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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001590 ID=TCONS_00001590|Name=TCONS_00001590|organism=Clytia hemisphaerica|type=transcript|length=4079bpRun BLAST on NCBI protein sequence of TCONS_00001590-protein >TCONS_00001590-protein ID=TCONS_00001590-protein|Name=TCONS_00001590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1180bp MVASTDDTPDLLRIGEYVKQRWKIVKKVGGGGFGEIYQGHDTVTHEMVALRun BLAST on NCBI transcript from alignment at sc0000011:633542..645024+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001590 ID=TCONS_00001590|Name=TCONS_00001590|organism=Clytia hemisphaerica|type=transcript|length=11483bp|location=Sequence derived from alignment at sc0000011:633542..645024+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000011:633542..645024+ >TCONS_00001590 ID=TCONS_00001590|Name=TCONS_00001590|organism=Clytia hemisphaerica|type=CDS|length=42516bp|location=Sequence derived from alignment at sc0000011:633542..645024+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001590 vs. Swiss-Prot (Human)
Match: TTBK2 (Tau-tubulin kinase 2 OS=Homo sapiens GN=TTBK2 PE=1 SV=2) HSP 1 Score: 421.779 bits (1083), Expect = 5.905e-125 Identity = 214/335 (63.88%), Postives = 256/335 (76.42%), Query Frame = 3
Query: 135 DLLRIGEYVKQRWKIVKKVXXXXXXEIYQGHDTVTHEMVALKLESANTSKQVLKMEVAVLKKLQGRDHVCQFVACGRNDRFNYVVMSLVGQNLAELRRSQSRGAFSIGTMLRLGVQILNGIEAIHDCGFLHRDVKPSNFAMGNTKQTNRIVYMLDFGLARQYINNEGNVRAPRAVAGFRGTVRYAAITAHENKEMARRDDLWSVFYMLVEFAQGSLPWRKYKDKEEVGKFKKAYEHKQLLKHMPAEFKEFLDHIKALEYADKPDYDFLRQCCENALMKRGIRQTDPFDWEKXXXXXXXXXXXXXXXKYI---ATPQALKPDNALNNPSDLPRSNT 1130
D+L +G VK+RWK+++K+GGGGFGEIY D +T E VALK+ESA KQVLKMEVAVLKKLQG+DHVC+F+ CGRNDRFNYVVM L G+NLA+LRRSQSRG F+I T LRLG QIL IE+IH GFLHRD+KPSNFAMG T R YMLDFGLARQ+ N+ G+VR PRAVAGFRGTVRYA+I AH N+EM R DDLWS+FYMLVEF G LPWRK KDKE+VG K+ Y+H+ +LKH+P EF FLDHI +L+Y KPDY L +N++ G+ ++DPFDWEK+ DGSLTTTT+ST+ + TP A+ NA P DL R NT
Sbjct: 9 DILSVGILVKERWKVLRKIGGGGFGEIYDALDMLTRENVALKVESAQQPKQVLKMEVAVLKKLQGKDHVCRFIGCGRNDRFNYVVMQLQGRNLADLRRSQSRGTFTISTTLRLGRQILESIESIHSVGFLHRDIKPSNFAMGRFPSTCRKCYMLDFGLARQFTNSCGDVRPPRAVAGFRGTVRYASINAHRNREMGRHDDLWSLFYMLVEFVVGQLPWRKIKDKEQVGSIKERYDHRLMLKHLPPEFSIFLDHISSLDYFTKPDYQLLTSVFDNSIKTFGVIESDPFDWEKTGNDGSLTTTTTSTTPQLHTRLTPAAIGIANATPIPGDLLRENT 343 The following BLAST results are available for this feature:
BLAST of TCONS_00001590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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