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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001593 ID=TCONS_00001593|Name=TCONS_00001593|organism=Clytia hemisphaerica|type=transcript|length=4033bpRun BLAST on NCBI protein sequence of TCONS_00001593-protein >TCONS_00001593-protein ID=TCONS_00001593-protein|Name=TCONS_00001593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=792bp MTVRKRANHTSNSESKDDNTKNEEATEKKTDFPKALTNGSASKVKENDNGRun BLAST on NCBI transcript from alignment at sc0000011:659514..690240+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001593 ID=TCONS_00001593|Name=TCONS_00001593|organism=Clytia hemisphaerica|type=transcript|length=30727bp|location=Sequence derived from alignment at sc0000011:659514..690240+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000011:659514..690240+ >TCONS_00001593 ID=TCONS_00001593|Name=TCONS_00001593|organism=Clytia hemisphaerica|type=CDS|length=49959bp|location=Sequence derived from alignment at sc0000011:659514..690240+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001593 vs. Swiss-Prot (Human)
Match: POMT2 (Protein O-mannosyl-transferase 2 OS=Homo sapiens GN=POMT2 PE=1 SV=2) HSP 1 Score: 621.698 bits (1602), Expect = 0.000e+0 Identity = 344/698 (49.28%), Postives = 462/698 (66.19%), Query Frame = 3
Query: 381 WFYMIFSVALF---TRFYTITLPKHVCWDETHFGKFANHYLNGTFFLDVHPPLGKMLLALAGWMTGYNGEFSFEKPGMEYGEHRYVGMRAFCALLGCFCVPLAYLIVWELTHNLPACILAASLILFDHGCITISQYILLDPILMFFIMMSVYSLLKFYSWRDCPFSFDWWGWMFVTGYFLACTFSVKWVGLFVILFAGMTTVQDLWDILGDLSNSLVDVGKHFIARAXXXXXXXXXXXXXXXAVHFQALPKXXXXXXXXXXXXXXTLEGNKLYKAVLPGELGYGAVVTLKNHKTAGTLLHSHQHLYPKEHPPEQQQITGYSHKDSNNDWQINKAHHLITEDDRL------EYVRDGDEVRLMHVQTRRNLHSHPEKAPISTNLHQVSGYGQDGNGDANDIWLIRITKNPGPDNRISTVKTIFQLVHRNTGCVLQETEKQLPKWGWEQKEMACNPNKFVTIVGSEWNIESNTHKKVPQVSVELLSPSFFESVYESHVVMAKTNNGFKPKEGEFTSQAWHWPINYRGQVFSG---GDERVYLLGNPIVWWLICGTYFLYVIVYVIQTLRWKRGYKFDATIYAEYTTMVSSCSWLFMGWALHYLPFYAMGRVLYFHHYFPAYLFSAMFSGILLEHVSRTVSY-MFSGERRKHVYYFCLATVLAIAISSFCMFRGLSYGMSGPMGNQPNQTMAAYRWLDTWD 2435
W+ ++ V L TRF+ + P H+CWDETHFGK ++Y+N TFF DVHPPLGKML+ LAG+++GY+G F F+KPG +Y H Y+GMR FCA LG + VP AYL V +L+ +L A +L A+L+ FD GC+T+SQYILLDPILMFFIM ++ S++K+ S D PFS WW W+ +TG LA VK+VGLF+IL G+ T+ DLW + GDLS SLV VGKH AR + LI+LP+ +Y FAVHF L KSGPGDGFFSS+FQ+ L GN L+ A +P L YG+V+T+KN + A LHSH+HLYP+ QQQ+T Y HKD NN W I K + T D L E+VR GD +RL H +T RNLHSH +AP++ +QV+GYG +G GD+ND W I + N NRI +++ + +H TGCVL + K LPKWGWEQ E+ C P T+ S WN+E + + K+P +S+++L PSF E + ESH+VM + N+G KPK+ EFTS+ WHWPINY+G FSG D RVYLLGNP+VWWL + LY++ I + +RG + A + ++ + +GW LHY PF+ MGRVLYFHHYFPA LFS+M +GIL + + R ++ + S + ++ + ++L SF +F L+YGM GP+ P MA RWLD+WD
Sbjct: 57 WWALLALVTLLSFATRFHRLDEPPHICWDETHFGKMGSYYINRTFFFDVHPPLGKMLIGLAGYLSGYDGTFLFQKPGDKYEHHSYMGMRGFCAFLGSWLVPFAYLTVLDLSKSLSAALLTAALLTFDTGCLTLSQYILLDPILMFFIMAAMLSMVKYNSCADRPFSAPWWFWLSLTGVSLAGALGVKFVGLFIILQVGLNTIADLWYLFGDLSLSLVTVGKHLTARVLCLIVLPLALYTATFAVHFMVLSKSGPGDGFFSSAFQARLSGNNLHNASIPEHLAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVTTYLHKDYNNLWIIKKHN---TNSDPLDPSFPVEFVRHGDIIRLEHKETSRNLHSHYHEAPMTRKHYQVTGYGINGTGDSNDFWRIEVV-NRKFGNRIKVLRSRIRFIHLVTGCVLGSSGKVLPKWGWEQLEVTCTPYLKETL-NSIWNVEDHINPKLPNISLDVLQPSFPEILLESHMVMIRGNSGLKPKDNEFTSKPWHWPINYQGLRFSGVNDTDFRVYLLGNPVVWWLNLLSIALYLLSGSIIAVAMQRGARLPAEVAGLSQVLLRGGGQVLLGWTLHYFPFFLMGRVLYFHHYFPAMLFSSMLTGILWDTLLRLCAWGLASWPLARGIHVAGILSLLLGTAYSFYLFHPLAYGMVGPLAQDPQSPMAGLRWLDSWD 749 The following BLAST results are available for this feature:
BLAST of TCONS_00001593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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