TCONS_00001601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001601
Unique NameTCONS_00001601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001601 ID=TCONS_00001601|Name=TCONS_00001601|organism=Clytia hemisphaerica|type=transcript|length=1488bp
ATTTCTTTCAAGCGCAGAATATTCATTCTAGTTGAACGAAGACGGAAGAC
TAAACGCTGAACCAAACAACAGAGCATCCAAGAAATTAATTTAGGAATTA
ATTTTGGTAGTGGCTTTTCCCTTTGGGAATAAAGTTTTGTTGCAATGGGG
AGCGTTGTCAAAGAGAAAACGAAGAAacgaaaaaatattaagaaaggAAC
GAGCACGAAAAGCCAAGACTACGAAATCGACGATCTAATTCAAGAGGAGT
TGAAAGACGAAGAAATACGCAAACNCAACCAGCACGAAAAGCCAAGACTA
CGAAATCGACGATCTAATTCAAGAGGAGTTGAAAGACGAAGAAATACGCA
AACAAAGACAGAAAGAATTGGACGAAATCACACGTAACACTGCTTTAGAT
CTCGTAAACGAATTTATAGAGAACGAAACTAGAAGTTCGTTCAAACGTAA
CACAAAAAAGTCGACCGCAAAAGCGTCGAACGTCGATACAGAAAAACCAG
TTAAaccgaaaacaaagaaaaagaaagcgaaGAAAGAGACAATCTTAGAG
ATGGAGGACCACGAGACCAAGATCGATTTATTGCACCTAGATGAAGAGAA
CACCCAGTCACAAACGTCTGTGAAAAGCGCAaccaagaagaaaacaaaac
ccaaacagactaaaaacaaacagaaatgGGAAACATTTGAGGAGAATTCA
ACAGAGAAATCAGCTTCAAATAAAGAAGGTACCGAGAAAACgacaaagaa
aacgaaaaagcCAAAGGTTAATAAGATCTCACCAACTCCGCCTCCCGATA
ACGGTCAGCAGGATCGTAAGAAACGGATAAGCAAAGATACCAATGATTTG
AAATTACAGAGTTTCTCTGAGGATACCGATTTAGAGGTTGATAGTTCATG
CTTGACCATGCTTCTTATGGCAATCTCACTTGAAAGTGAACTACCACCGA
AATTCTACGCAAAATTATTGAATAGTAAGCGATTTAAGGGAGCCTTAAAG
AACATGACTCTTGAAGAACGAGAATTAGTGCTTGCCATGATGAGTGATGT
GGAGCCTGAAGTTGATTATTTGCCGatcagaaatgaaattttcattgatA
GTTTCAAAGATCGTTTGACCGTCCCAACTTAAAAGATATGGAGAACTTCT
TACCATAAAAGTCTAGGGTAATAAGAGGTATCGAACAGTCAGTAAAACtg
aaattcttaaaaatgaaaagttcttctTCGCCGAAGAGACCATCAGATTG
TATATTGAAAGGTCAAATGTAAACTCTTGCGAATGCTTATTAAAATGATG
TGATACAGTTATGAGAATTCAAATACGGTATAATATGACTTTAGACTGga
ttttcaagttaaaaaaagGACGATAAAAGCAACGCAAACTGGCATAAAAC
CAAAACACCCTTAATATAATCGGTCTCGGACAAACGGTTTACTGGGATGC
AACAAAATCTCATTGTCATTTACGAATGGGatgttact
Run BLAST on NCBI

protein sequence of TCONS_00001601-protein

>TCONS_00001601-protein ID=TCONS_00001601-protein|Name=TCONS_00001601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MEDHETKIDLLHLDEENTQSQTSVKSATKKKTKPKQTKNKQKWETFEENS
TEKSASNKEGTEKTTKKTKKPKVNKISPTPPPDNGQQDRKKRISKDTNDL
KLQSFSEDTDLEVDSSCLTMLLMAISLESELPPKFYAKLLNSKRFKGALK
NMTLEERELVLAMMSDVEPEVDYLPIRNEIFIDSFKDRLTVPT
Run BLAST on NCBI

transcript from alignment at sc0000011:760741..767676+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001601 ID=TCONS_00001601|Name=TCONS_00001601|organism=Clytia hemisphaerica|type=transcript|length=6936bp|location=Sequence derived from alignment at sc0000011:760741..767676+ (Clytia hemisphaerica)
ATTTCTTTCAAGCGCAGAATATTCATTCTAGTTGAACGAAGACGGAAGAC TAAACGCTGAACCAAACAACAGAGCATCCAAGAAATTAATTTAGGAATTA ATTTTGGTAGTGGCTTTTCCCTTTGGGAATAAAGGTAAGtagctattttg aaaaaataaataagtagATATGTAATTAACACGAACTAATTTCGTGTTGG TTTAGTTTTaatttagactggagtcgtttataatgcatgtaataataata ataaacacaaataatgatacgggatttagtttgtataaacgactggaaga atccggtgttccagccttatagataccgggcctagctacgcagaaacttg NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttgtttggagtta gtgcacaaaggtttctagacgactaaaatttacttttttgctttatttct aatatgtctgaattagtcgtctagcttgctagactagtttTAATTTAAAT CCCTTCCATTAAAACCAtccgtggtgtccttgaaaactagcaaaaaaaat tcttgttttttttgcatcgtaatttcaaggccgttcaATACTTTTGTCTA CTTAAAAGGTATCTACAattatggacaaaatatttgagataaATGGGATT TCCCGACGAAATTTAAGacttaaaaacttaaatttaCTCGTACAAGGCTT ACCATATAGCCTAGAATCCACCAAACccttctaaaatcgaaatattcaat gaaagaaactggaagtgctaaaatagcaattctcgcccgaactttaaatt ctgaaaaacgttaaaatacactaaaactttcaatatattttgaccataaT TTTACTTGTATTCGAGTAATAAGGTATTCTCAAGTAGTTTGTGGCGAACA GACAATGACAGTAAACGGCAACGAATTTTGACATTTACGTAGATATCAGG TCAGGTACAATAGGATGTGAAATAACGCCACTAGGTTACTTCATTTAAGA ATGTGGTTTTAGTTTTGTATCCAATTGAATCTGCTAAATTGTTTGGGTAT GTTGGTTCATGGGTTGAATTGGTGCTTTTTGACCGATTTGAAGCGAGAAA TTGACCCAAGCAAACGGAGCTTTTTGTTCGGGGTGCGTTTGTCAATTTTG TACGTGGTTGTGTGGGTTAAAATATATCTGTGTTGGTTATGAAACTTTTT TGCATGCGTCGATAATCCCCACGCAATTAtgaactgaaaaaatgaaagaa gagaCTTACGAAATCGTTTATGTTGTAGCTTTTCTTTACAATACACCAAA TCCCATAAAATCATTCCAAATAGTCAATAATCATCGAATAAATCCCTAAA AAGAGAGGTTTGTAATATGTGATTATTAGCTTTGGATTGTGTTAGACGTA GAcaaggtgaaaaaaaatttcagtttaGCTTTTCAGAATTCTTAGGCCCA TCGATTTAGAACTAAAGGCCCTTTTCTAGGccactaaaatgaaaacatct TGAAGGTGAAAAATGGTAGTCTACTGTATCAGACCGCTCCGAGCTTTAGG CTAGGAAGGAGAGGAGGTTTAACGAACGGAGCGAGGGAGATATGGCGTAG CCTAGAAAAATGGTGGTTAATACGAGGAGTCGATTTTTTCCAGTGAAAAA CCCTGCCTGACTGGGCATTTGCAGATTCTGAGACTGGTAGGAGAATGATG TTTATTAAGTGGGCAGAATCCGTTGAAAAATCACGCAATGTAAAACAAGG TCCATTTCCGTGACATTTGAAATATGGCCGATATCCTATAGGTAcacaat aacttttttttatatgagctgaaagcaatgatagtaatatTTCAAAAcct gtaaaaatttgaaacatcGATCCTGATATTGCCAtggatttaaaaattgt ttcaatatttttagttgGATTTAACAAGAGTAGTTGACAAAGTTCAGACT TTTACAACACGGAAAGGTTGTACGCTTATTTCTAACAAGCCGAATCAAAC TAATGAAAGTGAAAGAGACGACAAAGTAATATAAATCGGAAAACGTCGGG ATAAAATTGTAGATAAAGTAAAGtaacatttcaaaaataattagcgaagt aaagaaaaatttgaaaatttgaaaaatcaaccttttttgtaagaacaggT TATCAAAAGAAATACAAACTGCCATTATTcctaaaaataatttatcaagT CCGTGAGCATTCAAACAAAAGACTTGATTCATTTGATACGAGCGGTAATA ATGTTGATAATTTCAACATCCTCTTTAAAAACAACACAACAAGCATTCTT ACTGGACAGTACacttttgaaatgaatttttctttcaaaaaaaatatgaa taaaaatagaTTCAAGAAAGGTGTAAATTGACCGAAAAGAGGacagattt ttataaaaaaatatggaaaaagaataaaatttcaaacttatatTTCATTT TGATCTTTTGTAAgacgaaattttgaataacgTTTGGTCGCACTCAAGGG TATGGACACCAGTCAGTAATAAAGGTAAAGGATACGATACAGTGGGTGCA TCTTGcaattcctgcattaataacacgcacgcgtaatttgtcgttctttt aaaccacttGTAGTTAATTCCCGGGATAAACAAACAGAAATGAATCGCTA AAGGTGATCCAATTattttcggtcggggttgtgaacggcaaaaatatgaa atttggcGTTCTTTTCtgtcgttttttataaaatttgtcgttttttttgt ctattttcggTAATGCAGGATTTGTAAGATAGAGCCTCTCATACGataag ttatttaaaaaaaatttatttcaaaatatcttttaaagATGCATAATTTA GCTGTCCTCGATCAATCAATTTTAACGTTTGATACACTAAAAACTAATTT AcgttattttatcaaaaaccgGTTGTGATTTGCTGAAGCATTAAAAGCAT GTGAAAACATGACAACCTCTTTAGAACCTGTCTTTTGAAGCATGTCTaat caatgtcaattgaataacAAACTTGGTCTGGAAGTCAggttattttgaat ttcaagattGAGACTTTTTTGCCTATActttttaatcacatgatcagaAT CCGCGTTAGAGCGTTAATTGTCGCAGTGAAAGGTAATGTGACATCGCCCA TTTAATTAGCCCGGGGTCCAGTTAAAGTTTTTTGATTGACTGAATAGCGC TAATAAGAGGCCCGGCGTAATTTGGCGGTAGCAAATACATGCACTAAatc cagtccctttttggaaaaacaaacaaacagaaaacGACCAATAGAccaaa tttttttcagatttttgaggtatttacatgtttttattatagtttcataa gttttgatggggttttagaatattattttattgatttgttgttttcttat aatttttgaaaacgaaagtgaaaaaaatcaagatggcgATATCCTCTAGT CCGGACTTCCTGAGCAGGTGGATATCTAGCCCGGGGTCctcttaaagctt tttttatagactggatggcgcaattaagtggcccggtagtatatggtaat atgcttttgcctaggcggactgtaaaacagtccgccagattttagttgtt tttggaaggtaaaaacagtatgtagcaatgtttttatacgagaataaggg attgcaaacctgttattgatgtttgtttctcatttttgattatatctttc aacttcgagtagttttattgttatttggatttttaacattttttttcaaa atggcgacctcgccaaatgctcctagtctacttcactggactcagcgtca taaaaaattgtcaaaaagcaaagttcagccaaaagtagactctagtctag tggATATCCAAATTGACAATGTTCAGATTGTTTAATTTAGCGTATCTTTC AAAGAGAAATTTTAGATCATTCATTCTGGATCTAAATGAGTTTTAGTTGT AGTGTGACTGGAAATTTCCAGGTGAGACAAACAGATGATTTGTGTTCAAA ACACGAAATTCAcgtgttttttcttcttcaatcttCAATAAATGAGCTTG AAAATTGGAAATTAGAAGTTTGTTCAAGATTTTCAAGTTGGAAATCACCT ATCTTAGTTGGTATAAGAGCATATATAAAGGAAAAATGATGGAACAAGAA CGACAGGGAGCACGAGATTTTGAAATCAGTATGTAACTTTCTTCTTCAAA AGTAGAACCTAAAATCATTCAAACTGCgggaaaatcttcattttcattct cATTTTTACTCTGGTGTTGATCAAAAGTAAATTAAGCTCCAACAAATTTA ATCAAGGAAGCTTCCAGAAAATAAAGTGACTTTTTTATTGGTTAAAATTG ATGTTGGCCATGAGAAACGCTTTGAAAAATGCCTCCTTTGTTTTAGAGCA ATTTATTTTCGTTTGGTTATATACTCTAGATTAGGCTtgagaaatagaaa aattaccttttttatAGGTATTGGCTAAACAAGTTCTAAGACATTTTAGG TTGATTATTTTATCATGCTGGATGAGAGAGCTTAGCATACCCGGTGGAaa aaccgtaaaagtggggaggctgaagactcaaatgggataaaattcgcact aggaatttgagaaaaatggttagaaaagaagattgttttgttgttgggAG ATTTTATTGTCGCTCTATTATATAGAATAAAAGCTTCGAAAATATTACAA AGTCTGCCAATCTTTGGAATTATCAATTAGTTTGAAAGGGCCTTCGGAGG TCAAATGACGTAGAATTTCGCCCACTCATATTAAGATTTGTCAACTGTTA AAAAGCTAGGCAAGAAGAAATCGATAAAATTATTAACATTGAAAGCAAAA AAAGGGAATCGATAGGGGGAAAGTAataattattcaatttttatgtttct atatttctattttcactCATCTTCAAGTGGCTAGTACAATAGGAATATAG ATTGAACAGTAACGAGTGATCTATTTTTTTCACAGCGAAATTATTTATGT GGCCACCAAGAGGTATTCGTTCGAAAAcagttttctatttttttaatatt ttcctacgttttttcttccttttttccttcAGTTTTGTTGCAATGGGGAG CGTTGTCAAAGAGAAAACGAAGAAacgaaaaaatattaagaaaggAACGA GCACGAAAAGCCAAGACTACGAAATCGACGATCTAATTCAAGAGGAGTTG AAAGACGAAGAAATACGCAAACNCAACCAGCACGAAAAGCCAAGACTACG AAATCGACGATCTAATTCAAGAGGAGTTGAAAGACGAAGAAATACGCAAA CAAAGACAGAAAGAATTGGACGAAATCACACGTAACACTGCTTTAGATCT CGTAAACGAATTTATAGAGAACGAAACTAGAAGTTCGTTCAAACGTAACA CAAAAAAGTCGACCGCAAAAGCGTCGAACGTCGATACAGAAAAACCAGTT AAaccgaaaacaaagaaaaagaaagcgaaGAAAGAGACAATCTTAGAGAT GGAGGACCACGAGACCAAGATCGATTTATTGCACCTAGATGAAGAGAACA CCCAGTCACAAACGTCTGTGAAAAGCGCAaccaagaagaaaacaaaaccc aaacagactaaaaacaaacagaaatgGGAAACATTTGAGGAGAATTCAAC AGAGAAATCAGCTTCAAATAAAGAAGGTACCGAGAAAACgacaaagaaaa cgaaaaagcCAAAGGTTAATAAGATCTCACCAACTCCGCCTCCCGATAAC GGTCAGCAGGATCGTAAGAAACGGATAAGCAAAGATACCAATGATTTGAA ATTACAGAGTTTCTCTGAGGATACCGATTTAGAGGTTGATAGTTCATGCT TGACCATGCTTCTTATGGCAATCTCACTTGAAAGTGAACTACCACCGAAA TTCTACGCAAAATTATTGAATAGTAAGCGATTTAAGGGAGCCTTAAAGAA CATGACTCTTGAAGAACGAGAATTAGTGCTTGCCATGATGAGTGATGTGG AGCCTGAAGTTGATTATTTGCCGatcagaaatgaaattttcattgatAGT TTCAAAGATCGTTTGACCGTCCCAACTTAAAAGATATGGAGAACTTCTTA CCATAAAAGTCTAGGGTAATAAGAGGTATCGAACAGTCAGTAAAACtgaa attcttaaaaatgaaaagttcttctTCGCCGAAGAGACCATCAGATTGTA TATTGAAAGGTCAAATGTAAACTCTTGCGAATGCTTATTAAAATGATGTG ATACAGTTATGAGAATTCAAATACGGTATAATATGACTTTAGACTGgatt ttcaagttaaaaaaagGACGATAAAAGCAACGCAAACTGGCATAAAACCA AAACACCCTTAATATAATCGGTCTCGGACAAACGGTTTACTGGGATGCAA CAAAATCTCATTGTCATTTACGAATGGGatgttact

Coding sequence (CDS) from alignment at sc0000011:760741..767676+

>TCONS_00001601 ID=TCONS_00001601|Name=TCONS_00001601|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0000011:760741..767676+ (Clytia hemisphaerica)
ATGGAGGACCACGAGACCAAGATCGATTTATTGCACCTAGATGAAGAGAA
CACCCAGTCACAAACGTCTGTGAAAAGCGCAaccaagaagaaaacaaaac
ccaaacagactaaaaacaaacagaaatgGGAAACATTTGAGGAGAATTCA
ACAGAGAAATCAGCTTCAAATAAAGAAGGTACCGAGAAAACgacaaagaa
aacgaaaaagcCAAAGGTTAATAAGATCTCACCAACTCCGCCTCCCGATA
ACGGTCAGCAGGATCGTAAGAAACGGATAAGCAAAGATACCAATGATTTG
AAATTACAGAGTTTCTCTGAGGATACCGATTTAGAGGTTGATAGTTCATG
CTTGACCATGCTTCTTATGGCAATCTCACTTGAAAGTGAACTACCACCGA
AATTCTACGCAAAATTATTGAATAGTAAGCGATTTAAGGGAGCCTTAAAG
AACATGACTCTTGAAGAACGAGAATTAGTGCTTGCCATGATGAGTGATGT
GGAGCCTGAAGTTGATTATTTGCCGatcagaaatgaaattttcattgatA
GTTTCAAAGATCGTTTGACCGTCCCAACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000834XLOC_000834Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001601-proteinTCONS_00001601-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001601-exon-sc0000011-1491911889:760741..760874TCONS_00001601-exon-sc0000011-1491911889:760741..760874Clytia hemisphaericaexon
TCONS_00001601-exon-sc0000011-1510915933:760741..760874TCONS_00001601-exon-sc0000011-1510915933:760741..760874Clytia hemisphaericaexon
TCONS_00001601-exon-sc0000011-1575043694:760741..760874TCONS_00001601-exon-sc0000011-1575043694:760741..760874Clytia hemisphaericaexon
TCONS_00001601-exon-sc0000011-1491911889:766323..767676TCONS_00001601-exon-sc0000011-1491911889:766323..767676Clytia hemisphaericaexon
TCONS_00001601-exon-sc0000011-1510915933:766323..767676TCONS_00001601-exon-sc0000011-1510915933:766323..767676Clytia hemisphaericaexon
TCONS_00001601-exon-sc0000011-1575043694:766323..767676TCONS_00001601-exon-sc0000011-1575043694:766323..767676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:760741..767676 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 12.2349 14.2164 10.0747 3.92362 7.36298 4.0762 0 0.696562 0 0 0 0.718368 1.92915 1.01924 0.520428 0.585819 0.302981 0 2.07098 5.62784 6.27607e-07 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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