|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001656 ID=TCONS_00001656|Name=TCONS_00001656|organism=Clytia hemisphaerica|type=transcript|length=1954bp
AAAACTTATTATGTAATGCCTGGTCACTAATATACTTTGGTTGATTTGTA
TTTTGCTGACTCGGCATTTTACTTTTCTTGACAGTATGGAATTTCCAGTC
CCTGCGATTGTATTTCTGTGCGTATTATGTGGCTGTATTATCATACTATG
CATCGTTTATCAACTCCTAAAACGTGATATGTGCTGTAACTTCGAAGCGG
GTCTTGGAGAAATCGAGAAAGCCACAAAGAATGGATACACAGAGCTCACC
GAGCATTTTTACGACTTTGATGAAACCGAAGGCCCGACTACGGATGATGA
CCCTCAGAGTCGGAAATCAAGCCGTCGTAGTAGCCGACGTAGTAGTTACG
ATTTGACGGCGACAAGTCAATCAGGGGGTGAGATGGGAGTCGATTCTTCA
TCGATATATGGCGGAGAATCGATTGATATTCGAATTAGTGGACCCGAAGA
TGAAGCCCAGAGACATGCTGGCAAAATTCTATTCGAATTCAATTATACCC
CTGAAACACAAAAGTTGTCTGTGACGGTTATTAAGGCTGCCGACGTCCCG
TCTAAAGCACGTGGAGGATCGTCCGCCATTCAAGTACGGTTGGTACTTCT
ACCGACTAAAGGACAACGGTTCAAAACAAAAGTTCGACCGGCTTCTAACC
CGGTTTTTAATGAGACATTTACATTTATGTATGTTGATCAGATAGCCATC
AGTCAATTCCAAATTCGAATTCGTATTTACGGTCAGGAGCGTTATAACCA
AGGACGATTGATCGGTGAGCTGATACAACCACTGAAAGAATTGAATTTAT
TTAATCCAGCTACGGAAGAAAATCAAGTATGGAAAACGTTAGCACCCAGA
GCTCTAACGAGCGCTGATTCCATGTACGATTTATCGGATACTACAAGTGT
CGGTTCACCTGGTTTTGGTTCCCCGATTTTGGGTGGTTCCCAATCCTCAT
TGACTGGACATTCAAGTGCACCAGAGCTTCTAATTTCTCTGTGTTATGCA
TCTTTGACGGGCCGTTTGACAGTTGAGGTGCTGAAAGCAAGTAATCTCCG
ACATTTACAACTACAAAGGGCACCAGACACTTACGTCAAAGTTTCAATGT
TCAACGCGGTGGGACAACAACTGGCCAAAAGTAAAACTTCAATCCGTCGT
TTAATGTTCGAACCCGAATACAATGAAACTTTCGTTTTCCAAATTATCGA
GTTCGATTTAGCAAGTGTCAGCCTCATGTTTTcaatcatgaatatcaaga
aaatGCGACGAAAAGAAATTCTGGGTTGGTTTTCTATTGGTAAAGATAAC
ACTTCGGAAGAAGAACTCTTCCATTGGCGTGAAATGCTTGAAGCGAAAGG
AAAGAAAGTTCGTAAATGGCATATTTTGTCGGCTGTAAATCGAAGCTTTG
ACGATGAATACTGAAGTGGGAAATCAAAGAGTGCAGACAAAATTATCTTC
CTTTTACACAACTCGAGACAAGCATTTAGATGCAGTATTTTAAGATTTGT
ACAGTTAAGTAACCCATTCCAGATCTTGACGTGGTattgtacaaaaaaaa
atattggcaATAAGAATAATATCCTAGACTTTCAACCATATATTAATCTA
CAAATTTCTTCATTAAATTGGCTACGTAGAAATTCTGGTTAATATCTGTC
TGGTTGATATAAGAGGTATTATTAAGTCGAAGCAAGACTTTATCACACct
ccaaaaaaagaaataacCTCCTTTCAAGAGTCACGATTCTCCAAAAACTT
TGACACAAATTTGAACGGATtggattaaatttttattttgagattaaaca
aattgaaagattgtaaaaattgttGTTATATTACTGTATTTAAAAATTGA
CTAATATTTTATTTTGGGCTTACTTTTTCTCATTAGATAGGTCAAGATAA
AAAACTTAAACCATGGATAAGTTAGATctcattttcctttttaaaattGA
GGAA Run BLAST on NCBI transcript from alignment at sc0000011:362890..367899- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001656 ID=TCONS_00001656|Name=TCONS_00001656|organism=Clytia hemisphaerica|type=transcript|length=5010bp|location=Sequence derived from alignment at sc0000011:362890..367899- (Clytia hemisphaerica)
AAAACTTATTATGTAATGCCTGGTCACTAATATACTTTGGTTGATTTGTA
TTTTGCTGACTCGGCATTTTACTTTTCTTGACAGTATGGAATGTAAGTTG
AAATTGTGCTCTAAACTTTCTTTTCCGCCTTGAAGTTTTTATCCTTATAT
AATGATGTGGGTACAATGCTTCCCGTTCGAGTTTAACACCTTTTGTCTTT
CTTTTCTAGTTCCAGTCCCTGCGATTGTATTTCTGTGCGTATTATGTGGC
TGTATTATCATACTATGCATCGTTTATCAACTCCTAAAACGTGATATGTG
CTGTAACTTCGAAGCGGGTCTTGGAGAAATCGAGAAAGCCACAAAGAATG
GATACACAGAGCTCACCGAGCATTTTTACGACTTTGATGAAACCGAAGGC
CCGACTACGGATGATGACCCTCAGAGTCGGAAATCAAGCCGTCGTAGTAG
CCGACGTAGTAGTTACGATTTGACGGCGACAAGTCAATCAGGGGGTGAGA
TGGGAGTCGATTCTTCATCGATATATGGCGGAGAATCGATTGATATTCGA
ATTAGTGGACCCGAAGATGAAGCCCAGAGACATGCTGGCAAAATTCTATT
CGAATTCAATTATACCCCTGAAACACAAAAGTTGTCTGTGACGGTTATTA
AGGCTGCCGACGTCCCGTCTAAAGCACGTGGAGGATCGTCCGCCATTCAA
GTACGGTTGGTACTTCTACCGACTAAAGGACAACGGTTCAAAACAAAAGT
TCGACCGGCTTCTAACCCGGTTTTTAATGAGACATTTACATTTATGTATG
TTGATCAGATAGCCATCAGTCAATTCCAAATTCGAATTCGTATTTACGGT
CAGGAGCGTTATAACCAAGGACGATTGATCGGTGAGCTGATACAACCACT
GAAAGAATTGAATTTATTTAATCCAGCTACGGAAGAAAATCAAGTATGGA
AAACGTTAGCACCCAGAGCTCTAACGGTGAGTATTCAAACTTCATCTAGT
AAGAGGGCGTTCTTTAGGATCTTACTTATAATTGTCTAATGTAAAATATT
TTAAAAACACTACTCTTTAATTTTTCGTAGAAGGGCATAGTGGTCGTAGT
ACTTGAGATATTGGGGTGAATTTGTGGTTTCATATAGTTTATTTTCGCTT
TTTTGACATAAAGTAATAATAGGAGTTGTTAAATTGACATTATTTTGAAC
CCGTACAATTTGGTACAAGAGTATTATGATGGCTTTTTACACGATTTTGC
ATGATTGAAGAATCATTTTCAGATTGTGTGTTTGATGTATAATATACTTT
TCAGAGCGCTGATTCCATGTACGATTTATCGGATACTACAAGTGTCGGTT
CACCTGGTTTTGGTTCCCCGATTTTGGGTGGTTCCCAATCCTCATTGACT
GGACATTCAAGTGCACCAGAGCTTCTAATTTCTCTGTGTTATGCATCTTT
GACGGGCCGTTTGACAGTTGAGGTGCTGAAAGCAAGTAATCTCCGACATT
TACAACTACAAAGGGCACCAGGTGTGTATTATGTTTTATTCTTTTATTTT
ATTTGTTCTGACAATCCTCAAAATTCTACGCTTAGAATATTTTGACTCTG
GATGGCTGTGAATTTTCAGATGGTCGATAAAACAATTCTAGTTTATTAAA
AGATAAGCTAAAATCTATAATATCGTGATCGTATCAACTAATATCTTAAC
AAATATAACTGGAACGTTTGAAAAAGTTTACATAAAATCGTATGTTTTAG
AATTCATAATATTCACGACATAATGTTTCACGGATACCCCCAAAACAACC
CGGGTGTCTGTCACACTAGTTTCATTTTTAAAAATTCAAAACTAGTGTCA
AACACTCGGGCTTTTTGGGGGGCATCCGTATAAAAGATTACTTTATGACC
AGTTTGCAAAGTATGGCAAGGCTGCACTCGAGGAAAAATTCGGAAATACC
AAGTTCTGCACTGGAAGAACGCACCTGATAAATTTTGGTCCGGACAGGGT
GCACCTAGATACCTCGGAAATTCGTCCAAAAAGGCAAAAATTGCTAAAAT
TAGCTGCACTTGAAGAAAAAATAGCTGAACTTTGCACTTGAGGTTAAAAA
AACGTTTGAATTTGCACCTGCACTCAACTTTTTCCGAGTTGTGCACTCGA
GATCTCGAGCAAACTTGTCACACTCTGCAAATTGGCTTTATGAATACCAC
GAGTTCGGTCGAGTGACTCGCAAAATACATTATTGTAAAAACCCACAATA
CTCCCACTAACCGGTTTGGACTCTTTCCTAACCCATCGTCATAAAAATTT
AGATTCGTACGTCAAGATTGAGGTATTATCGGCACGTGGCAAGCGCGTTG
CAAAAAGTAAAACTACCATCCGACGATCTATGACAGATCCCGAATTTAAC
GAATCGTTCGTCTTTCAAATGTCAGAGTCGGATTTGCAGGAAGTGACGTT
AGTCTTTTCCGTCATTTGTATTTCGAAGACACGAAAGAAGAAAGATGTTT
TGGGTTGGTTTACTATGGGTAAAGAAGCCAATAGTTTGGATGAGATCGAC
CATTGGGAAGAAATGATCGCCCACAAAGAACAGAAATCAACGCACTATCA
TGTTTTACTACAAGCTTGAATCGATTGATTCAACATAATTTATTCGGTAG
AAAATAATATTGTTGTTTTCTTCATGGAGCTATGTCAGTCCATATTGTGA
CTGATACATTCGACTTGATTCATATTTTTTTCAACGTTGTAATGTTGACT
TGAAAAACAATCTGTGATGAATTTCGGAGATTTTGGAATCAAATTTGTAC
GAGTTTACTAAATCAAAATTCAATGTTTGTATTTTTGTGAAAAGCATATA
TTTGACCCATTGACCCAAACGGTATCATTTTACCCAGATTGACTTATATG
AAATGTATATATTGATTGGTTTGTAGGAAAAAGCACGATGCTTGTTTTCT
TTGTGGGGTTATTGAAATGTCTGGGACGGATGAATCGAGGCCAATTTACC
ATGGAATTATTATTCATAATCATCTGATGCACACATATTGAGCTCGGCCA
AAATCATACAGTGGTAGTAGATATTTTGAAAATATTTTGGTATTTCTAGA
TACTTGTTGATTTGCAAGGAAGAAATCATATCGTTGATGAGATATTGTTT
TTGTTTTAGAAAACGCTTTAGATGTTTTGTTTTTCTCATTATTTTATTTT
GGGCGTTTTGGTTTACATTGAAAATCTGTTGGAGAGAAGATATGACAAAA
ATACTATTTTGGCTATAGTTTAACCACCCTCCCTAACTTAAGGCAAATAT
TATTTGCTTGGATCCAAAAGTATATTTTAAAACTTTATTTTTACCATTAA
TTTTATCATATCACTCCAAATGTAATATATTATATTGTTAGAAAAGAAAT
ATTTTTAGGTAATTTAAAACAAATTTATCGGAAATATTTACAAAAGGCGT
TTTGAATTATTTTATTCGTTTTAAAATATTTTGTCGCAAAAATTTTGGGC
CTTGTTCCCATGTTAGTTTAAGCAATTATTTTCAATATTATTTAAAAAAG
AATCCTGTCTGAAAAAGAGGCCATTAACGTACATTCGTTGTATTGAGTGA
GTTGAATTGAATTGATATCACTGTAACTTTTGGGCCACGGTGGATTTCTT
TATTTCCTTCGAAAATTACTATCATCTTGAAAGAAGGCTCTTATAATAGA
CCTATTCATAAATTACGTCACGAACATCACTTGCCTCGTATTCAAACAAT
TACCATGGTGATTATGTCCCTTGAGACATAAAATGATTTTTTTATAAATA
GAAGGAGTTTTTCTAAAATCCGTTAATCACCATGGCAATAATTTCAAAAC
GAGGCAAGTGATGTTCATAACGTAATTTATGAAAAGGTCTATTTCCTCCC
AAAGGTCTGGGAAGACGACTTTTGCAGATGACTTTTTGCAAAATCAATGC
ACCAGTTAGTCACTGCAGTTTACAGTATAGTGCACTTAATTCATGTTTAG
TTGGTACACAACGTTGTTTCAACGTCAATCTAACGTTATTTTATGACTAT
TTGGGGGCTATGGTGAATACTTGAAAAAGACTTGATTCAGTGTTGCTTAT
TTTTGTTTTTTCTTTGTTTTTTTTCACTTCAGACACTTACGTCAAAGTTT
CAATGTTCAACGCGGTGGGACAACAACTGGCCAAAAGTAAAACTTCAATC
CGTCGTTTAATGTTCGAACCCGAATACAATGAAACTTTCGTTTTCCAAAT
TATCGAGTTCGATTTAGCAAGTGTCAGCCTCATGTTTTCAATCATGAATA
TCAAGAAAATGCGACGAAAAGAAATTCTGGGTTGGTTTTCTATTGGTAAA
GATAACACTTCGGAAGAAGAACTCTTCCATTGGCGTGAAATGCTTGAAGC
GAAAGGAAAGAAAGTTCGTAAATGGCATATTTTGTCGGCTGTAAATCGAA
GCTTTGACGATGAATACTGAAGTGGGAAATCAAAGAGTGCAGACAAAATT
ATCTTCCTTTTACACAACTCGAGACAAGCATTTAGATGCAGTATTTTAAG
ATTTGTACAGTTAAGTAACCCATTCCAGATCTTGACGTGGTATTGTACAA
AAAAAAATATTGGCAATAAGAATAATATCCTAGACTTTCAACCATATATT
AATCTACAAATTTCTTCATTAAATTGGCTACGTAGAAATTCTGGTTAATA
TCTGTCTGGTTGATATAAGAGGTATTATTAAGTCGAAGCAAGACTTTATC
ACACCTCCAAAAAAAGAAATAACCTCCTTTCAAGAGTCACGATTCTCCAA
AAACTTTGACACAAATTTGAACGGATTGGATTAAATTTTTATTTTGAGAT
TAAACAAATTGAAAGATTGTAAAAATTGTTGTTATATTACTGTATTTAAA
AATTGACTAATATTTTATTTTGGGCTTACTTTTTCTCATTAGATAGGTCA
AGATAAAAAACTTAAACCATGGATAAGTTAGATCTCATTTTCCTTTTTAA
AATTGAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001656-exon-sc0000011-1575043694:367808..367899 | TCONS_00001656-exon-sc0000011-1575043694:367808..367899 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1575043694:366924..367690 | TCONS_00001656-exon-sc0000011-1575043694:366924..367690 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1575043694:366379..366595 | TCONS_00001656-exon-sc0000011-1575043694:366379..366595 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1575043694:362890..363767 | TCONS_00001656-exon-sc0000011-1575043694:362890..363767 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1510915933:367808..367899 | TCONS_00001656-exon-sc0000011-1510915933:367808..367899 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1510915933:366924..367690 | TCONS_00001656-exon-sc0000011-1510915933:366924..367690 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1510915933:366379..366595 | TCONS_00001656-exon-sc0000011-1510915933:366379..366595 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1510915933:362890..363767 | TCONS_00001656-exon-sc0000011-1510915933:362890..363767 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1491911889:367808..367899 | TCONS_00001656-exon-sc0000011-1491911889:367808..367899 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1491911889:366924..367690 | TCONS_00001656-exon-sc0000011-1491911889:366924..367690 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1491911889:366379..366595 | TCONS_00001656-exon-sc0000011-1491911889:366379..366595 | Clytia hemisphaerica | exon |
| TCONS_00001656-exon-sc0000011-1491911889:362890..363767 | TCONS_00001656-exon-sc0000011-1491911889:362890..363767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:362890..367899 - |
Blast
BLAST of TCONS_00001656 vs. Swiss-Prot (Human)
Match: SYT14 (Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=2) HSP 1 Score: 235.343 bits (599), Expect = 3.692e-68 Identity = 133/344 (38.66%), Postives = 197/344 (57.27%), Query Frame = 2
Query: 347 YDLTATSQSGGEMGVDSSSIYGGESIDIRISGPEDEAQRHAGKILFEFNYTPETQKLSVTVIKAADVPSKARGGSSAIQVRLVLLPTKGQRFKTKVRPASNPVFNETFTFMYVDQIAISQFQIRIRIYGQERYNQGRLIGELIQPLKELNLFNPATEENQVWKTLAPRALTSADSMYDLSDTTSVGSPGFGSPILGGSQSSLTGHSSAPELLISLCYASLTGRLTVEVLKASNLRHLQLQRAPDTYVKVSMFNAVGQQLAKSKTSIRRLMFEPEYNETFVFQIIEFDLASVSLMFSIMNIKKMRRKEILGWFSIGKDNTSEEELFHWREMLEAKGKKVRKWHIL 1378
Y+ S S + + S G S + PE EA+ G + F+Y + QKL VTV D+P+ R G ++ QV LVLLP K QR KT ++ PVF ETF F +V+ I + +R R+YG R + +++GE I L +LNL + + + S S+ ++S + S S QS H S PE+LI L Y + TGRL+ EV+K S+ ++L R P+TYVK+++ N++GQ+++K KTSIRR P Y ETFVFQ+ F L+ V+L+ S+ N + M+RKE++GW S+G +++ EEEL HW EM E+KG++V +WH L
Sbjct: 223 YEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAK--YGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSS----------CQS--LEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLTLLNSMGQEMSKCKTSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVYNKRSMKRKEMIGWISLGLNSSGEEELNHWTEMKESKGQQVCRWHAL 552
The following BLAST results are available for this feature:
|
