Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00001634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001634
Unique NameTCONS_00001634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001634 ID=TCONS_00001634|Name=TCONS_00001634|organism=Clytia hemisphaerica|type=transcript|length=1765bp
CAACACAAATGAAATATTAAAGAAAACATGGCAAAGATTTCCAAGAAGAT
TTTCTCATCGACACAATCAACAAACACGGGAGAGTTGAGCACCGTCTATT
ACTTTTACGTTATATACGAATGTATCTTAATCAATATTATTGGTTTTGTA
ACTTTGTTTTTCCAATGTGAATTGCAGAGTATTGAGTATaaattcgaaaa
taaatatGGTCCACAGATGAATATCACACAATGGGAGTGGGACTCACTCT
TCGGTCATTACTGGttaaaacatgatttaaactgCAATACCAGAGCTGCA
CATTGTTCAACGTATATGATTGCTGGTTGGTTAATGATCGCAAGTGTTCT
ACAAGCTTTCGTCAATTTCGATGGACTACGTCAAAAATTATTCCCAAAAA
CCAACAATAATGTTATTTTACCAAAGTCTATCAAGATGATTTGCATGTAT
GCTTTCTTTGTTTGTGATTGGTATTGGGTGGTTTTGATGTATGTCTTTAA
GGATGTGGTAGGATGGCAACAGGCGATTGGATCAGCTGTTGATATTGCAA
TACGTTTGGTATTCGTCATGAAGCCGAGCCTGGTCACCCTTTCATGAAGA
CAAACTTGGTCCATTTTTTGCACCATAAGGTTGagatgttttaattttta
tatttttttcgattaaatttatttttaactcctgaaattgaaagcaaaaa
gaTTTGACGAAAGCATGTGAAAACTACTCTGCCAAAAGaatacttataaa
aaacacaTAAAATTAAGTATCACAATAAAACTTTTGGAGCTTTTTCGCTC
ACCCACTGACCAATAATAGCCACAACAACACCCAGGACTAAATTTCAAAG
TGACTGAGATATCCGGTATATTGTATAAAAAAGGATATCTCCCAAAGGGC
GAGGGTATAacgttatcaaaaatttgcTTTTAAGTATTTTCTTAAACTTA
TGAATaacaaacaaaaacacaaaaactttaacatcataaataaaacaaag
tgatttttaaaaaatacataTAAACACAAAAtcgcaaataaaaaatttaa
agaaaaaagaaactgtTGTATAACCATGAAAAAAGCAACATGAAAATTTG
ATTCGTAAGACAATAAACTTTATAACAgtataacaaaataacaaagtaaa
caaaagaaaaattgtataaaaataCCTCTTAGATACATACATATTACTAT
AAAAAAGAACCCATACAGTAACTTTTGTTAGAATGTTCAGTAAAACCTGA
TCTAAGAAGGCCATCGAATATTGCAcgttttcttatgagaaaaaAGAGGC
TGAATTTCGGTAAAAACCGAGAACAAATTTTAAGGACAATCTCGACTTCA
GATGTCAAAACGCAAGGAGGCAAGAGCTTATTTTCAGCCAGAGAAGCacg
aaaaattagaaatggtttcgcctcagcaaaaattcagtggttcttataaa
aaaatctggaaaattttctttaaaagagcttaataagattattttagtga
aaaatacATTAAAGTACTATATAATTACTATATTActaaagaaaacaaca
aaaaaatacttttttcttaaaattaacTAAAATAACTAAATACAACTTCT
ATAATTTAATAGCTACTTTTTTAAGGATaattaaattgtaaatttataac
aattatctttttttttattgaaagaaaaaatattccaacaaaaaatacta
ataataattttattgaaaaacctATTTGAGTTCTACATGTACCTCGACTA
GAGTCGATTGATCAG
Run BLAST on NCBI

protein sequence of TCONS_00001634-protein

>TCONS_00001634-protein ID=TCONS_00001634-protein|Name=TCONS_00001634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MAKISKKIFSSTQSTNTGELSTVYYFYVIYECILINIIGFVTLFFQCELQ
SIEYKFENKYGPQMNITQWEWDSLFGHYWLKHDLNCNTRAAHCSTYMIAG
WLMIASVLQAFVNFDGLRQKLFPKTNNNVILPKSIKMICMYAFFVCDWYW
VVLMYVFKDVVGWQQAIGSAVDIAIRLVFVMKPSLVTLS
Run BLAST on NCBI

transcript from alignment at sc0000011:48114..50742-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001634 ID=TCONS_00001634|Name=TCONS_00001634|organism=Clytia hemisphaerica|type=transcript|length=2629bp|location=Sequence derived from alignment at sc0000011:48114..50742- (Clytia hemisphaerica)
CAACACAAATGAAATATTAAAGAAAACATGGCAAAGATTTCCAAGAAGAT TTTCTCATCGACACAATCAACAAACACGGGAGAGTTGAGCACCGTCTATT ACTTTTACGTTATATACGAATGTATCTTAATCAATATTATTGGTTTTGTA ACTTTGTTTTTCCAATGTGAATTGCAGAGTATTGAGTATAAATTCGAAAA TAAATATGGTCCACAGATGAATATCACACAATGGGAGTGGGACTCACTCT TCGGTCATTACTGGTTAAAACATGATTTAAACTGCAATACCAGGTAACCC TAAATATGTTTGTGCACTGTTTTTTTTGAAAAAGTTGAAATTTTTCTAAT TTTTTTTTTAAACTCAAAACTTTAAAATGTCATCGAAGCTTGTAGCTTTT GATCTAGAAAATGGTTTTGGTACCATTGGAAAGCTATTTTCATACTCTTT CTAAAAGCATTCGGTTTATCCCCCTTTAAATCAAGTGGCCAGGAGCTATG GCCTCAAGTCTGAGACTTATTGAGAGAGTATTCTGGCTTGTTTGGACGCA TATACGCGTCCCTCGTGATCTAAGGGTTAATATGTTTGAAAAATTTGAAA ATTTTAATTCCAATGTTGGTCAAATTTGATGGGTGCATTTTTTATGGGGG ACAGTTTCCATGGGACCATGATTCCATAGGAAAACTTTCTGCCATTGTTC AAAGAGCTTGTGACTTGCACAAGTAAAGAATTGATTAAAAATCAAAACTT GTAAAAACCAAGACTCAATGAGAATAAGCCATTTCTTTTTATATCCCAAG TGGAAATGGAGGAAAGGAGTAAAACAGGATGTAAATTATAAAAAATACTT TGGGTCTCGATCTAAGATGGACTATAATGAAAGTAGATTAATGAAATTTA ATGATTTAATACCTTTTCCTACTTTCTATTCTAGAGCTGCACATTGTTCA ACGTATATGATTGCTGGTTGGTTAATGATCGCAAGTGTTCTACAAGCTTT CGTCAATTTCGATGGACTACGTCAAAAATTATTCCCAAAAACCAACAATA ATGTTATTTTACCAAAGTCTATCAAGATGATTTGCATGTATGCTTTCTTT GTTTGTGATTGGTATTGGGTGGTTTTGATGTATGTCTTTAAGGATGTGGT AGGATGGCAACAGGCGATTGGATCAGCTGTTGATATTGCAATACGTTTGG TATTCGTCATGAAGCCGAGCCTGATGTTTAAAAAAGAAGAAAATAAAGAC CAACTTGGTAATGGTGTTAAATTACAAGTAATGGACTCCAAAAAGTTGTA TGGAGAAAATGGAATCAAAGAAATCCGTAATTAAGAATGAATACAAGATA ATTTAATGGCCTTAATACAGAAAAGTAAACATTTGGAAACTTATCGTCGA TGAATAATTCTGGATAAAAATAATCAAAATCACTTACATAACCTACGTCA CCCTTTCATGAAGACAAACTTGGTCCATTTTTTGCACCATAAGGTTGAGA TGTTTTAATTTTTATATTTTTTTCGATTAAATTTATTTTTAACTCCTGAA ATTGAAAGCAAAAAGATTTGACGAAAGCATGTGAAAACTACTCTGCCAAA AGAATACTTATAAAAAACACATAAAATTAAGTATCACAATAAAACTTTTG GAGCTTTTTCGCTCACCCACTGACCAATAATAGCCACAACAACACCCAGG ACTAAATTTCAAAGTGACTGAGATATCCGGTATATTGTATAAAAAAGGAT ATCTCCCAAAGGGCGAGGGTATAACGTTATCAAAAATTTGCTTTTAAGTA TTTTCTTAAACTTATGAATAACAAACAAAAACACAAAAACTTTAACATCA TAAATAAAACAAAGTGATTTTTAAAAAATACATATAAACACAAAATCGCA AATAAAAAATTTAAAGAAAAAAGAAACTGTTGTATAACCATGAAAAAAGC AACATGAAAATTTGATTCGTAAGACAATAAACTTTATAACAGTATAACAA AATAACAAAGTAAACAAAAGAAAAATTGTATAAAAATACCTCTTAGATAC ATACATATTACTATAAAAAAGAACCCATACAGTAACTTTTGTTAGAATGT TCAGTAAAACCTGATCTAAGAAGGCCATCGAATATTGCACGTTTTCTTAT GAGAAAAAAGAGGCTGAATTTCGGTAAAAACCGAGAACAAATTTTAAGGA CAATCTCGACTTCAGATGTCAAAACGCAAGGAGGCAAGAGCTTATTTTCA GCCAGAGAAGCACGAAAAATTAGAAATGGTTTCGCCTCAGCAAAAATTCA GTGGTTCTTATAAAAAAATCTGGAAAATTTTCTTTAAAAGAGCTTAATAA GATTATTTTAGTGAAAAATACATTAAAGTACTATATAATTACTATATTAC TAAAGAAAACAACAAAAAAATACTTTTTTCTTAAAATTAACTAAAATAAC TAAATACAACTTCTATAATTTAATAGCTACTTTTTTAAGGATAATTAAAT TGTAAATTTATAACAATTATCTTTTTTTTTATTGAAAGAAAAAATATTCC AACAAAAAATACTAATAATAATTTTATTGAAAAACCTATTTGAGTTCTAC ATGTACCTCGACTAGAGTCGATTGATCAG

Coding sequence (CDS) from alignment at sc0000011:48114..50742-

>TCONS_00001634 ID=TCONS_00001634|Name=TCONS_00001634|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at sc0000011:48114..50742- (Clytia hemisphaerica)
GTCACCCTTTCATGAAGCTGCACATTGTTCAACGTATATGATTGCTGGTT
GGTTAATGATCGCAAGTGTTCTACAAGCTTTCGTCAATTTCGATGGACTA
CGTCAAAAATTATTCCCAAAAACCAACAATAATGTTATTTTACCAAAGTC
TATCAAGATGATTTGCATGTATGCTTTCTTTGTTTGTGATTGGTATTGGG
TGGTTTTGATGTATGTCTTTAAGGATGTGGTAGGATGGCAACAGGCGATT
GGATCAGCTGTTGATATTGCAATACGTTTGGTATTCGTCATGAAGCCGAG
CCTGATGGCAAAGATTTCCAAGAAGATTTTCTCATCGACACAATCAACAA
ACACGGGAGAGTTGAGCACCGTCTATTACTTTTACGTTATATACGAATGT
ATCTTAATCAATATTATTGGTTTTGTAACTTTGTTTTTCCAATGTGAATT
GCAGAGTATTGAGTATAAATTCGAAAATAAATATGGTCCACAGATGAATA
TCACACAATGGGAGTGGGACTCACTCTTCGGTCATTACTGGTTAAAACAT
GATTTAAACTGCAATACCAGGTCACCCTTTCATGAAGCTGCACATTGTTC
AACGTATATGATTGCTGGTTGGTTAATGATCGCAAGTGTTCTACAAGCTT
TCGTCAATTTCGATGGACTACGTCAAAAATTATTCCCAAAAACCAACAAT
AATGTTATTTTACCAAAGTCTATCAAGATGATTTGCATGTATGCTTTCTT
TGTTTGTGATTGGTATTGGGTGGTTTTGATGTATGTCTTTAAGGATGTGG
TAGGATGGCAACAGGCGATTGGATCAGCTGTTGATATTGCAATACGTTTG
GTATTCGTCATGAAGCCGAGCCTGATGGCAAAGATTTCCAAGAAGATTTT
CTCATCGACACAATCAACAAACACGGGAGAGTTGAGCACCGTCTATTACT
TTTACGTTATATACGAATGTATCTTAATCAATATTATTGGTTTTGTAACT
TTGTTTTTCCAATGTGAATTGCAGAGTATTGAGTATAAATTCGAAAATAA
ATATGGTCCACAGATGAATATCACACAATGGGAGTGGGACTCACTCTTCG
GTCATTACTGGTTAAAACATGATTTAAACTGCAATACCAGGTCACCCTTT
CATGAAGCTGCACATTGTTCAACGTATATGATTGCTGGTTGGTTAATGAT
CGCAAGTGTTCTACAAGCTTTCGTCAATTTCGATGGACTACGTCAAAAAT
TATTCCCAAAAACCAACAATAATGTTATTTTACCAAAGTCTATCAAGATG
ATTTGCATGTATGCTTTCTTTGTTTGTGATTGGTATTGGGTGGTTTTGAT
GTATGTCTTTAAGGATGTGGTAGGATGGCAACAGGCGATTGGATCAGCTG
TTGATATTGCAATACGTTTGGTATTCGTCATGAAGCCGAGCCTGATGGCA
AAGATTTCCAAGAAGATTTTCTCATCGACACAATCAACAAACACGGGAGA
GTTGAGCACCGTCTATTACTTTTACGTTATATACGAATGTATCTTAATCA
ATATTATTGGTTTTGTAACTTTGTTTTTCCAATGTGAATTGCAGAGTATT
GAGTATAAATTCGAAAATAAATATGGTCCACAGATGAATATCACACAATG
GGAGTGGGACTCACTCTTCGGTCATTACTGGTTAAAACATGATTTAAACT
GCAATACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000850XLOC_000850Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001634-proteinTCONS_00001634-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001634-exon-sc0000011-1575043694:50450..50742TCONS_00001634-exon-sc0000011-1575043694:50450..50742Clytia hemisphaericaexon
TCONS_00001634-exon-sc0000011-1575043694:49520..49808TCONS_00001634-exon-sc0000011-1575043694:49520..49808Clytia hemisphaericaexon
TCONS_00001634-exon-sc0000011-1575043694:48114..49296TCONS_00001634-exon-sc0000011-1575043694:48114..49296Clytia hemisphaericaexon
TCONS_00001634-exon-sc0000011-1510915933:50450..50742TCONS_00001634-exon-sc0000011-1510915933:50450..50742Clytia hemisphaericaexon
TCONS_00001634-exon-sc0000011-1510915933:49520..49808TCONS_00001634-exon-sc0000011-1510915933:49520..49808Clytia hemisphaericaexon
TCONS_00001634-exon-sc0000011-1510915933:48114..49296TCONS_00001634-exon-sc0000011-1510915933:48114..49296Clytia hemisphaericaexon
TCONS_00001634-exon-sc0000011-1491911889:50450..50742TCONS_00001634-exon-sc0000011-1491911889:50450..50742Clytia hemisphaericaexon
TCONS_00001634-exon-sc0000011-1491911889:49520..49808TCONS_00001634-exon-sc0000011-1491911889:49520..49808Clytia hemisphaericaexon
TCONS_00001634-exon-sc0000011-1491911889:48114..49296TCONS_00001634-exon-sc0000011-1491911889:48114..49296Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:48114..50742 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.0768241 0 0 0 0 0.173804 0 0 0 0 0.145038 0 0 0 0 0 0 0 0 0 0 0 0.245357 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top