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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001621 ID=TCONS_00001621|Name=TCONS_00001621|organism=Clytia hemisphaerica|type=transcript|length=1896bp
gTAAAAAATGCTTGTAGCGATTGTGACACATAATTagctttataattttt
tcaagtCCCACGAGACATCCCTCGAGAGAGAATTACAGTTTTGACTACAG
TAGTTTTATGTAACGTTGATTGAATTGTGATTGATTTGACATAAAGTTTT
CTTTGTCTGTGGAGCTGATAGTAGACTTGANTTGTGATTGATTTGACATA
AAGTTTTCTTTGTCTGTGGAGCTGATAGCAGACTTGAATTTTTtacagca
atattttttttgttaataatgGAAGAAACTCAACGCAAAAGAAGAAATGA
TTCTGCCACAGAAAGTAATGAAGCTTATGAGAAGAAACAGAGGGTGGAAC
AATTAATTGGTGCTTTGTCAAAACCAGCAAAGAAACTTTCAAGTAGTTCG
TCTATAGATTCGATTGATACTAAACTTTGTATTGagCAACCAGATGACGA
GGAAGAAAATGTTGACGTTGTCACGTCTAGTCCGCCATCTCCCGTTCTTA
TGACGTCATCGCAAAATCATGACATCATCAAACCAGAATCAACGGACGCA
CCACTGTCACCAATGAAATTAAAGCCTGAGTCAGCAGAAAAATTATCAAC
ATCCAGCCCTACCGCTTCTTCAACCAACACTAAACCTATTGCCAAAGTTG
TTCATTTTTCACCGAAAATCATACAAGTCGAGAAGCCAGTATTCACAGAT
AAACCATCTGCAAGGAGCACTCGCGCAGCAGCTAAAAATGCTGCAAAGAA
AAGTATGTTCAGTCCGCCCATTCCACCCGTCTCAACCGCCAACATTTACA
AAGAAGCGCCACGGCAACTCACACGAGTACCACGTGATACAAATATTCCT
CTTATTGTTTACAATCCACCTAAATCAAAAACAACATCAAGCCTCGCATC
ATCGGCCCCTTCCGTAATCCCGATTGTTCCGATTACCACAGCGCCCGGTA
ATGTTATCCTTCAAGCATCAATCTATCATGCAGGAAACCCACATCAGCCA
CCTACCCTCATCCCTGCGTCACAACTCAAGAAAATGgcaaaacaaacaac
aacaaaatcacGTGGAAAACAAGGTAGAGACAGGAAACCAATGATAGCGC
CCTTGCCGTACGTCACGCACGCTATGGTGTCCCCGCCATTTATCTCTGTA
CAACCTCAACCGCCAGCTCCACTCAAAATCAAGGAAGAACCACGTGACAC
AAACAACAATAACGACGAGCATCCATCTTTCTTGCAAGCAGATTTTCGAC
AATGGTCAGTTGAACAAGTCTACCAGCATTTCTTAAACTCAGATTGCTCG
AAGTATGCTGATATCTTCAGAGAACAGgaGATAGATGGAAAAGCCTTGCT
ACATCTTGACGAAATGAACATATCCAAACTTTTGAACGTCAAGATGGGAC
CTGCTATCAAATTATCAGCAATTATCAAGGAACTGAAAAACCCTTAAAGG
GACGGTTTCACTTGCTTTATTGTTAATATTGATGTGCCGGTTGTGATTTT
AAAACACCGAGCCGATGGTTGGCTTAGTCAGTCACTTTTAAAAAGACTAC
TAAGGATCACCCTTCTGTGAAgagtttctctttttttgaggaacattttg
aacaatatataGCGCGAGTCTCCAATGGGGACTGGGACAAAGAACCACGT
GACCGTAttcgattgttttgtttttaattagattttcatttttaaagaaa
caTACTTAAGAAATAAGTGAGCCTTTTTgggcttttttttttaatgtaaa
atTCTGTAAATAGTTTTGTACCTAGACATagtgtaaatatttttattccc
aaGATTTTTATACGGTGTATCTTTCATTAAGTTAATAAAATATAATCATT
CGAACAAAAATGTTCGTCGCATTGTTGTTTTTGgaacaatttttat Run BLAST on NCBI transcript from alignment at sc0000011:969997..973744+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001621 ID=TCONS_00001621|Name=TCONS_00001621|organism=Clytia hemisphaerica|type=transcript|length=3748bp|location=Sequence derived from alignment at sc0000011:969997..973744+ (Clytia hemisphaerica)
gTAAAAAATGCTTGTAGCGATTGTGACACATAATTagctttataattttt
tcaagtCCCACGAGACATCCCTCGAGAGAGAATTACAGTTTTGACTACAG
TAGTTTTATGTAACGTTGATTGAATTGTGATTGATTTGACATAAAGTTTT
CTTTGTCTGTGGAGCTGATAGTAGACTTGANTTGTGATTGATTTGACATA
AAGTTTTCTTTGTCTGTGGAGCTGATAGCAGACTTGAATTTTTtacagca
atattttttttgttaataatgGAAGAAACTCAACGCAAAAGAAGAAATGA
TTCTGCCACAGAAAGTAATGAAGCTTATGAGAAGAAACAGAGGGTGGAAC
AATTAATTGGTGCTTTGTCAAAACCAGCAAAGAAACTTTCAAGTAGTTCG
TCTATAGATTCGATTGATACTAAACTTTGTATTGaggtaaaacatttttc
ataatctgcgatacactttttttatataaggagcagtaaaattttgctga
ggctcggctgttcgNGTCTGcgatacatttttttatataagaagcagtaa
aattttgctgaggcttggctgttcttatttttttggcactttcagcctca
aattgttcttatcctgttcttacacgtttttattagaaaatctaaatttt
ttgaagcctttggatgttcttagctttttgagttctaagccttaaaatgt
tcttaacttgttcttaaaattttgaccagcgaaaccttatgttcttatat
agtttgttctttttaaaaaaacgtgtttttatAGGGtataattgaggtat
tttagacgttatacccaatttttaactccttattttttggcaattttgag
cctcattgttcttataaaagtaaaaaaagcaccgttatatatatttttta
taagaaaaattttgggTACCTTCTTTAGAGTTCCGAGCTACAGGCTAGCT
TGAGCGGGGGGTGGATATGTACTGACCTTGATGGTCGACAGAGGCGTGAT
GCTCGGTGCAGAAaatagaccctgtcagaaaCAAGCTTTTACCATAACTT
GGACCCTGTGGACAATTATTTTGATAGAGATAATCTGTACCTTAACAAGC
AAAGTGTGGTCTCTGTCAAATGCAAActtgatattttttctaaaacccAC
TGaattgaaaaatggaccctgttCAGCAGGACGTtccttacatgtttttt
ataagaataaactatataagaagataaggcttcgatggccaaaatattat
aaacaagttaagaacattttaagacattGTGGACCCCAAAAcaccgattt
cttaggaaaatggaaaaaaatactaaaaaactggcgaaaataagaacatg
ctaagaacatttttaggcttaaaattaaaaaagttaagaacatttcatag
cttcaaaaattttggatgtttttataaaaaaaaagtgtagtctTATTTTA
CATGGTGACCTCTCGGAGCTTGAATTTTGAATTAAGGAGATGAAATAatc
aattttttctaatttgaatGAATATGTTAACATACACACTAGGGATAGGT
AAAACAGAGAAATTTAGAAATTACACATGCGATATTTTgcaatcaaaaat
tattttgcttcGTCAAATCACAAAGCTTGTCTTTTCTCTCATTAAAAAGA
GCGCTCCATTTCAAATATAATTTGTAGATAATACGTTTGGGAATATCTTT
CACATTTTACTCTGACATTTGCTggtatattcaaatttgtatcagAGCAA
TTATTGAATTCTCAACGCAAATGATTTGTTAATTAGAGTAACAATAGAGA
AATGTATTCCACGGACCAGCCCTTTTGCTACTATCGAtgaatttccttat
ttttcaaTACGCTTTATCACTAGGGATCTGAGTAAAATTAGATtcttgtc
ttttctttttttatacctttttctAATTTAGAGAAGGTTTTTTTTCTGAT
ACGATTTCtcttatttttgaaaagaaatgcaTTTAAAATCCCTATGGATT
GACGTAATGACTACTCcagttttctaaaaaattattctaattacCCATAG
CAACCAGATGACGAGGAAGAAAATGTTGACGTTGTCACGTCTAGTCCGCC
ATCTCCCGTTCTTATGACGTCATCGCAAAATCATGACATCATCAAACCAG
AATCAACGGACGCACCACTGTCACCAATGAAATTAAAGCCTGAGTCAGCA
GAAAAATTATCAACATCCAGCCCTACCGCTTCTTCAACCAACACTAAACC
TATTGCCAAAGTTGTTCATTTTTCACCGAAAATCATACAAGTCGAGAAGC
CAGTATTCACAGATAAACCATCTGCAAGGAGCACTCGCGCAGCAGCTAAA
AATGCTGCAAAGAAAAGTATGTTCAGTCCGCCCATTCCACCCGTCTCAAC
CGCCAACATTTACAAAGAAGCGCCACGGCAACTCACACGAGTACCACGTG
ATACAAATATTCCTCTTATTGTTTACAATCCACCTAAATCAAAAACAACA
TCAAGCCTCGCATCATCGGCCCCTTCCGTAATCCCGATTGTTCCGATTAC
CACAGCGCCCGGTAATGTTATCCTTCAAGCATCAATCTATCATGCAGGAA
ACCCACATCAGCCACCTACCCTCATCCCTGCGTCACAACTCAAGAAAATG
gcaaaacaaacaacaacaaaatcacGTGGAAAACAAGGTAGAGACAGGAA
ACCAATGATAGCGCCCTTGCCGTACGTCACGCACGCTATGGTGTCCCCGC
CATTTATCTCTGTACAACCTCAACCGCCAGCTCCACTCAAAATCAAGGAA
GAACCACGTGACACAAACAACAATAACGACGAGCATCCATCTTTCTTGCA
AGCAGATTTTCGACAATGGTCAGTTGAACAAGTCTACCAGCATTTCTTAA
ACTCAGATTGCTCGAAGTATGCTGATATCTTCAGAGAACAGGTTAATAAT
AACTTAATATTATCATTTTAAGTCCAGTCTTTTTACCAGCAGTAAGTTCG
AAAGTAAATAATGGAAAATATATTGAAAGTAAACCTCCCTTCCTGGCTTT
TGAGTCTCCAATGAGTTAAGCTTTTCGTCAAAGAACTAGATTTATTTCTG
GTTAATAATTTTTATTCGGTCTCTCGacttattttcttaaattttaaaca
ctttttttttctgttttttttctttataggaGATAGATGGAAAAGCCTTG
CTACATCTTGACGAAATGAACATATCCAAACTTTTGAACGTCAAGATGGG
ACCTGCTATCAAATTATCAGCAATTATCAAGGAACTGAAAAACCCTTAAA
GGGACGGTTTCACTTGCTTTATTGTTAATATTGATGTGCCGGTTGTGATT
TTAAAACACCGAGCCGATGGTTGGCTTAGTCAGTCACTTTTAAAAAGACT
ACTAAGGATCACCCTTCTGTGAAgagtttctctttttttgaggaacattt
tgaacaatatataGCGCGAGTCTCCAATGGGGACTGGGACAAAGAACCAC
GTGACCGTAttcgattgttttgtttttaattagattttcatttttaaaga
aacaTACTTAAGAAATAAGTGAGCCTTTTTgggcttttttttttaatgta
aaatTCTGTAAATAGTTTTGTACCTAGACATagtgtaaatatttttattc
ccaaGATTTTTATACGGTGTATCTTTCATTAAGTTAATAAAATATAATCA
TTCGAACAAAAATGTTCGTCGCATTGTTGTTTTTGgaacaatttttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001621-exon-sc0000011-1491911889:969997..970432 | TCONS_00001621-exon-sc0000011-1491911889:969997..970432 | Clytia hemisphaerica | exon |
| TCONS_00001621-exon-sc0000011-1510915933:969997..970432 | TCONS_00001621-exon-sc0000011-1510915933:969997..970432 | Clytia hemisphaerica | exon |
| TCONS_00001621-exon-sc0000011-1575043694:969997..970432 | TCONS_00001621-exon-sc0000011-1575043694:969997..970432 | Clytia hemisphaerica | exon |
| TCONS_00001621-exon-sc0000011-1491911889:972047..972937 | TCONS_00001621-exon-sc0000011-1491911889:972047..972937 | Clytia hemisphaerica | exon |
| TCONS_00001621-exon-sc0000011-1510915933:972047..972937 | TCONS_00001621-exon-sc0000011-1510915933:972047..972937 | Clytia hemisphaerica | exon |
| TCONS_00001621-exon-sc0000011-1575043694:972047..972937 | TCONS_00001621-exon-sc0000011-1575043694:972047..972937 | Clytia hemisphaerica | exon |
| TCONS_00001621-exon-sc0000011-1491911889:973176..973744 | TCONS_00001621-exon-sc0000011-1491911889:973176..973744 | Clytia hemisphaerica | exon |
| TCONS_00001621-exon-sc0000011-1510915933:973176..973744 | TCONS_00001621-exon-sc0000011-1510915933:973176..973744 | Clytia hemisphaerica | exon |
| TCONS_00001621-exon-sc0000011-1575043694:973176..973744 | TCONS_00001621-exon-sc0000011-1575043694:973176..973744 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:969997..973744 + |
Blast
The following BLAST results are available for this feature:
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