TCONS_00001657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001657
Unique NameTCONS_00001657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2092

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001657 ID=TCONS_00001657|Name=TCONS_00001657|organism=Clytia hemisphaerica|type=transcript|length=2092bp
GTTATGCTGTCAAATTGTTagaagaaattttcacaagaTGCTTATGAAGT
GTTATACAGTTCATGTTGATTGAGTGTTCAAAGAAGTTCTGAAAGATGAC
CTTGATGACTTTTGATGCCGATGACGTTGAAGCTATCAATGTTGGTCAAG
ATAAACATACCAGTTTCCATGACGATAATTGAGAAGAATGATCCTTCACG
CCACTACACCACCGCCCCCACCACCTGAAgTTCCAGTCCCTGCGATTGTA
TTTCTGTGCGTATTATGTGGCTGTATTATCATACTATGCATCGTTTATCA
ACTCCTAAAACGTGATATGTGCTGTAACTTCGAAGCGGGTCTTGGAGAAA
TCGAGAAAGCCACAAAGAATGGATACACAGAGCTCACCGAGCATTTTTAC
GACTTTGATGAAACCGAAGGCCCGACTACGGATGATGACCCTCAGAGTCG
GAAATCAAGCCGTCGTAGTAGCCGACGTAGTAGTTACGATTTGACGGCGA
CAAGTCAATCAGGGGGTGAGATGGGAGTCGATTCTTCATCGATATATGGC
GGAGAATCGATTGATATTCGAATTAGTGGACCCGAAGATGAAGCCCAGAG
ACATGCTGGCAAAATTCTATTCGAATTCAATTATACCCCTGAAACACAAA
AGTTGTCTGTGACGGTTATTAAGGCTGCCGACGTCCCGTCTAAAGCACGT
GGAGGATCGTCCGCCATTCAAGTACGGTTGGTACTTCTACCGACTAAAGG
ACAACGGTTCAAAACAAAAGTTCGACCGGCTTCTAACCCGGTTTTTAATG
AGACATTTACATTTATGTATGTTGATCAGATAGCCATCAGTCAATTCCAA
ATTCGAATTCGTATTTACGGTCAGGAGCGTTATAACCAAGGACGATTGAT
CGGTGAGCTGATACAACCACTGAAAGAATTGAATTTATTTAATCCAGCTA
CGGAAGAAAATCAAGTATGGAAAACGTTAGCACCCAGAGCTCTAACGAGC
GCTGATTCCATGTACGATTTATCGGATACTACAAGTGTCGGTTCACCTGG
TTTTGGTTCCCCGATTTTGGGTGGTTCCCAATCCTCATTGACTGGACATT
CAAGTGCACCAGAGCTTCTAATTTCTCTGTGTTATGCATCTTTGACGGGC
CGTTTGACAGTTGAGGTGCTGAAAGCAAGTAATCTCCGACATTTACAACT
ACAAAGGGCACCAGACACTTACGTCAAAGTTTCAATGTTCAACGCGGTGG
GACAACAACTGGCCAAAAGTAAAACTTCAATCCGTCGTTTAATGTTCGAA
CCCGAATACAATGAAACTTTCGTTTTCCAAATTATCGAGTTCGATTTAGC
AAGTGTCAGCCTCATGTTTTcaatcatgaatatcaagaaaatGCGACGAA
AAGAAATTCTGGGTTGGTTTTCTATTGGTAAAGATAACACTTCGGAAGAA
GAACTCTTCCATTGGCGTGAAATGCTTGAAGCGAAAGGAAAGAAAGTTCG
TAAATGGCATATTTTGTCGGCTGTAAATCGAAGCTTTGACGATGAATACT
GAAGTGGGAAATCAAAGAGTGCAGACAAAATTATCTTCCTTTTACACAAC
TCGAGACAAGCATTTAGATGCAGTATTTTAAGATTTGTACAGTTAAGTAA
CCCATTCCAGATCTTGACGTGGTattgtacaaaaaaaaatattggcaATA
AGAATAATATCCTAGACTTTCAACCATATATTAATCTACAAATTTCTTCA
TTAAATTGGCTACGTAGAAATTCTGGTTAATATCTGTCTGGTTGATATAA
GAGGTATTATTAAGTCGAAGCAAGACTTTATCACACctccaaaaaaagaa
ataacCTCCTTTCAAGAGTCACGATTCTCCAAAAACTTTGACACAAATTT
GAACGGATtggattaaatttttattttgagattaaacaaattgaaagatt
gtaaaaattgttGTTATATTACTGTATTTAAAAATTGACTAATATTTTAT
TTTGGGCTTACTTTTTCTCATTAGATAGGTCAAGATAAAAAACTTAAACC
ATGGATAAGTTAGATctcattttcctttttaaaattGAGGAA
Run BLAST on NCBI

protein sequence of TCONS_00001657-protein

>TCONS_00001657-protein ID=TCONS_00001657-protein|Name=TCONS_00001657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MILHATTPPPPPPEVPVPAIVFLCVLCGCIIILCIVYQLLKRDMCCNFEA
GLGEIEKATKNGYTELTEHFYDFDETEGPTTDDDPQSRKSSRRSSRRSSY
DLTATSQSGGEMGVDSSSIYGGESIDIRISGPEDEAQRHAGKILFEFNYT
PETQKLSVTVIKAADVPSKARGGSSAIQVRLVLLPTKGQRFKTKVRPASN
PVFNETFTFMYVDQIAISQFQIRIRIYGQERYNQGRLIGELIQPLKELNL
FNPATEENQVWKTLAPRALTSADSMYDLSDTTSVGSPGFGSPILGGSQSS
LTGHSSAPELLISLCYASLTGRLTVEVLKASNLRHLQLQRAPDTYVKVSM
FNAVGQQLAKSKTSIRRLMFEPEYNETFVFQIIEFDLASVSLMFSIMNIK
KMRRKEILGWFSIGKDNTSEEELFHWREMLEAKGKKVRKWHILSAVNRSF
DDEY
Run BLAST on NCBI

transcript from alignment at sc0000011:362890..373391-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001657 ID=TCONS_00001657|Name=TCONS_00001657|organism=Clytia hemisphaerica|type=transcript|length=10502bp|location=Sequence derived from alignment at sc0000011:362890..373391- (Clytia hemisphaerica)
GTTATGCTGTCAAATTGTTAGAAGAAATTTTCACAAGATGCTTATGAAGT GTTGTAAGCTCCCTTTTTCATTTTTAAAGTTTATGAAACACTCTTTTTTT TAATCATAGACTTTATATAATACTGGAAAATCTACTGCAGATTCGCACGG AAATTGTATCAGTCCTTGAATCTAAAATCTATCTACTTTGACGTCAAGGG TCATTTTACGTCATTTTGCATTGATGCTCACCTAATTCAATGGTATTCCT CTTTTTAGATACAGTTCATGTTGATTGAGTGTTCAAAGAAGTTCTGAAAG ATGACCTTGATGACTTTTGATGCCGATGACGTTGAAGGTTTGCCTTTAAA ATGTTTAGTTATCCTGCTTCTAAAGTTACCAGTATCAATACTGGTAAATG TGTAAACTAAGAATTACAATACAGCGTACTTTAGATGAGAAACTCATCAA TCCCTAAGTGAGGATTTAGAGTAAGGAACTCTGAAGTTAGAATTGCCATA AAGGTAGAAAAGTGATCTTATAAAAGGTTGTCGAGAACTATAAATTCTAC TGAGGGAGGAGTGTTTTTGAAATGTCCTTCGTCCAGTGGAATTCCAACAA CTTGATATCGTCTCTTCTTTCCCACTGTTTATTGACAATAAGTGAAAAAG AAAAAGAAAAGTGATGAAAAAAAAGTAAAAGGGAATGAGTCTAATCATCA CCCAACCATCCAACCAACAGAAAAGGAATGTGATTAAAAATAAATAACTT TATGAAAGCATAAGACAATAGAAACAATAGGGATTGAAAGAAAAAAGGGG GTCTTTTGAAATAAGAGAATTATTTTAAGTATATTTTCTTGCTGTTTTTC TTTCATCCTCTTTTCTTTTAGATTTTATTTTCTTCATTTTTTTTCACTTT AAAACTCACTTTATCTTGACAGTTGTGTTCGAAGGATCGACTAGAAGGAA AATTTTTAGACTTTTCATATTTTTGACTGAATTGCTATGGTCAAAATTGA CTCAGTAGTGGTAGATTATTGTTATTTATGATTTCGTTCACAGCTATCAA TGTTGGTCAAGATAAACATACCAGTTTCCATGACGATAATTGAGAAGAAT GATCCTTCACGCCACTACACCACCGCCCCCACCACCTGAAGGTATTTCTT TTTGATTTGCTCATTGCTCAGTTCACGATTTATTAAAATGCTCATACCCG GATTCTCATATTGTTCAATTAAGGTCAATGTTGTCTCTGCGCTACTGGAG GATTGGGTTCCAGTGAACCAAGGTTGAATGACGTCAAAATGTTCATACAG TTACTCTTAGGTTCCAAATAAATGACCCCCCCGCTTGTTAATTGTTCGAA AATCTTCCAACCCCTAGACCTTATTAGGACCCCCTGAAGCCCCCCTGTTA ATTAATTTCTGAGCATATTCTCAGTTTTCAAAGAGAAGGTCCCTCATTTT GCTCTAAATAGCCTGATTTTAGCCTAGATTTAAAACATTTTTGGTTTTTC AGAAGTACAAATTCCAACCTCCCAGCAATTAGGTCCCCCTCATTTATTAA AATTTTGAAAATTTTCCAACCCAACAGGGGGGACTTTATTCGAACCCCCT CCTGTTTATTTTGAACCTAATAGTAACTCGCTAGTTCGAATACCTACTTT TTGCACAGGGGGCTGATATGTGTATTCAAGACAGTAACATGACCAGCTAG AACTTTTTGGTTTAAAATTATATTCTTTAAATTTGGGATAAATATGACTT GCAATCCTTTGTTCACTTTCAAAGCTCCAGTTCTTGTTAGATGTGGAACA TCTTGAGAAATAATTGAAATTGATATCAGAATTCTTATGCATATTATTTA TATCGGCCAGGGATTAAGTCGAAGAAATACTCACAGGCCAGCAATGGAAT AGCATATCGAAAGTGCTAGATGTGCCATTTTCTGAATCATCATTAATTTA GGCTCCAAATGAAATGGAAAAGACTTAGGTGCATGACCTATCTTTATCTT TATTTATTTATAAGTTATCGCTGACTTTTCCCATTTTTCCTTAAAATTAC TCTATGAAAAGACTTTCATTTTTGACAGCAAGGACGACAAAGTGGTAATG GTTAACAGTGTAAGAGCGCAAAGAGTAATTTTTTTTAAATTTTAAACGGT TACAGATGCTTAAAACTCATTCGAGGCACTATATAGACTATATAGCTGCC ATAAAGACGTCATTTTAGAAGAATCAAAGATGATCGCCGTAATTAACGAA CTTGATCACTCTAAAAAGAGTGCAAAATGTTATTCAAACCTACTTTAATG AGATAAATTTTCGCGGGGATTAAATTTTGCGGTTGAGCTCATCGAGTTCA TATATTGCACTATTGGGAGTTAATACTTTCACGGCTTTGTGCTTTTTTAC GCCAAATTATGCAAATTGGTTATCGTATATACGCATTATTGGCGCTTCTT TGATGTCAATACACATTTTAGAAGTAGTTATTTGACATTTTTCGAGTTTT TCTCAGAAAATATTTCACGGATGAGGCCTTTCCAAACTTCCATTGGGACT TAATTTCGCGGATGACACCCAACCTGTGAAATTTAATCCCCGCGAAAATT TCTCCTGGCCACTTTATTTAAGTTATAAACCGAGTTATTTTTAACCGGTC CGTCAGAAAAGGGAGAAGGTTAAGTTAAAGTGTACAGGTTACTTCAATTA TTTAATAAAATTTTAAAAAATACAAAAAGTTCATTCAATATTTTGAAAAG TTAGAAGCCATCTGTTTTTCATGGAAACTTTTTATAACTAATAAAGTGAT CAAACTGTGGCTCAAATATCATGAACATTCGAAGATAATAAAAGTCACAA CACGCTCAGCGAGATAGCTCTAATTTATGAATGATTAAAAGCATGTTATG TACTCTTTCATTAAGCTTTTAAACACCTTTACCATTTGTTTAAACGTATA AACCCGTCTTGCTACTTAATAAAGAGGCGTCTGATGAGCTTTTCAAGTTT CAATATACGAACCTGTCTCAACGGCTGTGGGAATTCCCCCCGTGGAAATT TAATTCGGGAATAGATAAAGAGATTTATTCAAACGGGAAGCAAAACACGC TGCTCTAAATAATGATGCAAATTCAGGTGACGGAAAACTTTCACAATATT AAATTTTAAATTCATGTTAGAAATTCTGTATTTTCTTAATCACTAGGGGT TTTTTCAGTCCTAATCTAGAGTTTAATATGCCTCAGTAGGTGTGGATCCC ACTTTGGTCCTTCTAGCAGGTTTTCAATCGGGTGATTCCCTTTTTTTTAT CCAAGTTATTGATTATTTTTTATCTTGAAGAGCTATGACCATGAATGAGT TGTTGTTCTCCATCATAAAACAAACTTCCAGGCTACCTCTCCTCTCCAAA AGGGTTAACTCAATAAACTTTCTCATTAATTTCAACATGAAGATGCAAAT TCAAAATGACTTTTTGTTTACCGTGAACGTTGGCATATAAAAGTCTTGAG TACAAAAAGATTAAGTCTAAAACAACGATCAAGAACTGTTTTTTAAAAAC TTGAGGTTTGGGTCTGCTAAAACTTCAGCAAATTTCAGAAATCACTGAGG GAAATACTTGCAATACTGGTTTTGAAATTTTAAATGAAATTTACATTTCG ATAAAAAGAAAGAAGAGCCGCGGCTAAGCTGAATTCATTAGCACTTCTAA AAGAAGTGAGTAACGCCAACTATTGCTAATTCGAAATTAATTTTGCATAT ATCTGAAATCTCTTATCAGCGTCCAAACCCCACCTTTTTTTCAATCTGAA AACCTTCAACCCCTCCCAAAATCCAGGGAATCCAGGGCAGGTGCCCACTA TTTTGTTGCAATGAAACAAATTTGAATTCCGTTTTTTTCTAAATTTTCAA CGCAATAGAGAAACATTTAACGATTACTAAGGCGAAGTTCCGTTCAAATT TTCTGATTCTTTGGCTTCTTTGTATCACAGCTTTTAGTGGATTTTAAACT AGAAGAGGCGTGATTGGGACCTTTTTCTTGCGTGATGGCGTGATTAGAGA TTTTTTTGGCGTGATGGCGTGATCAAGATTTTGGCGTGATCAAGATTTTG GCGTGATGCGTGATAGGGCAAAAATTTGAGGCGTGATGCGTGATATGGGC TATTTTTCGCTATTTTTTGCGTGATGACAAATTTTAGCGATTTTCGTGAT GCGTGATGGAGAAAATTTTTTTGCGTGATGGCGTGATTAGAGATTTTTTT GGCGTGATGGCGTGATCAAGCTTTTGGCGTGATCAAGATTTTGGCGTGAT GCGTGATAGGGCAAAAATTTGAGGCGTGATGCGTGATATGGGCTATTTTT CGCTATTTTTTGCGTGATGACAAATTTTAGCGATTTTCGTGATGCGGGAT GGAGAAAATTTTTTTGCGTAATGGCGTGATTAGGGGTGCCGCGGGGGGGG GGGGGGCTCTAGAAGAGGTGAAGAAATAGGCTACATTTTGCTGGGTTTGA TTTTTTGATAGAGTAAAAAACACCGGGAGGAGGTGGATTTAATCAACCGG GGTTAGCAAAAATTTAACAAGGAATGTTGATATTGCACACTCACGGACAA AAGGTTGTAGACTTTTCAAAAATGCATGAAAATTTTCAAGCAAGCAAGCT CTGAAAACCAATTTTTACCAGAGCCAATGTTTCAGTCTTTGAAAGTCCAA AAATCACAAGAACTACTAGCAAGCTTATAGGTGTGTTTTCTATTCCAAAA AGATTGGACCAAAACTGTTTGTTTTCTTCTATCTTCAGTGATCTTTAGAT TAAAGTTTGTGATAATTAAGTTGGAGTCTCTGTGAGAACTTTAAACCAGA TTTACTCTATCATTTCTATGAAATGTGTAGACTGGAAAGTCTCTATCATT TTCCACGCATGCGTAAAAACTAATGAATCTTTCGTTCTATATCTGGAGTA AATATTAAAAAGAAGGAAAAAAATATTTCAGGAAAAAATTATTATTTTAG CGATAGATACAACAACAAAAATTTAAGGTTGTAAATTCTTTTGTTTTTTT GTGCGTAAGGCAGATGTTTTCTATATATTTTCTCATTATATTTATAATTT ATCAAAATATAAAAGTGAAGGTTGAAGAAGGAAAAGAGAGAGAAGAAGAG CGAAAATTATCAAAATATGGGGTAGAGAACAAACGAAAAAATGGAGCAAA ATATAAAGGCCTTTTAGGGTTTTTTCATATTATTTTTCACTCTCTATCCT TTTACTCCCGTTCATTTTCTTCTTCTTTTTCTAATCAATTTTTCCTTTCT TTTTTTCTCATTGCTACACCAGTGAAAGGGATTTGGTATACTAGTTTTTT GCTGGACTGGAGAGTTGATGTGCCCGCAGAAGAAAAAATTTTTTCAGCGA AAAAAAAGGGAAAATGTAGCCCCTTGTTTAACTACGGTGAAAGATTTTAG CAGAACATTTCTGAGCTCTGCTTACTCGATATTGGAACCTGAAAAACTTA TTATGTAATGCCTGGTCACTAATATACTTTGGTTGATTTGTATTTTGCTG ACTCGGCATTTTACTTTTCTTGACAGTATGGAATGTAAGTTGAAATTGTG CTCTAAACTTTCTTTTCCGCCTTGAAGTTTTTATCCTTATATAATGATGT GGGTACAATGCTTCCCGTTCGAGTTTAACACCTTTTGTCTTTCTTTTCTA GTTCCAGTCCCTGCGATTGTATTTCTGTGCGTATTATGTGGCTGTATTAT CATACTATGCATCGTTTATCAACTCCTAAAACGTGATATGTGCTGTAACT TCGAAGCGGGTCTTGGAGAAATCGAGAAAGCCACAAAGAATGGATACACA GAGCTCACCGAGCATTTTTACGACTTTGATGAAACCGAAGGCCCGACTAC GGATGATGACCCTCAGAGTCGGAAATCAAGCCGTCGTAGTAGCCGACGTA GTAGTTACGATTTGACGGCGACAAGTCAATCAGGGGGTGAGATGGGAGTC GATTCTTCATCGATATATGGCGGAGAATCGATTGATATTCGAATTAGTGG ACCCGAAGATGAAGCCCAGAGACATGCTGGCAAAATTCTATTCGAATTCA ATTATACCCCTGAAACACAAAAGTTGTCTGTGACGGTTATTAAGGCTGCC GACGTCCCGTCTAAAGCACGTGGAGGATCGTCCGCCATTCAAGTACGGTT GGTACTTCTACCGACTAAAGGACAACGGTTCAAAACAAAAGTTCGACCGG CTTCTAACCCGGTTTTTAATGAGACATTTACATTTATGTATGTTGATCAG ATAGCCATCAGTCAATTCCAAATTCGAATTCGTATTTACGGTCAGGAGCG TTATAACCAAGGACGATTGATCGGTGAGCTGATACAACCACTGAAAGAAT TGAATTTATTTAATCCAGCTACGGAAGAAAATCAAGTATGGAAAACGTTA GCACCCAGAGCTCTAACGGTGAGTATTCAAACTTCATCTAGTAAGAGGGC GTTCTTTAGGATCTTACTTATAATTGTCTAATGTAAAATATTTTAAAAAC ACTACTCTTTAATTTTTCGTAGAAGGGCATAGTGGTCGTAGTACTTGAGA TATTGGGGTGAATTTGTGGTTTCATATAGTTTATTTTCGCTTTTTTGACA TAAAGTAATAATAGGAGTTGTTAAATTGACATTATTTTGAACCCGTACAA TTTGGTACAAGAGTATTATGATGGCTTTTTACACGATTTTGCATGATTGA AGAATCATTTTCAGATTGTGTGTTTGATGTATAATATACTTTTCAGAGCG CTGATTCCATGTACGATTTATCGGATACTACAAGTGTCGGTTCACCTGGT TTTGGTTCCCCGATTTTGGGTGGTTCCCAATCCTCATTGACTGGACATTC AAGTGCACCAGAGCTTCTAATTTCTCTGTGTTATGCATCTTTGACGGGCC GTTTGACAGTTGAGGTGCTGAAAGCAAGTAATCTCCGACATTTACAACTA CAAAGGGCACCAGGTGTGTATTATGTTTTATTCTTTTATTTTATTTGTTC TGACAATCCTCAAAATTCTACGCTTAGAATATTTTGACTCTGGATGGCTG TGAATTTTCAGATGGTCGATAAAACAATTCTAGTTTATTAAAAGATAAGC TAAAATCTATAATATCGTGATCGTATCAACTAATATCTTAACAAATATAA CTGGAACGTTTGAAAAAGTTTACATAAAATCGTATGTTTTAGAATTCATA ATATTCACGACATAATGTTTCACGGATACCCCCAAAACAACCCGGGTGTC TGTCACACTAGTTTCATTTTTAAAAATTCAAAACTAGTGTCAAACACTCG GGCTTTTTGGGGGGCATCCGTATAAAAGATTACTTTATGACCAGTTTGCA AAGTATGGCAAGGCTGCACTCGAGGAAAAATTCGGAAATACCAAGTTCTG CACTGGAAGAACGCACCTGATAAATTTTGGTCCGGACAGGGTGCACCTAG ATACCTCGGAAATTCGTCCAAAAAGGCAAAAATTGCTAAAATTAGCTGCA CTTGAAGAAAAAATAGCTGAACTTTGCACTTGAGGTTAAAAAAACGTTTG AATTTGCACCTGCACTCAACTTTTTCCGAGTTGTGCACTCGAGATCTCGA GCAAACTTGTCACACTCTGCAAATTGGCTTTATGAATACCACGAGTTCGG TCGAGTGACTCGCAAAATACATTATTGTAAAAACCCACAATACTCCCACT AACCGGTTTGGACTCTTTCCTAACCCATCGTCATAAAAATTTAGATTCGT ACGTCAAGATTGAGGTATTATCGGCACGTGGCAAGCGCGTTGCAAAAAGT AAAACTACCATCCGACGATCTATGACAGATCCCGAATTTAACGAATCGTT CGTCTTTCAAATGTCAGAGTCGGATTTGCAGGAAGTGACGTTAGTCTTTT CCGTCATTTGTATTTCGAAGACACGAAAGAAGAAAGATGTTTTGGGTTGG TTTACTATGGGTAAAGAAGCCAATAGTTTGGATGAGATCGACCATTGGGA AGAAATGATCGCCCACAAAGAACAGAAATCAACGCACTATCATGTTTTAC TACAAGCTTGAATCGATTGATTCAACATAATTTATTCGGTAGAAAATAAT ATTGTTGTTTTCTTCATGGAGCTATGTCAGTCCATATTGTGACTGATACA TTCGACTTGATTCATATTTTTTTCAACGTTGTAATGTTGACTTGAAAAAC AATCTGTGATGAATTTCGGAGATTTTGGAATCAAATTTGTACGAGTTTAC TAAATCAAAATTCAATGTTTGTATTTTTGTGAAAAGCATATATTTGACCC ATTGACCCAAACGGTATCATTTTACCCAGATTGACTTATATGAAATGTAT ATATTGATTGGTTTGTAGGAAAAAGCACGATGCTTGTTTTCTTTGTGGGG TTATTGAAATGTCTGGGACGGATGAATCGAGGCCAATTTACCATGGAATT ATTATTCATAATCATCTGATGCACACATATTGAGCTCGGCCAAAATCATA CAGTGGTAGTAGATATTTTGAAAATATTTTGGTATTTCTAGATACTTGTT GATTTGCAAGGAAGAAATCATATCGTTGATGAGATATTGTTTTTGTTTTA GAAAACGCTTTAGATGTTTTGTTTTTCTCATTATTTTATTTTGGGCGTTT TGGTTTACATTGAAAATCTGTTGGAGAGAAGATATGACAAAAATACTATT TTGGCTATAGTTTAACCACCCTCCCTAACTTAAGGCAAATATTATTTGCT TGGATCCAAAAGTATATTTTAAAACTTTATTTTTACCATTAATTTTATCA TATCACTCCAAATGTAATATATTATATTGTTAGAAAAGAAATATTTTTAG GTAATTTAAAACAAATTTATCGGAAATATTTACAAAAGGCGTTTTGAATT ATTTTATTCGTTTTAAAATATTTTGTCGCAAAAATTTTGGGCCTTGTTCC CATGTTAGTTTAAGCAATTATTTTCAATATTATTTAAAAAAGAATCCTGT CTGAAAAAGAGGCCATTAACGTACATTCGTTGTATTGAGTGAGTTGAATT GAATTGATATCACTGTAACTTTTGGGCCACGGTGGATTTCTTTATTTCCT TCGAAAATTACTATCATCTTGAAAGAAGGCTCTTATAATAGACCTATTCA TAAATTACGTCACGAACATCACTTGCCTCGTATTCAAACAATTACCATGG TGATTATGTCCCTTGAGACATAAAATGATTTTTTTATAAATAGAAGGAGT TTTTCTAAAATCCGTTAATCACCATGGCAATAATTTCAAAACGAGGCAAG TGATGTTCATAACGTAATTTATGAAAAGGTCTATTTCCTCCCAAAGGTCT GGGAAGACGACTTTTGCAGATGACTTTTTGCAAAATCAATGCACCAGTTA GTCACTGCAGTTTACAGTATAGTGCACTTAATTCATGTTTAGTTGGTACA CAACGTTGTTTCAACGTCAATCTAACGTTATTTTATGACTATTTGGGGGC TATGGTGAATACTTGAAAAAGACTTGATTCAGTGTTGCTTATTTTTGTTT TTTCTTTGTTTTTTTTCACTTCAGACACTTACGTCAAAGTTTCAATGTTC AACGCGGTGGGACAACAACTGGCCAAAAGTAAAACTTCAATCCGTCGTTT AATGTTCGAACCCGAATACAATGAAACTTTCGTTTTCCAAATTATCGAGT TCGATTTAGCAAGTGTCAGCCTCATGTTTTCAATCATGAATATCAAGAAA ATGCGACGAAAAGAAATTCTGGGTTGGTTTTCTATTGGTAAAGATAACAC TTCGGAAGAAGAACTCTTCCATTGGCGTGAAATGCTTGAAGCGAAAGGAA AGAAAGTTCGTAAATGGCATATTTTGTCGGCTGTAAATCGAAGCTTTGAC GATGAATACTGAAGTGGGAAATCAAAGAGTGCAGACAAAATTATCTTCCT TTTACACAACTCGAGACAAGCATTTAGATGCAGTATTTTAAGATTTGTAC AGTTAAGTAACCCATTCCAGATCTTGACGTGGTATTGTACAAAAAAAAAT ATTGGCAATAAGAATAATATCCTAGACTTTCAACCATATATTAATCTACA AATTTCTTCATTAAATTGGCTACGTAGAAATTCTGGTTAATATCTGTCTG GTTGATATAAGAGGTATTATTAAGTCGAAGCAAGACTTTATCACACCTCC AAAAAAAGAAATAACCTCCTTTCAAGAGTCACGATTCTCCAAAAACTTTG ACACAAATTTGAACGGATTGGATTAAATTTTTATTTTGAGATTAAACAAA TTGAAAGATTGTAAAAATTGTTGTTATATTACTGTATTTAAAAATTGACT AATATTTTATTTTGGGCTTACTTTTTCTCATTAGATAGGTCAAGATAAAA AACTTAAACCATGGATAAGTTAGATCTCATTTTCCTTTTTAAAATTGAGG AA

Coding sequence (CDS) from alignment at sc0000011:362890..373391-

>TCONS_00001657 ID=TCONS_00001657|Name=TCONS_00001657|organism=Clytia hemisphaerica|type=CDS|length=5460bp|location=Sequence derived from alignment at sc0000011:362890..373391- (Clytia hemisphaerica)
ACACTTACGTCAAAGTTTCAATGTTCAACGCGGTGGGACAACAACTGGCC
AAAAGTAAAACTTCAATCCGTCGTTTAATGTTCGAACCCGAATACAATGA
AACTTTCGTTTTCCAAATTATCGAGTTCGATTTAGCAAGTGTCAGCCTCA
TGTTTTCAATCATGAATATCAAGAAAATGCGACGAAAAGAAATTCTGGGT
TGGTTTTCTATTGGTAAAGATAACACTTCGGAAGAAGAACTCTTCCATTG
GCGTGAAATGCTTGAAGCGAAAGGAAAGAAAGTTCGTAAATGGCATATTT
TGTCGGCTGTAAATCGAAGCTTTGACGATGAATACTGAAGCGCTGATTCC
ATGTACGATTTATCGGATACTACAAGTGTCGGTTCACCTGGTTTTGGTTC
CCCGATTTTGGGTGGTTCCCAATCCTCATTGACTGGACATTCAAGTGCAC
CAGAGCTTCTAATTTCTCTGTGTTATGCATCTTTGACGGGCCGTTTGACA
GTTGAGGTGCTGAAAGCAAGTAATCTCCGACATTTACAACTACAAAGGGC
ACCAGTTCCAGTCCCTGCGATTGTATTTCTGTGCGTATTATGTGGCTGTA
TTATCATACTATGCATCGTTTATCAACTCCTAAAACGTGATATGTGCTGT
AACTTCGAAGCGGGTCTTGGAGAAATCGAGAAAGCCACAAAGAATGGATA
CACAGAGCTCACCGAGCATTTTTACGACTTTGATGAAACCGAAGGCCCGA
CTACGGATGATGACCCTCAGAGTCGGAAATCAAGCCGTCGTAGTAGCCGA
CGTAGTAGTTACGATTTGACGGCGACAAGTCAATCAGGGGGTGAGATGGG
AGTCGATTCTTCATCGATATATGGCGGAGAATCGATTGATATTCGAATTA
GTGGACCCGAAGATGAAGCCCAGAGACATGCTGGCAAAATTCTATTCGAA
TTCAATTATACCCCTGAAACACAAAAGTTGTCTGTGACGGTTATTAAGGC
TGCCGACGTCCCGTCTAAAGCACGTGGAGGATCGTCCGCCATTCAAGTAC
GGTTGGTACTTCTACCGACTAAAGGACAACGGTTCAAAACAAAAGTTCGA
CCGGCTTCTAACCCGGTTTTTAATGAGACATTTACATTTATGTATGTTGA
TCAGATAGCCATCAGTCAATTCCAAATTCGAATTCGTATTTACGGTCAGG
AGCGTTATAACCAAGGACGATTGATCGGTGAGCTGATACAACCACTGAAA
GAATTGAATTTATTTAATCCAGCTACGGAAGAAAATCAAGTATGGAAAAC
GTTAGCACCCAGAGCTCTAACGATGATCCTTCACGCCACTACACCACCGC
CCCCACCACCTGAAGACACTTACGTCAAAGTTTCAATGTTCAACGCGGTG
GGACAACAACTGGCCAAAAGTAAAACTTCAATCCGTCGTTTAATGTTCGA
ACCCGAATACAATGAAACTTTCGTTTTCCAAATTATCGAGTTCGATTTAG
CAAGTGTCAGCCTCATGTTTTCAATCATGAATATCAAGAAAATGCGACGA
AAAGAAATTCTGGGTTGGTTTTCTATTGGTAAAGATAACACTTCGGAAGA
AGAACTCTTCCATTGGCGTGAAATGCTTGAAGCGAAAGGAAAGAAAGTTC
GTAAATGGCATATTTTGTCGGCTGTAAATCGAAGCTTTGACGATGAATAC
TGAAGCGCTGATTCCATGTACGATTTATCGGATACTACAAGTGTCGGTTC
ACCTGGTTTTGGTTCCCCGATTTTGGGTGGTTCCCAATCCTCATTGACTG
GACATTCAAGTGCACCAGAGCTTCTAATTTCTCTGTGTTATGCATCTTTG
ACGGGCCGTTTGACAGTTGAGGTGCTGAAAGCAAGTAATCTCCGACATTT
ACAACTACAAAGGGCACCAGTTCCAGTCCCTGCGATTGTATTTCTGTGCG
TATTATGTGGCTGTATTATCATACTATGCATCGTTTATCAACTCCTAAAA
CGTGATATGTGCTGTAACTTCGAAGCGGGTCTTGGAGAAATCGAGAAAGC
CACAAAGAATGGATACACAGAGCTCACCGAGCATTTTTACGACTTTGATG
AAACCGAAGGCCCGACTACGGATGATGACCCTCAGAGTCGGAAATCAAGC
CGTCGTAGTAGCCGACGTAGTAGTTACGATTTGACGGCGACAAGTCAATC
AGGGGGTGAGATGGGAGTCGATTCTTCATCGATATATGGCGGAGAATCGA
TTGATATTCGAATTAGTGGACCCGAAGATGAAGCCCAGAGACATGCTGGC
AAAATTCTATTCGAATTCAATTATACCCCTGAAACACAAAAGTTGTCTGT
GACGGTTATTAAGGCTGCCGACGTCCCGTCTAAAGCACGTGGAGGATCGT
CCGCCATTCAAGTACGGTTGGTACTTCTACCGACTAAAGGACAACGGTTC
AAAACAAAAGTTCGACCGGCTTCTAACCCGGTTTTTAATGAGACATTTAC
ATTTATGTATGTTGATCAGATAGCCATCAGTCAATTCCAAATTCGAATTC
GTATTTACGGTCAGGAGCGTTATAACCAAGGACGATTGATCGGTGAGCTG
ATACAACCACTGAAAGAATTGAATTTATTTAATCCAGCTACGGAAGAAAA
TCAAGTATGGAAAACGTTAGCACCCAGAGCTCTAACGATGATCCTTCACG
CCACTACACCACCGCCCCCACCACCTGAAGACACTTACGTCAAAGTTTCA
ATGTTCAACGCGGTGGGACAACAACTGGCCAAAAGTAAAACTTCAATCCG
TCGTTTAATGTTCGAACCCGAATACAATGAAACTTTCGTTTTCCAAATTA
TCGAGTTCGATTTAGCAAGTGTCAGCCTCATGTTTTCAATCATGAATATC
AAGAAAATGCGACGAAAAGAAATTCTGGGTTGGTTTTCTATTGGTAAAGA
TAACACTTCGGAAGAAGAACTCTTCCATTGGCGTGAAATGCTTGAAGCGA
AAGGAAAGAAAGTTCGTAAATGGCATATTTTGTCGGCTGTAAATCGAAGC
TTTGACGATGAATACTGAAGCGCTGATTCCATGTACGATTTATCGGATAC
TACAAGTGTCGGTTCACCTGGTTTTGGTTCCCCGATTTTGGGTGGTTCCC
AATCCTCATTGACTGGACATTCAAGTGCACCAGAGCTTCTAATTTCTCTG
TGTTATGCATCTTTGACGGGCCGTTTGACAGTTGAGGTGCTGAAAGCAAG
TAATCTCCGACATTTACAACTACAAAGGGCACCAGTTCCAGTCCCTGCGA
TTGTATTTCTGTGCGTATTATGTGGCTGTATTATCATACTATGCATCGTT
TATCAACTCCTAAAACGTGATATGTGCTGTAACTTCGAAGCGGGTCTTGG
AGAAATCGAGAAAGCCACAAAGAATGGATACACAGAGCTCACCGAGCATT
TTTACGACTTTGATGAAACCGAAGGCCCGACTACGGATGATGACCCTCAG
AGTCGGAAATCAAGCCGTCGTAGTAGCCGACGTAGTAGTTACGATTTGAC
GGCGACAAGTCAATCAGGGGGTGAGATGGGAGTCGATTCTTCATCGATAT
ATGGCGGAGAATCGATTGATATTCGAATTAGTGGACCCGAAGATGAAGCC
CAGAGACATGCTGGCAAAATTCTATTCGAATTCAATTATACCCCTGAAAC
ACAAAAGTTGTCTGTGACGGTTATTAAGGCTGCCGACGTCCCGTCTAAAG
CACGTGGAGGATCGTCCGCCATTCAAGTACGGTTGGTACTTCTACCGACT
AAAGGACAACGGTTCAAAACAAAAGTTCGACCGGCTTCTAACCCGGTTTT
TAATGAGACATTTACATTTATGTATGTTGATCAGATAGCCATCAGTCAAT
TCCAAATTCGAATTCGTATTTACGGTCAGGAGCGTTATAACCAAGGACGA
TTGATCGGTGAGCTGATACAACCACTGAAAGAATTGAATTTATTTAATCC
AGCTACGGAAGAAAATCAAGTATGGAAAACGTTAGCACCCAGAGCTCTAA
CGATGATCCTTCACGCCACTACACCACCGCCCCCACCACCTGAAGACACT
TACGTCAAAGTTTCAATGTTCAACGCGGTGGGACAACAACTGGCCAAAAG
TAAAACTTCAATCCGTCGTTTAATGTTCGAACCCGAATACAATGAAACTT
TCGTTTTCCAAATTATCGAGTTCGATTTAGCAAGTGTCAGCCTCATGTTT
TCAATCATGAATATCAAGAAAATGCGACGAAAAGAAATTCTGGGTTGGTT
TTCTATTGGTAAAGATAACACTTCGGAAGAAGAACTCTTCCATTGGCGTG
AAATGCTTGAAGCGAAAGGAAAGAAAGTTCGTAAATGGCATATTTTGTCG
GCTGTAAATCGAAGCTTTGACGATGAATACTGAAGCGCTGATTCCATGTA
CGATTTATCGGATACTACAAGTGTCGGTTCACCTGGTTTTGGTTCCCCGA
TTTTGGGTGGTTCCCAATCCTCATTGACTGGACATTCAAGTGCACCAGAG
CTTCTAATTTCTCTGTGTTATGCATCTTTGACGGGCCGTTTGACAGTTGA
GGTGCTGAAAGCAAGTAATCTCCGACATTTACAACTACAAAGGGCACCAG
TTCCAGTCCCTGCGATTGTATTTCTGTGCGTATTATGTGGCTGTATTATC
ATACTATGCATCGTTTATCAACTCCTAAAACGTGATATGTGCTGTAACTT
CGAAGCGGGTCTTGGAGAAATCGAGAAAGCCACAAAGAATGGATACACAG
AGCTCACCGAGCATTTTTACGACTTTGATGAAACCGAAGGCCCGACTACG
GATGATGACCCTCAGAGTCGGAAATCAAGCCGTCGTAGTAGCCGACGTAG
TAGTTACGATTTGACGGCGACAAGTCAATCAGGGGGTGAGATGGGAGTCG
ATTCTTCATCGATATATGGCGGAGAATCGATTGATATTCGAATTAGTGGA
CCCGAAGATGAAGCCCAGAGACATGCTGGCAAAATTCTATTCGAATTCAA
TTATACCCCTGAAACACAAAAGTTGTCTGTGACGGTTATTAAGGCTGCCG
ACGTCCCGTCTAAAGCACGTGGAGGATCGTCCGCCATTCAAGTACGGTTG
GTACTTCTACCGACTAAAGGACAACGGTTCAAAACAAAAGTTCGACCGGC
TTCTAACCCGGTTTTTAATGAGACATTTACATTTATGTATGTTGATCAGA
TAGCCATCAGTCAATTCCAAATTCGAATTCGTATTTACGGTCAGGAGCGT
TATAACCAAGGACGATTGATCGGTGAGCTGATACAACCACTGAAAGAATT
GAATTTATTTAATCCAGCTACGGAAGAAAATCAAGTATGGAAAACGTTAG
CACCCAGAGCTCTAACGATGATCCTTCACGCCACTACACCACCGCCCCCA
CCACCTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000865XLOC_000865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001657-exon-sc0000011-1575043694:373339..373391TCONS_00001657-exon-sc0000011-1575043694:373339..373391Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1575043694:373055..373133TCONS_00001657-exon-sc0000011-1575043694:373055..373133Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1575043694:372251..372348TCONS_00001657-exon-sc0000011-1575043694:372251..372348Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1575043694:366924..367690TCONS_00001657-exon-sc0000011-1575043694:366924..367690Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1575043694:366379..366595TCONS_00001657-exon-sc0000011-1575043694:366379..366595Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1575043694:362890..363767TCONS_00001657-exon-sc0000011-1575043694:362890..363767Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:373339..373391TCONS_00001657-exon-sc0000011-1510915933:373339..373391Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:373055..373133TCONS_00001657-exon-sc0000011-1510915933:373055..373133Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:372251..372348TCONS_00001657-exon-sc0000011-1510915933:372251..372348Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:366924..367690TCONS_00001657-exon-sc0000011-1510915933:366924..367690Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:366379..366595TCONS_00001657-exon-sc0000011-1510915933:366379..366595Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1510915933:362890..363767TCONS_00001657-exon-sc0000011-1510915933:362890..363767Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:373339..373391TCONS_00001657-exon-sc0000011-1491911889:373339..373391Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:373055..373133TCONS_00001657-exon-sc0000011-1491911889:373055..373133Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:372251..372348TCONS_00001657-exon-sc0000011-1491911889:372251..372348Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:366924..367690TCONS_00001657-exon-sc0000011-1491911889:366924..367690Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:366379..366595TCONS_00001657-exon-sc0000011-1491911889:366379..366595Clytia hemisphaericaexon
TCONS_00001657-exon-sc0000011-1491911889:362890..363767TCONS_00001657-exon-sc0000011-1491911889:362890..363767Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001657-proteinTCONS_00001657-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:362890..373391 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.10558 0.294537 0.222946 0.135064 0.915715 0.282234 26.4369 27.6093 9.73027 10.1768 8.27062 6.6899 2.42697 1.79888 0.130329 0.297497 5.43838 4.61301 1.45255 3.33354 10.9525 9.92309 3.26432 4.50731 4.20303 6.64292 4.90016 5.07763 0.115072 0.231453
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Blast
BLAST of TCONS_00001657 vs. Swiss-Prot (Human)
Match: SYT14 (Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 7.851e-68
Identity = 133/344 (38.66%), Postives = 197/344 (57.27%), Query Frame = 2
Query:  485 YDLTATSQSGGEMGVDSSSIYGGESIDIRISGPEDEAQRHAGKILFEFNYTPETQKLSVTVIKAADVPSKARGGSSAIQVRLVLLPTKGQRFKTKVRPASNPVFNETFTFMYVDQIAISQFQIRIRIYGQERYNQGRLIGELIQPLKELNLFNPATEENQVWKTLAPRALTSADSMYDLSDTTSVGSPGFGSPILGGSQSSLTGHSSAPELLISLCYASLTGRLTVEVLKASNLRHLQLQRAPDTYVKVSMFNAVGQQLAKSKTSIRRLMFEPEYNETFVFQIIEFDLASVSLMFSIMNIKKMRRKEILGWFSIGKDNTSEEELFHWREMLEAKGKKVRKWHIL 1516
            Y+    S S   +  +  S  G  S   +   PE EA+   G +   F+Y  + QKL VTV    D+P+  R G ++ QV LVLLP K QR KT ++    PVF ETF F +V+   I  + +R R+YG  R  + +++GE I  L +LNL    +    +  +       S  S+ ++S + S  S           QS    H S PE+LI L Y + TGRL+ EV+K S+ ++L   R P+TYVK+++ N++GQ+++K KTSIRR    P Y ETFVFQ+  F L+ V+L+ S+ N + M+RKE++GW S+G +++ EEEL HW EM E+KG++V +WH L
Sbjct:  223 YEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAK--YGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSS----------CQS--LEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLTLLNSMGQEMSKCKTSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVYNKRSMKRKEMIGWISLGLNSSGEEELNHWTEMKESKGQQVCRWHAL 552          
The following BLAST results are available for this feature:
BLAST of TCONS_00001657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT147.851e-6838.66Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=... [more]
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