCCCACCACCTGAAGACACTTACGTCAAAGTTTCAATGTTCAACGCGGTG
GGACAACAACTGGCCAAAAGTAAAACTTCAATCCGTCGTTTAATGTTCGA
ACCCGAATACAATGAAACTTTCGTTTTCCAAATTATCGAGTTCGATTTAG
CAAGTGTCAGCCTCATGTTTTCAATCATGAATATCAAGAAAATGCGACGA
AAAGAAATTCTGGGTTGGTTTTCTATTGGTAAAGATAACACTTCGGAAGA
AGAACTCTTCCATTGGCGTGAAATGCTTGAAGCGAAAGGAAAGAAAGTTC
GTAAATGGCATATTTTGTCGGCTGTAAATCGAAGCTTTGACGATGAATAC
TGAAGCGCTGATTCCATGTACGATTTATCGGATACTACAAGTGTCGGTTC
ACCTGGTTTTGGTTCCCCGATTTTGGGTGGTTCCCAATCCTCATTGACTG
GACATTCAAGTGCACCAGAGCTTCTAATTTCTCTGTGTTATGCATCTTTG
ACGGGCCGTTTGACAGTTGAGGTGCTGAAAGCAAGTAATCTCCGACATTT
ACAACTACAAAGGGCACCAGTTCCAGTCCCTGCGATTGTATTTCTGTGCG
TATTATGTGGCTGTATTATCATACTATGCATCGTTTATCAACTCCTAAAA
CGTGATATGTGCTGTAACTTCGAAGCGGGTCTTGGAGAAATCGAGAAAGC
CACAAAGAATGGATACACAGAGCTCACCGAGCATTTTTACGACTTTGATG
AAACCGAAGGCCCGACTACGGATGATGACCCTCAGAGTCGGAAATCAAGC
CGTCGTAGTAGCCGACGTAGTAGTTACGATTTGACGGCGACAAGTCAATC
AGGGGGTGAGATGGGAGTCGATTCTTCATCGATATATGGCGGAGAATCGA
TTGATATTCGAATTAGTGGACCCGAAGATGAAGCCCAGAGACATGCTGGC
AAAATTCTATTCGAATTCAATTATACCCCTGAAACACAAAAGTTGTCTGT
GACGGTTATTAAGGCTGCCGACGTCCCGTCTAAAGCACGTGGAGGATCGT
CCGCCATTCAAGTACGGTTGGTACTTCTACCGACTAAAGGACAACGGTTC
AAAACAAAAGTTCGACCGGCTTCTAACCCGGTTTTTAATGAGACATTTAC
ATTTATGTATGTTGATCAGATAGCCATCAGTCAATTCCAAATTCGAATTC
GTATTTACGGTCAGGAGCGTTATAACCAAGGACGATTGATCGGTGAGCTG
ATACAACCACTGAAAGAATTGAATTTATTTAATCCAGCTACGGAAGAAAA
TCAAGTATGGAAAACGTTAGCACCCAGAGCTCTAACGATGATCCTTCACG
CCACTACACCACCGCCCCCACCACCTGAAGACACTTACGTCAAAGTTTCA
ATGTTCAACGCGGTGGGACAACAACTGGCCAAAAGTAAAACTTCAATCCG
TCGTTTAATGTTCGAACCCGAATACAATGAAACTTTCGTTTTCCAAATTA
TCGAGTTCGATTTAGCAAGTGTCAGCCTCATGTTTTCAATCATGAATATC
AAGAAAATGCGACGAAAAGAAATTCTGGGTTGGTTTTCTATTGGTAAAGA
TAACACTTCGGAAGAAGAACTCTTCCATTGGCGTGAAATGCTTGAAGCGA
AAGGAAAGAAAGTTCGTAAATGGCATATTTTGTCGGCTGTAAATCGAAGC
TTTGACGATGAATACTGAAGCGCTGATTCCATGTACGATTTATCGGATAC
TACAAGTGTCGGTTCACCTGGTTTTGGTTCCCCGATTTTGGGTGGTTCCC
AATCCTCATTGACTGGACATTCAAGTGCACCAGAGCTTCTAATTTCTCTG
TGTTATGCATCTTTGACGGGCCGTTTGACAGTTGAGGTGCTGAAAGCAAG
TAATCTCCGACATTTACAACTACAAAGGGCACCAGTTCCAGTCCCTGCGA
TTGTATTTCTGTGCGTATTATGTGGCTGTATTATCATACTATGCATCGTT
TATCAACTCCTAAAACGTGATATGTGCTGTAACTTCGAAGCGGGTCTTGG
AGAAATCGAGAAAGCCACAAAGAATGGATACACAGAGCTCACCGAGCATT
TTTACGACTTTGATGAAACCGAAGGCCCGACTACGGATGATGACCCTCAG
AGTCGGAAATCAAGCCGTCGTAGTAGCCGACGTAGTAGTTACGATTTGAC
GGCGACAAGTCAATCAGGGGGTGAGATGGGAGTCGATTCTTCATCGATAT
ATGGCGGAGAATCGATTGATATTCGAATTAGTGGACCCGAAGATGAAGCC
CAGAGACATGCTGGCAAAATTCTATTCGAATTCAATTATACCCCTGAAAC
ACAAAAGTTGTCTGTGACGGTTATTAAGGCTGCCGACGTCCCGTCTAAAG
CACGTGGAGGATCGTCCGCCATTCAAGTACGGTTGGTACTTCTACCGACT
AAAGGACAACGGTTCAAAACAAAAGTTCGACCGGCTTCTAACCCGGTTTT
TAATGAGACATTTACATTTATGTATGTTGATCAGATAGCCATCAGTCAAT
TCCAAATTCGAATTCGTATTTACGGTCAGGAGCGTTATAACCAAGGACGA
TTGATCGGTGAGCTGATACAACCACTGAAAGAATTGAATTTATTTAATCC
AGCTACGGAAGAAAATCAAGTATGGAAAACGTTAGCACCCAGAGCTCTAA
CGATGATCCTTCACGCCACTACACCACCGCCCCCACCACCTGAAGACACT
TACGTCAAAGTTTCAATGTTCAACGCGGTGGGACAACAACTGGCCAAAAG
TAAAACTTCAATCCGTCGTTTAATGTTCGAACCCGAATACAATGAAACTT
TCGTTTTCCAAATTATCGAGTTCGATTTAGCAAGTGTCAGCCTCATGTTT
TCAATCATGAATATCAAGAAAATGCGACGAAAAGAAATTCTGGGTTGGTT
TTCTATTGGTAAAGATAACACTTCGGAAGAAGAACTCTTCCATTGGCGTG
AAATGCTTGAAGCGAAAGGAAAGAAAGTTCGTAAATGGCATATTTTGTCG
GCTGTAAATCGAAGCTTTGACGATGAATACTGAAGCGCTGATTCCATGTA
CGATTTATCGGATACTACAAGTGTCGGTTCACCTGGTTTTGGTTCCCCGA
TTTTGGGTGGTTCCCAATCCTCATTGACTGGACATTCAAGTGCACCAGAG
CTTCTAATTTCTCTGTGTTATGCATCTTTGACGGGCCGTTTGACAGTTGA
GGTGCTGAAAGCAAGTAATCTCCGACATTTACAACTACAAAGGGCACCAG
TTCCAGTCCCTGCGATTGTATTTCTGTGCGTATTATGTGGCTGTATTATC
ATACTATGCATCGTTTATCAACTCCTAAAACGTGATATGTGCTGTAACTT
CGAAGCGGGTCTTGGAGAAATCGAGAAAGCCACAAAGAATGGATACACAG
AGCTCACCGAGCATTTTTACGACTTTGATGAAACCGAAGGCCCGACTACG
GATGATGACCCTCAGAGTCGGAAATCAAGCCGTCGTAGTAGCCGACGTAG
TAGTTACGATTTGACGGCGACAAGTCAATCAGGGGGTGAGATGGGAGTCG
ATTCTTCATCGATATATGGCGGAGAATCGATTGATATTCGAATTAGTGGA
CCCGAAGATGAAGCCCAGAGACATGCTGGCAAAATTCTATTCGAATTCAA
TTATACCCCTGAAACACAAAAGTTGTCTGTGACGGTTATTAAGGCTGCCG
ACGTCCCGTCTAAAGCACGTGGAGGATCGTCCGCCATTCAAGTACGGTTG
GTACTTCTACCGACTAAAGGACAACGGTTCAAAACAAAAGTTCGACCGGC
TTCTAACCCGGTTTTTAATGAGACATTTACATTTATGTATGTTGATCAGA
TAGCCATCAGTCAATTCCAAATTCGAATTCGTATTTACGGTCAGGAGCGT
TATAACCAAGGACGATTGATCGGTGAGCTGATACAACCACTGAAAGAATT
GAATTTATTTAATCCAGCTACGGAAGAAAATCAAGTATGGAAAACGTTAG
CACCCAGAGCTCTAACGATGATCCTTCACGCCACTACACCACCGCCCCCA
CCACCTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000865XLOC_000865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001657-exon-sc0000011-1575043694:373339..373391TCONS_00001657-exon-sc0000011-1575043694:373339..373391Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1575043694:373055..373133TCONS_00001657-exon-sc0000011-1575043694:373055..373133Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1575043694:372251..372348TCONS_00001657-exon-sc0000011-1575043694:372251..372348Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1575043694:366924..367690TCONS_00001657-exon-sc0000011-1575043694:366924..367690Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1575043694:366379..366595TCONS_00001657-exon-sc0000011-1575043694:366379..366595Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1575043694:362890..363767TCONS_00001657-exon-sc0000011-1575043694:362890..363767Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:373339..373391TCONS_00001657-exon-sc0000011-1510915933:373339..373391Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:373055..373133TCONS_00001657-exon-sc0000011-1510915933:373055..373133Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:372251..372348TCONS_00001657-exon-sc0000011-1510915933:372251..372348Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:366924..367690TCONS_00001657-exon-sc0000011-1510915933:366924..367690Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:366379..366595TCONS_00001657-exon-sc0000011-1510915933:366379..366595Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:362890..363767TCONS_00001657-exon-sc0000011-1510915933:362890..363767Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:373339..373391TCONS_00001657-exon-sc0000011-1491911889:373339..373391Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:373055..373133TCONS_00001657-exon-sc0000011-1491911889:373055..373133Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:372251..372348TCONS_00001657-exon-sc0000011-1491911889:372251..372348Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:366924..367690TCONS_00001657-exon-sc0000011-1491911889:366924..367690Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:366379..366595TCONS_00001657-exon-sc0000011-1491911889:366379..366595Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:362890..363767TCONS_00001657-exon-sc0000011-1491911889:362890..363767Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001657-proteinTCONS_00001657-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:362890..373391 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.10558	0.294537	0.222946	0.135064	0.915715	0.282234	26.4369	27.6093	9.73027	10.1768	8.27062	6.6899	2.42697	1.79888	0.130329	0.297497	5.43838	4.61301	1.45255	3.33354	10.9525	9.92309	3.26432	4.50731	4.20303	6.64292	4.90016	5.07763	0.115072	0.231453
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Blast
[Close]
BLAST of TCONS_00001657 vs. Swiss-Prot (Human)
Match: SYT14 (Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 7.851e-68
Identity = 133/344 (38.66%), Postives = 197/344 (57.27%), Query Frame = 2 
Query:  485 YDLTATSQSGGEMGVDSSSIYGGESIDIRISGPEDEAQRHAGKILFEFNYTPETQKLSVTVIKAADVPSKARGGSSAIQVRLVLLPTKGQRFKTKVRPASNPVFNETFTFMYVDQIAISQFQIRIRIYGQERYNQGRLIGELIQPLKELNLFNPATEENQVWKTLAPRALTSADSMYDLSDTTSVGSPGFGSPILGGSQSSLTGHSSAPELLISLCYASLTGRLTVEVLKASNLRHLQLQRAPDTYVKVSMFNAVGQQLAKSKTSIRRLMFEPEYNETFVFQIIEFDLASVSLMFSIMNIKKMRRKEILGWFSIGKDNTSEEELFHWREMLEAKGKKVRKWHIL 1516
            Y+    S S   +  +  S  G  S   +   PE EA+   G +   F+Y  + QKL VTV    D+P+  R G ++ QV LVLLP K QR KT ++    PVF ETF F +V+   I  + +R R+YG  R  + +++GE I  L +LNL    +    +  +       S  S+ ++S + S  S           QS    H S PE+LI L Y + TGRL+ EV+K S+ ++L   R P+TYVK+++ N++GQ+++K KTSIRR    P Y ETFVFQ+  F L+ V+L+ S+ N + M+RKE++GW S+G +++ EEEL HW EM E+KG++V +WH L
Sbjct:  223 YEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAK--YGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSS----------CQS--LEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLTLLNSMGQEMSKCKTSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVYNKRSMKRKEMIGWISLGLNSSGEEELNHWTEMKESKGQQVCRWHAL 552
The following BLAST results are available for this feature:
BLAST of TCONS_00001657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT147.851e-6838.66Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=... [more]
back to top