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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001586 ID=TCONS_00001586|Name=TCONS_00001586|organism=Clytia hemisphaerica|type=transcript|length=1737bp
AATTCCCAGATTTCATGCACTGAGTCAATGTCTAAATTTTGGTACTTTCT
GAATAGAACTGAATAGAAATAGAATATCAGATTACATAATTCACTCATGG
ATAAATAGGAGAGTTGAAAAATTATCTAATCAGTTTCAAAGCTTCGAGCT
TGGTGGAAGGTGATAACAAATTCAACAGATTTCATAGGTTTTCTTATGTG
AAAATCTTGTGGAAAATGTGGAAATTATGTGGAACATCTTTAAAAACCTG
GTCAAATCCTGATGGTATATGGAGATAAATACAGGGATGATAATGATTGT
ACGAAGAGAAAAGATACAGACTGAAATACAGgtgAAGTGGTTCATTATCA
TAACGATTCAAAACCGAAGAGTTGGTGTGCAGTAAGATAGATACTCAAAA
CAGTATACCATTGCTCTACACCATCAAAGCCTATTACACATGATTTGCAT
GTAGTTCTATTGATGCAAATTTGATTTGGGTACAGTAGGAGTCTCACAAC
TTCTTCAGGGTTTGGCGCCCCTGCCCAACCAAGAAacttaaataaaagaa
tttaattatttttttgtttaagttcCTTGGGCTAACTGAGCcaaaaaatt
tgactttgtcTTAATTGATGAATAAATCAATGTTTAAAAGGAATGATCAA
CAAGATGGCTGATGGGTTGGAATGTAGATGCacgagaaaaatcaaaacca
agATCAAACCCAATCTGTCAGAAGAGATTACGTGGTTTCTAGATGACGGG
ATTTCAATTATGAGAGGCAAGATTCGGGAGACCCGGCTCTTTGATGCTAT
ACGCACAAAAGACTAACCGCTTTACAAGCCCTTTTCTGAATATCAATGAC
TTTCAAGATGAAATATATATGCCGCAAAtttaaataatgtgttaaattga
gaaataagtTTTATTTGGTATGGGTATGGGATGGACACATGTCATTTGTT
TAATTGCTGCTGGAtacttcaaaaacttttgagcAACTGACCGCTGGTTT
AATCTGGTTTCTTCAAATAGCTCCATCTTGTTCAAGAAGAAGACTAACAA
CTAGCTTTTaagagaaaactttttatgTAAGATTTTAAAACCAATgtaaa
tttatttattaatgaagacaaagtcaaaaaaaattctcttaaaattataa
aaatttgtctGGAAAGTTTTATGGTTTCCCAGAGATTTTATATTTAGATA
tgactttcaatttcaattttcccctatttttcaatttttgacatacAATT
TTCTATCCAAcaaagacaaatgaaattttcagggaagacttaaaatttaa
tttttacccttggtgaaaattatacatttgtatgttcatttaaaatgact
ttaTGACAATTTCGCTGACTTACGTAAATTTTTCATTGTTCACAGATTTT
GATAGTTATAAATTTTCCCTTATGGAACAAGAAACCAAGGTACGCTTCGT
TTTACCCTCTCATCAAAATggcattattttttcatttcataggtTAAGTT
TTGTTCCAAGGTCAATATTTGATAGATTCTGGCTAGTTCCAACCAAGCCA
TTTCTTAATGTCAATTGCGACTacaaaaaaagacttttgaatCATCAATG
GTGCAGAAATGAACCGATGTTATTACCTTTTGTACATAAAATCCTTTGGT
TTTCAGTTCAAGTGTTTTGCAAAAAGGTAAAGAAGCAGAACAGAGCTTGT
AGAATATAATATGATCAATTAAATAATGGAAATGAAA Run BLAST on NCBI transcript from alignment at sc0000011:524564..526496+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001586 ID=TCONS_00001586|Name=TCONS_00001586|organism=Clytia hemisphaerica|type=transcript|length=1933bp|location=Sequence derived from alignment at sc0000011:524564..526496+ (Clytia hemisphaerica)
AATTCCCAGATTTCATGCACTGAGTCAATGTCTAAATTTTGGTACTTTCT
GAATAGAACTGAATAGAAATAGAATATCAGATTACATAATTCACTCATGG
ATAAATAGGAGAGTTGAAAAATTATCTAATCAGTTTCAAAGCTTCGAGCT
TGGTGGAAGGTGATAACAAATTCAACAGATTTCATAGGTTTTCTTATGTG
AAAATCTTGTGGAAAATGTGGAAATTATGTGGAACATCTTTAAAAACCTG
GTCAAATCCTGATGGTATATGGAGATAAATACAGGGATGATAATGATTGT
ACGAAGAGAAAAGATACAGACTGAAATACAGGTATGATAATATGAAGACA
TACAAACTGGACATCGCTAACATAATGAAGGTActagatatttcaaaata
atgattttctaaaaacttttgattttctttacacaaaaaatggatcctaa
taaaaaaacaattttgtgtATTACATGATATTTCAAGATACAGTAATTCT
CAAAACTCtctacattttcatttttaggtgAAGTGGTTCATTATCATAAC
GATTCAAAACCGAAGAGTTGGTGTGCAGTAAGATAGATACTCAAAACAGT
ATACCATTGCTCTACACCATCAAAGCCTATTACACATGATTTGCATGTAG
TTCTATTGATGCAAATTTGATTTGGGTACAGTAGGAGTCTCACAACTTCT
TCAGGGTTTGGCGCCCCTGCCCAACCAAGAAacttaaataaaagaattta
attatttttttgtttaagttcCTTGGGCTAACTGAGCcaaaaaatttgac
tttgtcTTAATTGATGAATAAATCAATGTTTAAAAGGAATGATCAACAAG
ATGGCTGATGGGTTGGAATGTAGATGCacgagaaaaatcaaaaccaagAT
CAAACCCAATCTGTCAGAAGAGATTACGTGGTTTCTAGATGACGGGATTT
CAATTATGAGAGGCAAGATTCGGGAGACCCGGCTCTTTGATGCTATACGC
ACAAAAGACTAACCGCTTTACAAGCCCTTTTCTGAATATCAATGACTTTC
AAGATGAAATATATATGCCGCAAAtttaaataatgtgttaaattgagaaa
taagtTTTATTTGGTATGGGTATGGGATGGACACATGTCATTTGTTTAAT
TGCTGCTGGAtacttcaaaaacttttgagcAACTGACCGCTGGTTTAATC
TGGTTTCTTCAAATAGCTCCATCTTGTTCAAGAAGAAGACTAACAACTAG
CTTTTaagagaaaactttttatgTAAGATTTTAAAACCAATgtaaattta
tttattaatgaagacaaagtcaaaaaaaattctcttaaaattataaaaat
ttgtctGGAAAGTTTTATGGTTTCCCAGAGATTTTATATTTAGATAtgac
tttcaatttcaattttcccctatttttcaatttttgacatacAATTTTCT
ATCCAAcaaagacaaatgaaattttcagggaagacttaaaatttaatttt
tacccttggtgaaaattatacatttgtatgttcatttaaaatgactttaT
GACAATTTCGCTGACTTACGTAAATTTTTCATTGTTCACAGATTTTGATA
GTTATAAATTTTCCCTTATGGAACAAGAAACCAAGGTACGCTTCGTTTTA
CCCTCTCATCAAAATggcattattttttcatttcataggtTAAGTTTTGT
TCCAAGGTCAATATTTGATAGATTCTGGCTAGTTCCAACCAAGCCATTTC
TTAATGTCAATTGCGACTacaaaaaaagacttttgaatCATCAATGGTGC
AGAAATGAACCGATGTTATTACCTTTTGTACATAAAATCCTTTGGTTTTC
AGTTCAAGTGTTTTGCAAAAAGGTAAAGAAGCAGAACAGAGCTTGTAGAA
TATAATATGATCAATTAAATAATGGAAATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001586-exon-sc0000011-1491911889:524564..524894 | TCONS_00001586-exon-sc0000011-1491911889:524564..524894 | Clytia hemisphaerica | exon |
| TCONS_00001586-exon-sc0000011-1510915933:524564..524894 | TCONS_00001586-exon-sc0000011-1510915933:524564..524894 | Clytia hemisphaerica | exon |
| TCONS_00001586-exon-sc0000011-1575043694:524564..524894 | TCONS_00001586-exon-sc0000011-1575043694:524564..524894 | Clytia hemisphaerica | exon |
| TCONS_00001586-exon-sc0000011-1491911889:525091..526496 | TCONS_00001586-exon-sc0000011-1491911889:525091..526496 | Clytia hemisphaerica | exon |
| TCONS_00001586-exon-sc0000011-1510915933:525091..526496 | TCONS_00001586-exon-sc0000011-1510915933:525091..526496 | Clytia hemisphaerica | exon |
| TCONS_00001586-exon-sc0000011-1575043694:525091..526496 | TCONS_00001586-exon-sc0000011-1575043694:525091..526496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:524564..526496 + |
Blast
The following BLAST results are available for this feature:
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