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TCONS_00001586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001586
Unique NameTCONS_00001586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001586 ID=TCONS_00001586|Name=TCONS_00001586|organism=Clytia hemisphaerica|type=transcript|length=1737bp
AATTCCCAGATTTCATGCACTGAGTCAATGTCTAAATTTTGGTACTTTCT
GAATAGAACTGAATAGAAATAGAATATCAGATTACATAATTCACTCATGG
ATAAATAGGAGAGTTGAAAAATTATCTAATCAGTTTCAAAGCTTCGAGCT
TGGTGGAAGGTGATAACAAATTCAACAGATTTCATAGGTTTTCTTATGTG
AAAATCTTGTGGAAAATGTGGAAATTATGTGGAACATCTTTAAAAACCTG
GTCAAATCCTGATGGTATATGGAGATAAATACAGGGATGATAATGATTGT
ACGAAGAGAAAAGATACAGACTGAAATACAGgtgAAGTGGTTCATTATCA
TAACGATTCAAAACCGAAGAGTTGGTGTGCAGTAAGATAGATACTCAAAA
CAGTATACCATTGCTCTACACCATCAAAGCCTATTACACATGATTTGCAT
GTAGTTCTATTGATGCAAATTTGATTTGGGTACAGTAGGAGTCTCACAAC
TTCTTCAGGGTTTGGCGCCCCTGCCCAACCAAGAAacttaaataaaagaa
tttaattatttttttgtttaagttcCTTGGGCTAACTGAGCcaaaaaatt
tgactttgtcTTAATTGATGAATAAATCAATGTTTAAAAGGAATGATCAA
CAAGATGGCTGATGGGTTGGAATGTAGATGCacgagaaaaatcaaaacca
agATCAAACCCAATCTGTCAGAAGAGATTACGTGGTTTCTAGATGACGGG
ATTTCAATTATGAGAGGCAAGATTCGGGAGACCCGGCTCTTTGATGCTAT
ACGCACAAAAGACTAACCGCTTTACAAGCCCTTTTCTGAATATCAATGAC
TTTCAAGATGAAATATATATGCCGCAAAtttaaataatgtgttaaattga
gaaataagtTTTATTTGGTATGGGTATGGGATGGACACATGTCATTTGTT
TAATTGCTGCTGGAtacttcaaaaacttttgagcAACTGACCGCTGGTTT
AATCTGGTTTCTTCAAATAGCTCCATCTTGTTCAAGAAGAAGACTAACAA
CTAGCTTTTaagagaaaactttttatgTAAGATTTTAAAACCAATgtaaa
tttatttattaatgaagacaaagtcaaaaaaaattctcttaaaattataa
aaatttgtctGGAAAGTTTTATGGTTTCCCAGAGATTTTATATTTAGATA
tgactttcaatttcaattttcccctatttttcaatttttgacatacAATT
TTCTATCCAAcaaagacaaatgaaattttcagggaagacttaaaatttaa
tttttacccttggtgaaaattatacatttgtatgttcatttaaaatgact
ttaTGACAATTTCGCTGACTTACGTAAATTTTTCATTGTTCACAGATTTT
GATAGTTATAAATTTTCCCTTATGGAACAAGAAACCAAGGTACGCTTCGT
TTTACCCTCTCATCAAAATggcattattttttcatttcataggtTAAGTT
TTGTTCCAAGGTCAATATTTGATAGATTCTGGCTAGTTCCAACCAAGCCA
TTTCTTAATGTCAATTGCGACTacaaaaaaagacttttgaatCATCAATG
GTGCAGAAATGAACCGATGTTATTACCTTTTGTACATAAAATCCTTTGGT
TTTCAGTTCAAGTGTTTTGCAAAAAGGTAAAGAAGCAGAACAGAGCTTGT
AGAATATAATATGATCAATTAAATAATGGAAATGAAA
Run BLAST on NCBI

transcript from alignment at sc0000011:524564..526496+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001586 ID=TCONS_00001586|Name=TCONS_00001586|organism=Clytia hemisphaerica|type=transcript|length=1933bp|location=Sequence derived from alignment at sc0000011:524564..526496+ (Clytia hemisphaerica)
AATTCCCAGATTTCATGCACTGAGTCAATGTCTAAATTTTGGTACTTTCT GAATAGAACTGAATAGAAATAGAATATCAGATTACATAATTCACTCATGG ATAAATAGGAGAGTTGAAAAATTATCTAATCAGTTTCAAAGCTTCGAGCT TGGTGGAAGGTGATAACAAATTCAACAGATTTCATAGGTTTTCTTATGTG AAAATCTTGTGGAAAATGTGGAAATTATGTGGAACATCTTTAAAAACCTG GTCAAATCCTGATGGTATATGGAGATAAATACAGGGATGATAATGATTGT ACGAAGAGAAAAGATACAGACTGAAATACAGGTATGATAATATGAAGACA TACAAACTGGACATCGCTAACATAATGAAGGTActagatatttcaaaata atgattttctaaaaacttttgattttctttacacaaaaaatggatcctaa taaaaaaacaattttgtgtATTACATGATATTTCAAGATACAGTAATTCT CAAAACTCtctacattttcatttttaggtgAAGTGGTTCATTATCATAAC GATTCAAAACCGAAGAGTTGGTGTGCAGTAAGATAGATACTCAAAACAGT ATACCATTGCTCTACACCATCAAAGCCTATTACACATGATTTGCATGTAG TTCTATTGATGCAAATTTGATTTGGGTACAGTAGGAGTCTCACAACTTCT TCAGGGTTTGGCGCCCCTGCCCAACCAAGAAacttaaataaaagaattta attatttttttgtttaagttcCTTGGGCTAACTGAGCcaaaaaatttgac tttgtcTTAATTGATGAATAAATCAATGTTTAAAAGGAATGATCAACAAG ATGGCTGATGGGTTGGAATGTAGATGCacgagaaaaatcaaaaccaagAT CAAACCCAATCTGTCAGAAGAGATTACGTGGTTTCTAGATGACGGGATTT CAATTATGAGAGGCAAGATTCGGGAGACCCGGCTCTTTGATGCTATACGC ACAAAAGACTAACCGCTTTACAAGCCCTTTTCTGAATATCAATGACTTTC AAGATGAAATATATATGCCGCAAAtttaaataatgtgttaaattgagaaa taagtTTTATTTGGTATGGGTATGGGATGGACACATGTCATTTGTTTAAT TGCTGCTGGAtacttcaaaaacttttgagcAACTGACCGCTGGTTTAATC TGGTTTCTTCAAATAGCTCCATCTTGTTCAAGAAGAAGACTAACAACTAG CTTTTaagagaaaactttttatgTAAGATTTTAAAACCAATgtaaattta tttattaatgaagacaaagtcaaaaaaaattctcttaaaattataaaaat ttgtctGGAAAGTTTTATGGTTTCCCAGAGATTTTATATTTAGATAtgac tttcaatttcaattttcccctatttttcaatttttgacatacAATTTTCT ATCCAAcaaagacaaatgaaattttcagggaagacttaaaatttaatttt tacccttggtgaaaattatacatttgtatgttcatttaaaatgactttaT GACAATTTCGCTGACTTACGTAAATTTTTCATTGTTCACAGATTTTGATA GTTATAAATTTTCCCTTATGGAACAAGAAACCAAGGTACGCTTCGTTTTA CCCTCTCATCAAAATggcattattttttcatttcataggtTAAGTTTTGT TCCAAGGTCAATATTTGATAGATTCTGGCTAGTTCCAACCAAGCCATTTC TTAATGTCAATTGCGACTacaaaaaaagacttttgaatCATCAATGGTGC AGAAATGAACCGATGTTATTACCTTTTGTACATAAAATCCTTTGGTTTTC AGTTCAAGTGTTTTGCAAAAAGGTAAAGAAGCAGAACAGAGCTTGTAGAA TATAATATGATCAATTAAATAATGGAAATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000828XLOC_000828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001586-exon-sc0000011-1491911889:524564..524894TCONS_00001586-exon-sc0000011-1491911889:524564..524894Clytia hemisphaericaexon
TCONS_00001586-exon-sc0000011-1510915933:524564..524894TCONS_00001586-exon-sc0000011-1510915933:524564..524894Clytia hemisphaericaexon
TCONS_00001586-exon-sc0000011-1575043694:524564..524894TCONS_00001586-exon-sc0000011-1575043694:524564..524894Clytia hemisphaericaexon
TCONS_00001586-exon-sc0000011-1491911889:525091..526496TCONS_00001586-exon-sc0000011-1491911889:525091..526496Clytia hemisphaericaexon
TCONS_00001586-exon-sc0000011-1510915933:525091..526496TCONS_00001586-exon-sc0000011-1510915933:525091..526496Clytia hemisphaericaexon
TCONS_00001586-exon-sc0000011-1575043694:525091..526496TCONS_00001586-exon-sc0000011-1575043694:525091..526496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:524564..526496 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.416305 0 0 0.401018 0 0 0.964244 0 0.529071 3.23043 0 0.717641 3.40764 3.37231 3.86521 3.77578 0 0.276536 5.48272 15.9534 1.37783 3.01594 2.45424 6.24538 21.0213 33.0815 4.93196 5.80477 0.39306 2.0141
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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