TCONS_00001606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001606
Unique NameTCONS_00001606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001606 ID=TCONS_00001606|Name=TCONS_00001606|organism=Clytia hemisphaerica|type=transcript|length=604bp
CCTCATGATTCGACTAGCTGTGGTTTCACACACTACAACAAATTCCTCAT
CGGGAGATAACGCGATTCCATTTGGGAAAAACAACCCATCCATCAGTACT
TCACTTTGTTTTGTCTCTATATCATAACTAATTAAACGTCCTTGACCACC
GCCCTCCAAGATCATGTATGGAAAATCACGCCTCTGCCATTTCCAACTTG
AGTCTGTAAAATAGACTTTATTGCTACTGGAGATGGTTAAGTGGTTGACA
AATTTAAATGGAACATCGTTGACTCCTTTGGCAGCAGAAATTAATGTTGT
AAGTTCGCCAGCATTTAGGTTGTATTTTAGTAAACCAAGGTAAGCGTCAC
AAATGATGAGATTTTCCTGGTCACGATCAAATTGTAAACCTAAAGGTCGT
CCACATTTGTCCTCTGCTGTTATATTGCCTGAAATAAATACAAGGAATGG
GATTGGAGACAAAGTCCAGTTTAGAAGATGTTTTATTGTAAATGACTATG
AAACATAAACATAAGATAACAGCATGAATGAATATAGAGCTTTCTTATGT
TTTGTAACAGAGAAGCCagtaaacacccctgtgtcacagacccgctggaa
cTTT
Run BLAST on NCBI

transcript from alignment at sc0000011:816557..817160+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001606 ID=TCONS_00001606|Name=TCONS_00001606|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at sc0000011:816557..817160+ (Clytia hemisphaerica)
CCTCATGATTCGACTAGCTGTGGTTTCACACACTACAACAAATTCCTCAT
CGGGAGATAACGCGATTCCATTTGGGAAAAACAACCCATCCATCAGTACT
TCACTTTGTTTTGTCTCTATATCATAACTAATTAAACGTCCTTGACCACC
GCCCTCCAAGATCATGTATGGAAAATCACGCCTCTGCCATTTCCAACTTG
AGTCTGTAAAATAGACTTTATTGCTACTGGAGATGGTTAAGTGGTTGACA
AATTTAAATGGAACATCGTTGACTCCTTTGGCAGCAGAAATTAATGTTGT
AAGTTCGCCAGCATTTAGGTTGTATTTTAGTAAACCAAGGTAAGCGTCAC
AAATGATGAGATTTTCCTGGTCACGATCAAATTGTAAACCTAAAGGTCGT
CCACATTTGTCCTCTGCTGTTATATTGCCTGAAATAAATACAAGGAATGG
GATTGGAGACAAAGTCCAGTTTAGAAGATGTTTTATTGTAAATGACTATG
AAACATAAACATAAGATAACAGCATGAATGAATATAGAGCTTTCTTATGT
TTTGTAACAGAGAAGCCagtaaacacccctgtgtcacagacccgctggaa
cTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000837XLOC_000837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001606-exon-sc0000011-1491911889:816557..817160TCONS_00001606-exon-sc0000011-1491911889:816557..817160Clytia hemisphaericaexon
TCONS_00001606-exon-sc0000011-1510915933:816557..817160TCONS_00001606-exon-sc0000011-1510915933:816557..817160Clytia hemisphaericaexon
TCONS_00001606-exon-sc0000011-1575043694:816557..817160TCONS_00001606-exon-sc0000011-1575043694:816557..817160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:816557..817160 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.12916	3.93832	1.10219	0.349544	3.97695	2.21245	11.6007	9.74165	3.33785	2.87879	0	1.52691	1.77269	1.23661	2.76282	4.88835	9.5175	11.5189	3.55565	4.61019	6.40069	4.16688	9.65264	8.24059	4.16559	2.85175	3.8789	3.92612	16.7847	15.0799
Blast
[Close]
BLAST of TCONS_00001606 vs. Swiss-Prot (Human)
Match: APMAP (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.887e-33
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = -2 
Query:    1 EDKCGRPLGLQFDRDQENLIICDAYLGLLKYNLNAGELTTLISAAKGVNDVPFKFVNHLTISS-SNKVYFTDSSWKWQRRDFPYMILEGGGQGRLISYDIETKQSEVLMDGLFFPNGIALSPDEEFVVVCETTASRIMR 414
            E  CGRPLG++   +   L + DAY GL + N    E+  L+S+   +      FVN LT++    K+YFTDSS KWQRRD+  +++EG   GRL+ YD  T++ +VL+D L FPNG+ LSP E+FV+V ETT +RI R
Sbjct:  146 EPVCGRPLGIRAGPNG-TLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRR 283
The following BLAST results are available for this feature:
BLAST of TCONS_00001606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APMAP3.887e-3346.04Adipocyte plasma membrane-associated protein OS=Ho... [more]
back to top