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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001655 ID=TCONS_00001655|Name=TCONS_00001655|organism=Clytia hemisphaerica|type=transcript|length=1716bp
ATCGGTTTTTGTAACGAGAAAGTTGATTCGTAAAAATCGAACTGATATGA
CGGGTTTTGATCAAACAACCAGCCAATGTGCAATGTTAACGTGAAATTCA
GTAGGAAAGACGTATTCGAGCGCAAACAATGGCTCAACTGCTTATAAATT
TGCAGTAGGAACATCAAAGGTTCTTTATAGGAGTCCAAAAGGAATGCGTT
TTTATCCGCCATACTGAGCAGATCTACAACCCAAGGCAGTGTTACCAACA
GTCTATGATTTTGTACTGAATTCTCTAGAAATGATATCAAATGTAGCGAT
TCAGAAAGCATTTCCCTAGAGCTATCCATTTCCTTTGTATCCGTAATAAC
ATGGTAAGGTGAGAATATGATATAGCCAAGAAACTTCGCACACAATCTCA
ATTCACTGATTGTTGTTTTAATGTCTTGCCATAGAGTGTCAGAAAAATCT
GACCGATTCAACTCAGTATTAATGTGTTGGTGAAGTCCAAACGTATTCGA
ATCCAATGTTTTTAACTTGGTTACAAACACGTGAATAAGACATTTATTGA
ACGTGTAACTATCAGCGATCCggataaaatctttaaagaattCTTCCACT
TTGGTAAAAGTCAGTTTAGGACAAGGATCACATGTCGATGAGGGTCCAGT
TAAACGGTTCTGTAAGCTCTGAAAACGTAGCGGATCTCGTTTCTTTAATT
CTTTTAAAACACCATCTGAAGTATCTGGTTCCTCAGTTTTATCACCAACT
TGGTTTTTATGCATTTCTAAGAGCTGACCGACGAAAAGGCGAGCAAACTG
TAAATCATTATTTAATCCATCTTGGGACGACTTCATGAACTCGTGAACTT
TCTTTGTAAGGAATGTCGTCATATTCCATTCAGGATCTCCAATATTTTCC
TCCCAATGTCGTACGATGGAATAAAACGCGTCTCGTTTCTTCGAAAATGA
ATAGAAATGCCGATCAGAAATGAAACTTTTCCGGTTATCAGAATCCGTTT
GAAACGCTATACCGGTATTTggtgatttcattgaatttagaTAAGACGAG
GTCAAATTGAAGCTGTCGTCTAGAGCTATTTCTTGTTCAAGGTACTCTAA
GAAGTCAGCTTTCGTGAAAAACTGCAATCTAGAATTCTCGAACAACAGCG
TCAATGCCTTTCGATCCAGAATAATGAACAGGTTTTTCATCTTATTGATG
CAAGTGACTGCAAAATAAATATGACATTCAATATTCGGGAAAGGGTGCAA
AAGTTTATCCAAAGCCGAAGTTGATAATCGCACGGTTAATACGGTGAAAA
GGAAATAAAGTTCTAAAGTAACGTTAGGTACCATATTCCATAAGCAAATG
TAAGTGTAAATCTCCGATAACATATCTAACGTTTTCTTCTCAGCAACTTT
GTCTAGATTTAGAATTTCCGTTGATGGTTTAGTAGGTGTAGTCATGGTTC
GGTCTAAGCGACTGTTTCTCAATGACAGTGAGTCCATATCAAAATCGTTT
GGGAAATCGAGTTTCTTGGTTGTTTTCGTTGTCAAGTTAGTTGCAAATCT
TGAGGTATCGCCTTGGAAAATGTTATCGAACGACGGATCCACGTTTTGCG
CTTCGAAGTTCGATTCTTCGAGGAACGAGGTTTGGTTACCGTTAAAAGAG
GTGGACTGCTGAGAAGTAAAGTGTGTGGAATTGGAGGTTTCGATACGCTG
Tggtgttttgtttgtt Run BLAST on NCBI transcript from alignment at sc0000011:322428..324203- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001655 ID=TCONS_00001655|Name=TCONS_00001655|organism=Clytia hemisphaerica|type=transcript|length=1776bp|location=Sequence derived from alignment at sc0000011:322428..324203- (Clytia hemisphaerica)
ATCGGTTTTTGTAACGAGAAAGTTGATTCGTAAAAATCGAACTGATATGA
CGGGTTTTGATCAAACAACCAGCCAATGTGCAATGTTAACGTGAAATTCA
GTAGGAAAGACGTATTCGAGCGCAAACAATGGCTCAACTGCTTATAAATT
TGCAGTAGGAACATCAAAGGTTCTTTATAGGAGTCCAAAAGGAATGCGTT
TTTATCCGCCATACTGAGCAGATCTACAACCCAAGGCAGTGTTACCAACA
GTCTATGATTTTGTACTGAATTCTCTAGAAATGATATCAAATGTAGCGAT
TCAGAAAGCATTTCCCTAGAGCTATCCATTTCCTTTGTATCCGTAATAAC
ATGGTAAGGTGAGAATATGATATAGCCAAGAAACTTCGCACACAATCTCA
ATTCACTGATTGTTGTTTTAATGTCTTGCCATAGAGTGTCAGAAAAATCT
GACCGATTCAACTCAGTATTAATGTGTTGGTGAAGTCCAAACGTATTCGA
ATCCAATGTTTTTAACTTGGTTACAAACACGTGAATAAGACATTTATTGA
ACGTGTAACTATCAGCGATCCGGATAAAATCTTTAAAGAATTCTTCCACT
TTGGTAAAAGTCAGTTTAGGACAAGGATCACATGTCGATGAGGGTCCAGT
TAAACGGTTCTGTAAGCTCTGAAAACGTAGCGGATCTCGTTTCTTTAATT
CTTTTAAAACACCATCTGAAGTATCTGGTTCCTCAGTTTTATCACCAACT
TGGTTTTTATGCATTTCTAAGAGCTGACCGACGAAAAGGCGAGCAAACTG
TAAATCATTATTTAATCCATCTTGGGACGACTTCATGAACTCGTGAACTT
TCTTTGTAAGGAATGTCGTCATATTCCATTCAGGATCTCCAATATTTTCC
TCCCAATGTCGTACGATGGAATAAAACGCGTCTCGTTTCTTCGAAAATGA
ATAGAAATGCCGATCAGAAATGAAACTTTTCCGGTTATCAGAATCCGTTT
GAAACGCTATACCGGTATTTGGTGATTTCATTGAATTTAGATAAGACGAG
GTCAAATTGAAGCTGTCGTCTAGAGCTATTTCTTGTTCAAGGTACTCTAA
GAAGTCAGCTTTCGTGAAAAACTGCAATCTAGAATTCTCGAACAACAGCG
TCAATGCCTTTCGATCCAGAATAATGAACAGGTTTTTCATCTTATTGATG
CAAGTGACTGCAAAATAAATATGACATTCAATATTCGGGAAAGGGTGCAA
AAGTTTATCCAAAGCCGAAGTTGATAATCGCACGGTTAATACGGTGAAAA
GGAAATAAAGTTCTAAAGTAACGTTAGGTACCATATTCCATAAGCAAATG
TAAGTGTAAATCTCCGATAACATATCTAACGTTTTCTTCTCAGCAACTTT
GTCTAGATTTAGAATTTCCGTTGATGGTTTAGTAGGTGTAGTCATGGTTC
GGTCTAAGCGACTGTTTCTCAATGACAGTGAGTCCATATCAAAATCGTTT
GGGAAATCGAGTTTCTTGGTTGTTTTCGTTGTCAAGTTAGTTGCAAATCT
TGAGGTATCGCCTTGGAAAATGTTATCGAACGACGGATCCACGTTTTGCG
CTTCGAAGTTCGATTCTTCGAGGAACGAGGTTTGGTTACCGTTAAAAGAG
GTGGACTGCTGAGAAGTAAAGTGTGTGGAATTGGAGGTTTCGATACGCTG
TGGTGTTANGGTGGACTGCTGAGAAGTAAAGTGTGTGGAATTAGAGGTTT
CGATACGCTGTGGTGTTTTGTTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001655-exon-sc0000011-1575043694:322518..324203 | TCONS_00001655-exon-sc0000011-1575043694:322518..324203 | Clytia hemisphaerica | exon |
| TCONS_00001655-exon-sc0000011-1575043694:322428..322457 | TCONS_00001655-exon-sc0000011-1575043694:322428..322457 | Clytia hemisphaerica | exon |
| TCONS_00001655-exon-sc0000011-1510915933:322518..324203 | TCONS_00001655-exon-sc0000011-1510915933:322518..324203 | Clytia hemisphaerica | exon |
| TCONS_00001655-exon-sc0000011-1510915933:322428..322457 | TCONS_00001655-exon-sc0000011-1510915933:322428..322457 | Clytia hemisphaerica | exon |
| TCONS_00001655-exon-sc0000011-1491911889:322518..324203 | TCONS_00001655-exon-sc0000011-1491911889:322518..324203 | Clytia hemisphaerica | exon |
| TCONS_00001655-exon-sc0000011-1491911889:322428..322457 | TCONS_00001655-exon-sc0000011-1491911889:322428..322457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:322428..324203 - |
Blast
BLAST of TCONS_00001655 vs. Swiss-Prot (Human)
Match: CDAN1 (Codanin-1 OS=Homo sapiens GN=CDAN1 PE=1 SV=4) HSP 1 Score: 211.846 bits (538), Expect = 4.018e-58 Identity = 146/450 (32.44%), Postives = 229/450 (50.89%), Query Frame = -2
Query: 135 KVAEKKTLDMLSEIYTYICLWNMVPNVTLELYFLFTVLTVR-----------LSTSALDKLLHP-FPNIECHIYFAVTCINKMKNLFIILDRKALTLLFENSRLQFFTKADFLEYLEQEIALDDSFNLTSSYLNSMKSPNT-GIAFQTDSDNRKSFISDRHFYSFSKKRDAFYSIVRHWEENIGDPEWNMTTFLTKKVHEFMKSSQDGLNNDLQFARLFVGQLLEMHKNQVGDK----TEEPDTSDGVLKELKKRDPLRFQSLQNRLTGPSSTCDPCPKLTFTKVEEFFKDFIRIADSYTFNKCLIHVFVTKLKTLDSNTFGLHQHINTELNRSDF-SDTLWQDIKTTIS----ELRLCAKFLGYIIFSPYHV--ITDTKEMDSS----REMLSESLHLISFLENSVQNHRLLVTLPWVVDLLSMADKNAFLLDSYKEPLMFLLQIYKQL 1400
+V+ ++ L++++ +Y+ N+VPN+ LEL+F+F +LT R LS + LD L P F +I ++FAV + + LD+ L LL EN RL F+ A + L ++ + + ++ + P+T ++FQ ++DNR +F SDR F++F K+RD FY ++R WE++ +P W+ L ++ M ++ F RLF QLL+M ++ G E PD VL L R LQ RL P S+ PCP TF + FF+DFI A S+ FN+ L+ K++ L N L QH E N D SD WQ + + LRL AKFLG++ F PY T E+ S R + L + + L+ +Q R ++T+PW+V+ LS AD LL+ Y++ LL++++ L
Sbjct: 295 RVSSRQRLELVALVYSSCIAENLVPNLFLELFFVFQLLTARRMVTAKDSDPELSPAVLDSLESPLFQSIHDCVFFAVQVLECHFQVLSNLDKGTLKLLAENERLLCFSPA-------LQGRLRAAYEGSVAKVSLVMPPSTQAVSFQPETDNRANFSSDRAFHTFKKQRDVFYEVLREWEDHHEEPGWDFEKGLGSRIRAMMGQLSAACSHS-HFVRLFQKQLLQMCQSPGGAGGTVLGEAPD----VLSMLGADKLGRLWRLQERLMAPQSSGGPCPPPTFPGCQGFFRDFILSASSFQFNQHLMDSLSLKIQEL--NGLALPQH---EPNDEDGESDVDWQGERKQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTGELQDSILALRSQVPPVLDVRTLLQRGLQARRAVLTVPWLVEFLSFADHVVPLLEYYRDIFTLLLRLHRSL 727
The following BLAST results are available for this feature:
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