Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001606 ID=TCONS_00001606|Name=TCONS_00001606|organism=Clytia hemisphaerica|type=transcript|length=604bp
CCTCATGATTCGACTAGCTGTGGTTTCACACACTACAACAAATTCCTCAT
CGGGAGATAACGCGATTCCATTTGGGAAAAACAACCCATCCATCAGTACT
TCACTTTGTTTTGTCTCTATATCATAACTAATTAAACGTCCTTGACCACC
GCCCTCCAAGATCATGTATGGAAAATCACGCCTCTGCCATTTCCAACTTG
AGTCTGTAAAATAGACTTTATTGCTACTGGAGATGGTTAAGTGGTTGACA
AATTTAAATGGAACATCGTTGACTCCTTTGGCAGCAGAAATTAATGTTGT
AAGTTCGCCAGCATTTAGGTTGTATTTTAGTAAACCAAGGTAAGCGTCAC
AAATGATGAGATTTTCCTGGTCACGATCAAATTGTAAACCTAAAGGTCGT
CCACATTTGTCCTCTGCTGTTATATTGCCTGAAATAAATACAAGGAATGG
GATTGGAGACAAAGTCCAGTTTAGAAGATGTTTTATTGTAAATGACTATG
AAACATAAACATAAGATAACAGCATGAATGAATATAGAGCTTTCTTATGT
TTTGTAACAGAGAAGCCagtaaacacccctgtgtcacagacccgctggaa
cTTT Run BLAST on NCBI transcript from alignment at sc0000011:816557..817160+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001606 ID=TCONS_00001606|Name=TCONS_00001606|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at sc0000011:816557..817160+ (Clytia hemisphaerica)
CCTCATGATTCGACTAGCTGTGGTTTCACACACTACAACAAATTCCTCAT
CGGGAGATAACGCGATTCCATTTGGGAAAAACAACCCATCCATCAGTACT
TCACTTTGTTTTGTCTCTATATCATAACTAATTAAACGTCCTTGACCACC
GCCCTCCAAGATCATGTATGGAAAATCACGCCTCTGCCATTTCCAACTTG
AGTCTGTAAAATAGACTTTATTGCTACTGGAGATGGTTAAGTGGTTGACA
AATTTAAATGGAACATCGTTGACTCCTTTGGCAGCAGAAATTAATGTTGT
AAGTTCGCCAGCATTTAGGTTGTATTTTAGTAAACCAAGGTAAGCGTCAC
AAATGATGAGATTTTCCTGGTCACGATCAAATTGTAAACCTAAAGGTCGT
CCACATTTGTCCTCTGCTGTTATATTGCCTGAAATAAATACAAGGAATGG
GATTGGAGACAAAGTCCAGTTTAGAAGATGTTTTATTGTAAATGACTATG
AAACATAAACATAAGATAACAGCATGAATGAATATAGAGCTTTCTTATGT
TTTGTAACAGAGAAGCCagtaaacacccctgtgtcacagacccgctggaa
cTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001606-exon-sc0000011-1491911889:816557..817160 | TCONS_00001606-exon-sc0000011-1491911889:816557..817160 | Clytia hemisphaerica | exon |
| TCONS_00001606-exon-sc0000011-1510915933:816557..817160 | TCONS_00001606-exon-sc0000011-1510915933:816557..817160 | Clytia hemisphaerica | exon |
| TCONS_00001606-exon-sc0000011-1575043694:816557..817160 | TCONS_00001606-exon-sc0000011-1575043694:816557..817160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:816557..817160 + |
Blast
BLAST of TCONS_00001606 vs. Swiss-Prot (Human)
Match: APMAP (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 3.887e-33 Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = -2 Query: 1 EDKCGRPLGLQFDRDQENLIICDAYLGLLKYNLNAGELTTLISAAKGVNDVPFKFVNHLTISS-SNKVYFTDSSWKWQRRDFPYMILEGGGQGRLISYDIETKQSEVLMDGLFFPNGIALSPDEEFVVVCETTASRIMR 414
E CGRPLG++ + L + DAY GL + N E+ L+S+ + FVN LT++ K+YFTDSS KWQRRD+ +++EG GRL+ YD T++ +VL+D L FPNG+ LSP E+FV+V ETT +RI R
Sbjct: 146 EPVCGRPLGIRAGPNG-TLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRR 283
The following BLAST results are available for this feature:
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