TCONS_00001578 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001578
Unique Name	TCONS_00001578
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	467

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000011:307286..316968+

transcript sequence

>TCONS_00001578 ID=TCONS_00001578|Name=TCONS_00001578|organism=Clytia hemisphaerica|type=transcript|length=467bp
GTCGAACGAAAGAAAATGTGCCAGAAAAGCCAAAATCCTGattaatttct
tttgtaaaagctACTAGATGAGTATAAATAATGCAAGAGGATTTCGCGGT
TTTGTTAGCCGccataatatgaaaatattttatacaGTCATAACAATGTC
AACAGTTACAAACTTAATCATGCTGAAGAAGAAACATGACGATGAAAACC
CTATATTGCCATtgGATAAAGACGAACTTGCTTCTGGAGAGGTTTGGGTG
AAAGGATGGAATCAATGGATGGAAGATTTCAATAGATTAAAGAATTTTGT
TCTTGGTGGACCTTCAGATTGAACATAATGTGATGATAACCATTGGTGCA
ATCTCATGTGATCTTTCTCCTTCTCCATTTAATATAGGAGTATGATATTA
TGCTGAAGAGAAAATTCTATATTTTCATACATCAATTAGcagtttcaaat
aaaataaaatagattgg

Run BLAST on NCBI

transcript from alignment at sc0000011:307286..316968+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001578 ID=TCONS_00001578|Name=TCONS_00001578|organism=Clytia hemisphaerica|type=transcript|length=9683bp|location=Sequence derived from alignment at sc0000011:307286..316968+ (Clytia hemisphaerica)
GTCGAACGAAAGAAAATGTGCCAGAAAAGCCAAAATCCTGattaatttct
tttgtaaaagctgTAAGTAAGTTTTCGCTGGTAAGTTTGTAGACCTGACT
TTCAATTGTGTCGAAATTTGTTCTCTCAACAAGCTGTATTATTGCTCCAA
TATGTGAGCTGCAAAAAACTGTGTGTTTTGTTTAAACAGTTAGTTAGAGT
TACATCAACAACAGATCAacatgccaaaaacattttgttcaatcatcttc
acttcaagataggccaccatagaacgAATTTCCTTTTATAggtgaaccat
attcatgtcgTGGCTTTCagcattagtcaaaaaagtcattaaaattgttT
AACCTctgcaaaaaatcccgacgatgAGAGTGCGCACCATttaagttgaa
gttggtttgatattctacgtttgacgtttgatattcgattgatattcgtt
tgatattctcaaatttgcgttttgaagtttttgtgactacttttggaact
ggaaactattggaagccatcaataatagagtttattctcaagcagttagt
cacactaggaaatctagcttttagaaaaaacaacatcagtcatctacagg
atatatttcaacaacaaggatgagagttacctgaatcaagtttgcaagac
aatattaattaaaacttgaaagttggaaacaaaataaaacgtgcaNttgc
ggtgcatttttttgcttgagagtcaagtaaacgatatagcgcttttgcag
cattaatctttgatacgcattttggcgggacgctagtgtggctaactgtc
AAGGGTAGGGTGCGCACTCATCGGATTTTTGGCGCGGAACGaagaagaat
ttacaaaaatgaacttcaaggcattagtacttaccgtgagaggtcctaaa
gccgacagcccagcttaattccgacaccccaaataactgttatgaaaaaa
aattctatgtttacaaacattccctctccaagttNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttaaatcatccaaat
ctgttcattcttttttttaaatcaatcaggaattatcagggaaacaagta
aaaaaaactgcatcaaggtatctattttctttccaaagatatNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNaaattctcgacccacattgaaa
caaatggctgtcgctattgagctggttcatcttttcaatcgcggtttttt
tagtaaacccagggtaagattaggctacaaccTATCACAacctgctttat
ttgaaaatctacaggccgtctggaatttcgaaaaataagaagaaattttt
taacaagattgcggattttttcatttaagcaccattcaccatctgaaagc
tgaggatttcagctttctagtggtgaaatttggataactttggaactact
taaccaattttaacaaatggcccctcatttttctcacgaaggtaaggact
ttcaaataaaattacagtagtttggttttcaaaatttgaggggaaaattt
tggcctgtccaccctaacAATGTTTTCCTTTAGtaagattgaccattttg
ttgttttggatTTGAGCGAAATTTctggagcccaacttgtcattttggcc
gaaatgaggtttaacggttacaaatttttagagggagcacgctgtgacgg
agagcgctgaaattttgcacacacacccttgagaataaactctattggct
tcaaatgttttccagttccaaagataaccgctctcccccacaggagccca
acttgtcatttcggccgaaatgaggtttaacggttacaaatttttagagg
gagcacgctgcgacagagagcgctgaaattttgcacacacacccttgaga
ataaactctattggcttttccaatagtttccagttccaaagataacagct
ctcccccacaggagcccaacttgtcatttcggctgaaatgaggtttgaca
gttacaaatttttagagggagcacactgcgacggagagcgctgaaatttt
gcacagacactcttgagaataaactctattggctagcttccaatagtttc
caattccaaagataaccccTCTCCCCCACGGTCAccctcccccacaggag
cccaacatgtcatttcggccgaaatgaggtttgacgattacaaattttta
gagggagcacactacgacggagagcgctgaaattttgcacagacaccctt
gaTAGGGTGGACAggacaaaattttcccctcaattttaaaaaaccaaact
aattttatttgaaagtccttacctttgtgagaaaaatgaggggtcattta
tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtggtt
aagtattcccaaagttattccattttcaaaacacaaaaaaatcacctttt
caaagaatcgcctccttacaccacgccagcaagaaataattttcagaacc
aaaatcgcgccaaaaatggcggatgaaatctagtcttccgtgtggcgggg
tgtggggagttttgccgGTGCGGTCTAAAAATcagcccgatgactgttaa
actttagcctatcgctaatgagctggaaatgatagctaaaaacaaatttt
accaatgaaaagctgaaacccttagctttccaacgatatatgatagccct
gataaaaatttcaggaaagtgccgaaaaatcgaaatttcttcttttttct
cgatttaaagacagcccgtagattatcgaaaaggctaccacgtgacatac
taaagtactatctttcccgcgagtctataactaatccagctcaatagcga
tagctatttgaaaaatggtggtcaaggtAGACGGTGGTGCCACAAATTCC
GAGTTGCCATTTTTTTACCTTGATGTCTAATAAATGGTATACCAGCCATA
TTgaaccaattctaataaatgacccctcatttttctcacaaaggtaagga
ctttcaaagaaaaattagtttggtttctaaaaattgagggggAAATCTTT
GCCTGTTCACCCTATCAGTGGTATGTATTTAACAGTTACATCAacatgcc
aaaaacattttgttcaaccacctttaCTTCAAGGATAGACCAccatagaa
tgatagaatgaacttccttttacaGGATGAAccattcatgtggctttcag
ccttgaactccatcacagagcctatttgagatattacTAACTAGCccgga
gaaaaattttaaacctttattatttgaatgcatgcctttttaatataata
ctcaaatataaaaaaattaaaaaattttaacttgatcaTTAGTTAGGGTG
GACatgccaaaattttcccctcaatttttagaaaccaaactaattttatt
tgaaaatcctTACCTTTgtaagaaaaatgaggggtcatttattagaattg
gttaagtattcccaaagttattcaattttctaaacacaaaaaaatcacct
tttcaaagaatcgcctccttacaccacgccagcaagaaataattttcgga
agcaccaaaatcgcgccaaaaatggcggatgaaatctagtcttccgtgtg
gcggaGTGTTGGGaggtgcggtctgaaaatcggcccgatgactgttaaac
tttagcttatctctaatgagctggaaatgatagctaaaaacaaatttcac
cactagaaagctgaaatcctcagctttcagatggtgtaaggtgcttaatt
aaaaaaatctgcaatcttgttgaaaaatcgcaatttcttttatttttcga
aaattccagaCGGACTGcagatttttaaataaatcgcaatatgatagatt
gtagcctaatcttaccctggtttataaaaaaaaccgtattgaaaagatga
accagctctaTAGCTTCAGCCATTTGTTTCCATGTGGGTcaagaattttc
cggtgccgtggtcagcgctaagtcgtgttttcaccttgacgtcgaaaaac
atcaatatctttggaaagaaaatagatacctggatgcagttttttttact
tgttttcattttttcagttttttgttcattttcatttgtttatctttttt
gcaactgtttgcaatgtcagctttttccataaattatgcgcgcatagaaa
aatatcgaaaaccccgcgaaaattctgctcagtgactgggcgcgtattGG
CCAATTAGACAAATATCCCTGCAGAagagttagttggaccagaccgtaaa
ccagagacaaaattataaaaaactagatggtgaaatagtttacggtctgg
atatccaggctacaatGGAACTAAATCAAACTCCATCAAATGATTTAATT
TCAATCAAGATAAATGAACCTAAtcaaacactcacaatttttgaagcaaa
gtATTAAAAATTGGATAATTTTCGGACCTAGAAAAAAACGTTAGTAATGG
GGGgacttgataagttctatctatcaattaactaaaaatcgattcacttg
AAAACTGTAGGaaattcgaagggcaaattttttgtcaattctacacccta
ttagtagcatcaggggggggggggcagggtNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGGGGGGGCagggtccaggataccaaccAAGGGC
CCAACAacctgacttttcgagatttgaaagtagtagacaccaccaccccc
taaatCAGTATCGATACGAACTTGAAAATCccgttttttctgaaaaaggg
ggaaCCACCCCCCCTAAATTGGCAATAAATAAAAATGCAAGAAGTTATGT
GCATAGGATACTGCATACAAGGGACGCTAAACAAAATCTGtggatatttt
taatcaaagaacattcctcttattaatcacttatattatgtaccacactt
tagactcctgaaaatgaaaacaagtttttttcattctaacacaacgtaaa
ttaagtttcttgcactaaattggcaaaatgtatcaaattcataaaactag
tTGATAAACTAGACTAGATAAAAAACTCATTGTATTAGGCACGCCTAGAG
TCTTTGTAATAGCCTATATGATGAACGTTATGtacagaaaaattttatca
cgactaaaaaagctctaagatctgctaagacttgatacagtttgttcaac
tctagttttgaatgaattttggttgattgaaaggattgagagcagcaaaa
gttataataaaaataaaaatggcggatgaaatctagtcttccgtgtggcg
gaGTGTTGGGAGTTTTGccggtgcggtctgaaaatcggcccgatgactgt
taaactttagcttatcgctaatgagctggaaatgatagctaaaaacaaat
ttcaccactagNgcccgatgactgttaaactttagcttatcgctaatgag
ctggaaatgatagctaaaaacaaatttcatcaCTAGAAagctagacggtg
aaatagtttacggtctggatatccaggctagttttacttttgaattttct
ttcaaaaaatgttaaatagtTAAGAGAGGAAGGAGCAATTTGTATGTTGT
ATCTTGTATGTATATACTGCAAGCATGagaatttcaagtaatttttttta
gtaaccCTTTTAATTTAATTCACCCCTTCCTGGTATCTTTAGAAAATGTT
ACGTAATTTGATCTGGAAAAACCAACAATTATTCTTGAGGCCATCACAAT
CCCAATTATTGAAGCCTATTTTCAATTTACACACAACATGTATAAAAAGT
GGAACTCATGATTATGAAGCGGTAGATGTCTTGTTAAATGCAAAGCGACA
TAAAGAAGCAACAGGTAATGAATCGATTCTCAACCAAGCAGCATCGCGAT
CTGGAGCTGTTGTTCGATGGAAGAAAGTGGAGGGTGAAATGCTTCTGGAT
GAAGACCCAGTACTAGTTGTTGGTCGCCCATTTCAAATTAAAGCTGCAAC
TGATGTTTTGTTGAATGGGGTTGTGGAAGATACAGAAAATGTAGATAGCC
AGGATGAGCGTTTAGTATGGCATGGCTATAAACGTAATTTTAAAGGACAA
TTTCCCCCTGAAAAACCAAGAAAGACTTGTATCCGTAATAATGGAAATAG
AGTATCAGGAAATCCATGTCCACTTTGCCAGATTAAATTGAAGTCAAGCT
ATAATGTACATTTTACTGACGTACAGCTACTTGAGCAGTTTATTTGCCCG
CACACTGCTGAAATTCTTTCACCCAAGGTGACAGGTATCTGTAAGAAACA
ACACCTTCAAGTTGAAGCAGCTATTAAGAAAGCTCGAAATTTTGGTTATT
TACCTTTTACATTGCCACTACATTCAAAGGAACAAGGAAAACATATACCA
GCCGGTATACCaacagataaaaaaatcaaagtgaaaatgcactgaaatta
GTATTGTTAATCAGATTTTGTATACTTAccatgttttattttttgattca
tATTTTAATTAGATAAATCTTAAAATAAGCCAAAAAGCTTTTTATTCTGT
TTCATTTCCTCCAAATTGCTCgatcttttaaagtaaaatcgaaatttatt
tgaatgaattttggttgTTGTTTGTCTTCTATATCTCCAGagttgaattt
ttcatttttgtttttatttctgacTCATGTTCATTTGTGTTTATTTTAGA
CTAGATGAGTATAAATAATGCAAGAGGATTTCGCGGTTTTGTTAGCCGcc
ataatatgaaaatattttatacaGTCATAACAATGTCAACAGTTACAAAC
TTAATCATGCTGAAGAAGAAACATGACGATGAAAACCCTATATTGCCATG
TAAGTATATAATTAGTCTCAAAAGAACTTACACTTTGAGTGTATTACACC
TGCATGCTTTATTATCAAaatgaatatatgttttatttttattctctGCA
GGTTTTTACTTACAAGGATAAACATATCAAACAACACGAGACATACACAG
AATCTCTCGGCTTTCTTCACTAtttaccttattacatgaatattaGGAGA
CGTGTAATTAACACGAATGGAAAATATTCGTTTTCGATAAAAACCCTGTT
TATTTCTGAAGGCTTATTCTAAAGGTTAAACCTGCTCATTCGTGTTAATT
TGATGCTGTGttaattttgttgtttatttcGTTTCAGTTAAATACTTCAA
TACATATATATTACTTATGTAATAaggtatttcatttttttctatttcaa
aattttcagtgGATAAAGACGAACTTGCTTCTGGAGAGGTTTGGGTGAAA
GGATGGAATCAATGGATGGAAGATTTCAATAGATTAAAGGTCTTTATTCt
catatttctgacattaaaataatttttcttagcAATTTAGTGTACCTATT
TATCTACAGTTAGAAGTTACTGCATTACTGCTACAAGTTATAATTATAAC
ACAAAAACGATCTTTATTTTCAGTTGAAATATTGCTTACTACTTCGGATC
AAATGTTGCTTACAAAAACATTACAATGACATGTTTCAAGATAAAATCAT
TGCACTGTGATGTTGGAACTTTCGTAAAAAAGACCTTCTTTTTCAGAAAC
CAGCATTGTTAGATACTCAGTTCTTTCATcaccaatttttttatgaatta
tcTTTTAGAATTTTGTTCTTGGTGGACCTTCAGATTGAACATAATGTGAT
GATAACCATTGGTGCAATCTCATGTGATCTTTCTCCTTCTCCATTTAATA
TAGGAGTATGATATTATGCTGAAGAGAAAATTCTATATTTTCATACATCA
ATTAGcagtttcaaataaaataaaatagattgg

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000825	XLOC_000825	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001578-exon-sc0000011-1491911889:307286..307347	TCONS_00001578-exon-sc0000011-1491911889:307286..307347	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1510915933:307286..307347	TCONS_00001578-exon-sc0000011-1510915933:307286..307347	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1575043694:307286..307347	TCONS_00001578-exon-sc0000011-1575043694:307286..307347	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1491911889:315835..315984	TCONS_00001578-exon-sc0000011-1491911889:315835..315984	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1510915933:315835..315984	TCONS_00001578-exon-sc0000011-1510915933:315835..315984	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1575043694:315835..315984	TCONS_00001578-exon-sc0000011-1575043694:315835..315984	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1491911889:316395..316474	TCONS_00001578-exon-sc0000011-1491911889:316395..316474	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1510915933:316395..316474	TCONS_00001578-exon-sc0000011-1510915933:316395..316474	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1575043694:316395..316474	TCONS_00001578-exon-sc0000011-1575043694:316395..316474	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1491911889:316794..316968	TCONS_00001578-exon-sc0000011-1491911889:316794..316968	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1510915933:316794..316968	TCONS_00001578-exon-sc0000011-1510915933:316794..316968	Clytia hemisphaerica	exon
TCONS_00001578-exon-sc0000011-1575043694:316794..316968	TCONS_00001578-exon-sc0000011-1575043694:316794..316968	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000011	supercontig	sc0000011:307286..316968 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.1614	28.7835	18.0066	14.5438	24.73	18.1876	16.5736	17.7014	14.5677	12.4318	10.1701	10.6548	8.38702	9.59286	8.25237	7.57706	18.8538	17.6484	7.5101	6.4765	12.9457	10.9433	25.0608	20.1817	6.82287	13.7443	8.73225	6.7574	10.0927	16.012

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001578 vs. Swiss-Prot (Human)

BLAST of TCONS_00001578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00001578 (transcript) - C. hemisphaerica