TCONS_00001635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001635
Unique NameTCONS_00001635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2167

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001635 ID=TCONS_00001635|Name=TCONS_00001635|organism=Clytia hemisphaerica|type=transcript|length=2167bp
TTAAGCTTGTATAAAACGATACGAAACGAAAGGTGAAACCATgagcaaac
aaaacaaaaacaacactGTTTTAAAGCCTTGTAGATAATATATCATTGCG
GGTTAAATGGAATAGAGCAAGAAAGATAAGGACAGAAATCAAAATAGCAG
TGAAAAAATCAATGTCAAATTATACAGTTCAACACAAATGAAATATTAAA
GAAAACATGGCAAAGATTTCCAAGAAGATTTTCTCATCGACACAATCAAC
AAACACGGGAGAGTTGAGCACCGTCTATTACTTTTACGTTATATACGAAT
GTATCTTAATCAATATTATTGGTTTTGTAACTTTGTTTTTCCAATGTGAA
TTGCAGAGTATTGAGTATaaattcgaaaataaatatGGTCCACAGATGAA
TATCACACAATGGGAGTGGGACTCACTCTTCGGTCATTACTGGttaaaac
atgatttaaactgCAATACCAGAGCTGCACATTGTTCAACGTATATGATT
GCTGGTTGGTTAATGATCGCAAGTGTTCTACAAGCTTTCGTCAATTTCGA
TGGACTACGTCAAAAATTATTCCCAAAAACCAACAATAATGTTATTTTAC
CAAAGTCTATCAAGATGATTTGCATGTATGCTTTCTTTGTTTGTGATTGG
TATTGGGTGGTTTTGATGTATGTCTTTAAGGATGTGGTAGGATGGCAACA
GGCGATTGGATCAGCTGTTGATATTGCAATACGTTTGGTATTCGTCATGA
AGCCGAGCCTGAtgtttaaaaaagaagaaaataaagaccAACTTGGTAAT
GGTGTTAAATTACAAGTAATGGACTCCAAAAAGTTGTATGGAGAAAATGG
AATCAAAGAAATCCGTAATTAAGAATGAATACAAGATAATTTAATGGCCT
TAATACAGAAAAGTAAACATTTGGAAACTTATCGTCGATGAATAATTCTg
gataaaaataatcaaaatcacTTACATAACCTACGTCACCCTTTCATGAA
GACAAACTTGGTCCATTTTTTGCACCATAAGGTTGagatgttttaatttt
tatatttttttcgattaaatttatttttaactcctgaaattgaaagcaaa
aagaTTTGACGAAAGCATGTGAAAACTACTCTGCCAAAAGaatacttata
aaaaacacaTAAAATTAAGTATCACAATAAAACTTTTGGAGCTTTTTCGC
TCACCCACTGACCAATAATAGCCACAACAACACCCAGGACTAAATTTCAA
AGTGACTGAGATATCCGGTATATTGTATAAAAAAGGATATCTCCCAAAGG
GCGAGGGTATAacgttatcaaaaatttgcTTTTAAGTATTTTCTTAAACT
TATGAATaacaaacaaaaacacaaaaactttaacatcataaataaaacaa
agtgatttttaaaaaatacataTAAACACAAAAtcgcaaataaaaaattt
aaagaaaaaagaaactgtTGTATAACCATGAAAAAAGCAACATGAAAATT
TGATTCGTAAGACAATAAACTTTATAACAgtataacaaaataacaaagta
aacaaaagaaaaattgtataaaaataCCTCTTAGATACATACATATTACT
ATAAAAAAGAACCCATACAGTAACTTTTGTTAGAATGTTCAGTAAAACCT
GATCTAAGAAGGCCATCGAATATTGCAcgttttcttatgagaaaaaAGAG
GCTGAATTTCGGTAAAAACCGAGAACAAATTTTAAGGACAATCTCGACTT
CAGATGTCAAAACGCAAGGAGGCAAGAGCTTATTTTCAGCCAGAGAAGCa
cgaaaaattagaaatggtttcgcctcagcaaaaattcagtggttcttata
aaaaaatctggaaaattttctttaaaagagcttaataagattattttagt
gaaaaatacATTAAAGTACTATATAATTACTATATTActaaagaaaacaa
caaaaaaatacttttttcttaaaattaacTAAAATAACTAAATACAACTT
CTATAATTTAATAGCTACTTTTTTAAGGATaattaaattgtaaatttata
acaattatctttttttttattgaaagaaaaaatattccaacaaaaaatac
taataataattttattgaaaaacctATTTGAGTTCTACATGTACCTCGAC
TAGAGTCGATTGATCAG
Run BLAST on NCBI

transcript from alignment at sc0000011:48114..50921-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001635 ID=TCONS_00001635|Name=TCONS_00001635|organism=Clytia hemisphaerica|type=transcript|length=2808bp|location=Sequence derived from alignment at sc0000011:48114..50921- (Clytia hemisphaerica)
TTAAGCTTGTATAAAACGATACGAAACGAAAGGTGAAACCATGAGCAAAC
AAAACAAAAACAACACTGTTTTAAAGCCTTGTAGATAATATATCATTGCG
GGTTAAATGGAATAGAGCAAGAAAGATAAGGACAGAAATCAAAATAGCAG
TGAAAAAATCAATGTCAAATTATACAGTTCAACACAAATGAAATATTAAA
GAAAACATGGCAAAGATTTCCAAGAAGATTTTCTCATCGACACAATCAAC
AAACACGGGAGAGTTGAGCACCGTCTATTACTTTTACGTTATATACGAAT
GTATCTTAATCAATATTATTGGTTTTGTAACTTTGTTTTTCCAATGTGAA
TTGCAGAGTATTGAGTATAAATTCGAAAATAAATATGGTCCACAGATGAA
TATCACACAATGGGAGTGGGACTCACTCTTCGGTCATTACTGGTTAAAAC
ATGATTTAAACTGCAATACCAGGTAACCCTAAATATGTTTGTGCACTGTT
TTTTTTGAAAAAGTTGAAATTTTTCTAATTTTTTTTTTAAACTCAAAACT
TTAAAATGTCATCGAAGCTTGTAGCTTTTGATCTAGAAAATGGTTTTGGT
ACCATTGGAAAGCTATTTTCATACTCTTTCTAAAAGCATTCGGTTTATCC
CCCTTTAAATCAAGTGGCCAGGAGCTATGGCCTCAAGTCTGAGACTTATT
GAGAGAGTATTCTGGCTTGTTTGGACGCATATACGCGTCCCTCGTGATCT
AAGGGTTAATATGTTTGAAAAATTTGAAAATTTTAATTCCAATGTTGGTC
AAATTTGATGGGTGCATTTTTTATGGGGGACAGTTTCCATGGGACCATGA
TTCCATAGGAAAACTTTCTGCCATTGTTCAAAGAGCTTGTGACTTGCACA
AGTAAAGAATTGATTAAAAATCAAAACTTGTAAAAACCAAGACTCAATGA
GAATAAGCCATTTCTTTTTATATCCCAAGTGGAAATGGAGGAAAGGAGTA
AAACAGGATGTAAATTATAAAAAATACTTTGGGTCTCGATCTAAGATGGA
CTATAATGAAAGTAGATTAATGAAATTTAATGATTTAATACCTTTTCCTA
CTTTCTATTCTAGAGCTGCACATTGTTCAACGTATATGATTGCTGGTTGG
TTAATGATCGCAAGTGTTCTACAAGCTTTCGTCAATTTCGATGGACTACG
TCAAAAATTATTCCCAAAAACCAACAATAATGTTATTTTACCAAAGTCTA
TCAAGATGATTTGCATGTATGCTTTCTTTGTTTGTGATTGGTATTGGGTG
GTTTTGATGTATGTCTTTAAGGATGTGGTAGGATGGCAACAGGCGATTGG
ATCAGCTGTTGATATTGCAATACGTTTGGTATTCGTCATGAAGCCGAGCC
TGATGTTTAAAAAAGAAGAAAATAAAGACCAACTTGGTAATGGTGTTAAA
TTACAAGTAATGGACTCCAAAAAGTTGTATGGAGAAAATGGAATCAAAGA
AATCCGTAATTAAGAATGAATACAAGATAATTTAATGGCCTTAATACAGA
AAAGTAAACATTTGGAAACTTATCGTCGATGAATAATTCTGGATAAAAAT
AATCAAAATCACTTACATAACCTACGTCACCCTTTCATGAAGACAAACTT
GGTCCATTTTTTGCACCATAAGGTTGAGATGTTTTAATTTTTATATTTTT
TTCGATTAAATTTATTTTTAACTCCTGAAATTGAAAGCAAAAAGATTTGA
CGAAAGCATGTGAAAACTACTCTGCCAAAAGAATACTTATAAAAAACACA
TAAAATTAAGTATCACAATAAAACTTTTGGAGCTTTTTCGCTCACCCACT
GACCAATAATAGCCACAACAACACCCAGGACTAAATTTCAAAGTGACTGA
GATATCCGGTATATTGTATAAAAAAGGATATCTCCCAAAGGGCGAGGGTA
TAACGTTATCAAAAATTTGCTTTTAAGTATTTTCTTAAACTTATGAATAA
CAAACAAAAACACAAAAACTTTAACATCATAAATAAAACAAAGTGATTTT
TAAAAAATACATATAAACACAAAATCGCAAATAAAAAATTTAAAGAAAAA
AGAAACTGTTGTATAACCATGAAAAAAGCAACATGAAAATTTGATTCGTA
AGACAATAAACTTTATAACAGTATAACAAAATAACAAAGTAAACAAAAGA
AAAATTGTATAAAAATACCTCTTAGATACATACATATTACTATAAAAAAG
AACCCATACAGTAACTTTTGTTAGAATGTTCAGTAAAACCTGATCTAAGA
AGGCCATCGAATATTGCACGTTTTCTTATGAGAAAAAAGAGGCTGAATTT
CGGTAAAAACCGAGAACAAATTTTAAGGACAATCTCGACTTCAGATGTCA
AAACGCAAGGAGGCAAGAGCTTATTTTCAGCCAGAGAAGCACGAAAAATT
AGAAATGGTTTCGCCTCAGCAAAAATTCAGTGGTTCTTATAAAAAAATCT
GGAAAATTTTCTTTAAAAGAGCTTAATAAGATTATTTTAGTGAAAAATAC
ATTAAAGTACTATATAATTACTATATTACTAAAGAAAACAACAAAAAAAT
ACTTTTTTCTTAAAATTAACTAAAATAACTAAATACAACTTCTATAATTT
AATAGCTACTTTTTTAAGGATAATTAAATTGTAAATTTATAACAATTATC
TTTTTTTTTATTGAAAGAAAAAATATTCCAACAAAAAATACTAATAATAA
TTTTATTGAAAAACCTATTTGAGTTCTACATGTACCTCGACTAGAGTCGA
TTGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000850XLOC_000850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001635-exon-sc0000011-1575043694:50450..50921TCONS_00001635-exon-sc0000011-1575043694:50450..50921Clytia hemisphaericaexon
TCONS_00001635-exon-sc0000011-1575043694:48114..49808TCONS_00001635-exon-sc0000011-1575043694:48114..49808Clytia hemisphaericaexon
TCONS_00001635-exon-sc0000011-1510915933:50450..50921TCONS_00001635-exon-sc0000011-1510915933:50450..50921Clytia hemisphaericaexon
TCONS_00001635-exon-sc0000011-1510915933:48114..49808TCONS_00001635-exon-sc0000011-1510915933:48114..49808Clytia hemisphaericaexon
TCONS_00001635-exon-sc0000011-1491911889:50450..50921TCONS_00001635-exon-sc0000011-1491911889:50450..50921Clytia hemisphaericaexon
TCONS_00001635-exon-sc0000011-1491911889:48114..49808TCONS_00001635-exon-sc0000011-1491911889:48114..49808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:48114..50921 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.51125	2.00639	4.04777	2.06175	3.01289	2.78101	3.55602	3.51995	6.01238	8.14126	5.53127	4.27232	7.62811	5.29924	9.04006	8.32207	2.50526	2.81154	2.58335	1.74101	0.23725	0.395585	7.93128	5.57265
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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