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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001558 ID=TCONS_00001558|Name=TCONS_00001558|organism=Clytia hemisphaerica|type=transcript|length=2276bp
TAGTTGAATTTAGTGACAGTTATCTTTTAATAAAGTTACAAGctattttt
ttgagaaaagaaaTTAAGTTAAGAGAAGTAAAATTCAACAATTACTTTCA
ACAACTGTCTAAATGTCATAATCTCTTTTGGCTAAGGTTAGGATGGGGAA
ATAATGGGTATTTGCTTTTTTGATGATAAACCTCAATAGTTAAAGATATT
ATATAGATATTATCATCATAATCCAAAGCAGGAACTTGTAATTGTAGGAT
TTCAGTTTTGTCTGGTGTTTCTGACAGGAAAATTATGTAATAAAATTCAG
GTTATCTTGACTTTAATATTTGAGGAATTTGACTCCTGGAATTTGTCTAg
tgaaactgaaaaatttaataaaacaaTATTTTCCCTTTAGAATTTCAGTA
AACTAAATAATAAAATGCAGACCATCAAATGCGTGGTCGTTGGTGATGGT
GCCGTAGGAAAAACCTGTTTACTGATTTCTTATACAACAAATAAATTCCC
CAGTGAATATGTACCGACAGTATTTGACAACTATGCTGTAACGGTCATGA
TAGGAGGAGAACCATATACGTTAGGTCTCTTCGATACAGCTGGTCAAGAA
GATTACGATCGTCTCAGGCCGTTATCATACCCACAAACAGATGTTTTCTT
AGTCTGCTTCTCTGTTGTCGCCCCTGCATCATTCGAAAACGTAAAAGAAA
AGtgGGTTCCAGAAATTACACATCATTGTCCTAAAACACCATTTTTACTA
GTCGGTACACAAGTCGATTTACGAGATGATGCCGCCATCGTTGAAAAACT
CGCCAAAACGAAACAAAAGCCAATCTCTTTCGAACAAGGAGAAAAATTAG
CACGAGAATTGAAAGCAGTAAAATATGTCGAATGCTCCGCTTTAACGCAA
AAAGGATTAAAGAACGTTTTTGACGAAGCCATTTTGGCTGCATTGGAGCC
CCCAGAGcaaccaaagaaaaagaaatgtgtTTTACTCTAACTttggttaa
aaaattaattttttgttgaaacGACCTTAATATAAAAATTCCACTCGCTT
CCGTCGATCAATAATGCACACTGCGCTTATCGATAGAGAGAATCTGCCAG
TGGAATGAATTGTACAGCTTTGCTTATATGCCAAGAGAGGTGAATTCATC
ATAACATAAAAGTGTGGAATACCTTTCAAAGGTTTTGCGAGGGAAACTGT
TCATTGTATCGTTAAAAACCAACATCAAAATAAACCTCTATTTtatagtt
taaaaaaaagtttagaaacataaAATTAAATGAATTAAAATATTGTTACC
CAGGTTTTTTCTATAAATTAAGGGCTGGGTTTATGTACTATATCTGGATA
TGCAACTTTTTTTGTATGTATTCTTATGTACCTCTTTCGAAAAAATAGTA
ATTTTTAAGACTTCTCATAATGAATGCCCTGATTGAGCTCAAttcaactt
ttaatttttttgtttatttattgtgCTGATTTTTTTCCTTCGTTGCTTTT
CAGGGGATATTCATTTTTGTTTCAATCACTCAAAcgattttttaaatatg
gcCAAAGTCTTCAGTTTTTATTCTTTGCTCAATCAGGGTGTACACCGAGA
AACTATGTCACATTTTTTATAGTTGATTTCTCATGAATGAATTATGGGAC
CAACCCCCTtctatattttgttttaaaagaaaactaaaTTGGCCACACGA
TTTGTACTTATCTATCTGATTTTATACTTGTGAAAATATCAACTGTCTAG
AACTTTAAACACATCTTGCTCAGATTTGTTCTTCTTTTAAGAAATATCAG
GGCAGAGTTCCAAATTATATACTTGTCAACTTATCAAAACTATTCAAATC
GTTTATCTTGTATAATGTTCGTCAGCAAATAGATTGTTAGTTTTGACTCT
TTTTGACTATTTTGATTTTGTAGGATTATAAACTATATTTTTTTCGTCCC
CTATGTGTTgtctgtatttttgaaaaacaatgttCAATATacagacaatt
taaaaaatttgcctGTAATTTACTTCAATACTTCATGTCCTCCTTTATCT
CCATCCCCTTCTTGTCCGAAGGAACTTTACAATTCTTAATAACCGAGTTC
CAAAAGCGAAGTGGAtcatgtggtgtgtttggggcattaaggctcttacg
aacCTGTCTCCATAGCGGCTTttttattagagggatttttagagtgtctc
ttattttgctagcaacttgcgaattgaggtggagtctagatcgcttcgca
acccttatacaatacggctagtagTG Run BLAST on NCBI transcript from alignment at sc0000011:15287..18431+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001558 ID=TCONS_00001558|Name=TCONS_00001558|organism=Clytia hemisphaerica|type=transcript|length=3145bp|location=Sequence derived from alignment at sc0000011:15287..18431+ (Clytia hemisphaerica)
TAGTTGAATTTAGTGACAGTTATCTTTTAATAAAGTTACAAGctattttt
ttgagaaaagaaaTTAAGTTAAGAGAAGTAAAATTCAACAATTACTTTCA
ACAACTGTCTAAATGTCATAATCTCTTTTGGCTAAGGTTAGGATGGGGAA
ATAATGGGTATTTGCTTTTTTGATGATAAACCTCAATAGTTAAAGATATT
ATATAGATATTATCATCATAATCCAAAGCAGGAACTTGTAATTGTAGGAT
TTCAGTTTTGTCTGGTGTTTCTGACAGGAAAATTATGTAATAAAATTCAG
GTTATCTTGACTTTAATATTTGAGGAATTTGACTCCTGGAATTTGTCTAg
tgaaactgaaaaatttaataaaacaaTATTTTCCCTTTAGAATTTCAGTA
AACTAAATAATAAAATGCAGACCATCAAATGCGTGGTCGTTGGTGATGGT
GCCGTAGGAAAAACCTGTTTACTGATTTCTTATACAACAAATAAATTCCC
CAGTGAATATGTACCGACAGTAAGTAAATATTTATTCTTTTCTATACTGG
ACAATAGAGTATACCTTTGGAAATGCAGCTTTTATGCATACAAGgctttc
aattaaaaatgattttgtttttattttttctcaagGTATTTGACAACTAT
GCTGTAACGGTCATGATAGGAGGAGAACCATATACGTTAGGTCTCTTCGA
TACAGCTGGTATGTATATTTGAATCATGTTTTTATTAGTatatcaaaaaa
gattttttgtccaCCTTTTCCATTTTCCAGATTGATTGAGAACTTGGACT
AAAAAGCTTTTGACATCTTTCTTTGTGTTAAAGCAGTATCGTAATTCTTC
CATCTGTCGAAAGAAATCCATCCAGTTGAGATTTTTCACTTAGATTTCCG
TCCCAATAGCACACGAATCTAAAAGTAGTAACAAATCTGCATAACTATTT
GTTTGTATAACTTGCGATCTCGTCCTCCTTTGCGTTAACTGCTCTTGCAC
ATTAGTCAATTACAATATTAGAGGTAATAACTTTCATGGTTTTACAATCA
TTTCAAAATGAACTGTGGGATTGGAACTCTACAAATTTctagttgaaata
attatgacgtGTTAGATACGAAGGGCTATTGCAAGCCTTTGAAGCTTTCG
TCTAATTTTGAACCTTCTATCCAGAAAACCAAAATAGTTGCGAAACTGGT
ACTTGATTTAAAATCCTATTTATCACTTTGTTATTACCAGGTCAAGAAGA
TTACGATCGTCTCAGGCCGTTATCATACCCACAAACAGATGTTTTCTTAG
TCTGCTTCTCTGTTGTCGCCCCTGCATCATTCGAAAACGTAAAAGAAAAG
GTACGTTTTACTAGTTTAAGATCTATTGTGATATTTTTAACTTATGATCC
TCAAATGTTTCTGTGTTGTTCCATAATGAGCAACCaagaaagaatttcaa
aaattgaataatcGCTCTAACAGGCCATTGGTTACTGCCCACTTAGTGTG
AAATAGTTTTAAATTCTTGATAATTCCCAAAAAGTAATTGATTTTATAac
aagtttttcttttcttttcagtgGGTTCCAGAAATTACACATCATTGTCC
TAAAACACCATTTTTACTAGTCGGTACACAAGTCGATTTACGAGATGATG
CCGCCATCGTTGAAAAACTCGCCAAAACGAAACAAAAGCCAATCTCTTTC
GAACAAGGAGAAAAATTAGCACGAGAATTGAAAGCAGTAAAATATGTCGA
ATGCTCCGCTTTAACGCAAAAAGGATTAAAGAACGTTTTTGACGAAGCCA
TTTTGGCTGCATTGGAGCCCCCAGAGcaaccaaagaaaaagaaatgtgtT
TTACTCTAACTttggttaaaaaattaattttttgttgaaacGACCTTAAT
ATAAAAATTCCACTCGCTTCCGTCGATCAATAATGCACACTGCGCTTATC
GATAGAGAGAATCTGCCAGTGGAATGAATTGTACAGCTTTGCTTATATGC
CAAGAGAGGTGAATTCATCATAACATAAAAGTGTGGAATACCTTTCAAAG
GTTTTGCGAGGGAAACTGTTCATTGTATCGTTAAAAACCAACATCAAAAT
AAACCTCTATTTtatagtttaaaaaaaagtttagaaacataaAATTAAAT
GAATTAAAATATTGTTACCCAGGTTTTTTCTATAAATTAAGGGCTGGGTT
TATGTACTATATCTGGATATGCAACTTTTTTTGTATGTATTCTTATGTAC
CTCTTTCGAAAAAATAGTAATTTTTAAGACTTCTCATAATGAATGCCCTG
ATTGAGCTCAAttcaacttttaatttttttgtttatttattgtgCTGATT
TTTTTCCTTCGTTGCTTTTCAGGGGATATTCATTTTTGTTTCAATCACTC
AAAcgattttttaaatatggcCAAAGTCTTCAGTTTTTATTCTTTGCTCA
ATCAGGGTGTACACCGAGAAACTATGTCACATTTTTTATAGTTGATTTCT
CATGAATGAATTATGGGACCAACCCCCTtctatattttgttttaaaagaa
aactaaaTTGGCCACACGATTTGTACTTATCTATCTGATTTTATACTTGT
GAAAATATCAACTGTCTAGAACTTTAAACACATCTTGCTCAGATTTGTTC
TTCTTTTAAGAAATATCAGGGCAGAGTTCCAAATTATATACTTGTCAACT
TATCAAAACTATTCAAATCGTTTATCTTGTATAATGTTCGTCAGCAAATA
GATTGTTAGTTTTGACTCTTTTTGACTATTTTGATTTTGTAGGATTATAA
ACTATATTTTTTTCGTCCCCTATGTGTTgtctgtatttttgaaaaacaat
gttCAATATacagacaatttaaaaaatttgcctGTAATTTACTTCAATAC
TTCATGTCCTCCTTTATCTCCATCCCCTTCTTGTCCGAAGGAACTTTACA
ATTCTTAATAACCGAGTTCCAAAAGCGAAGTGGAtcatgtggtgtgtttg
gggcattaaggctcttacgaacCTGTCTCCATAGCGGCTTttttattaga
gggatttttagagtgtctcttattttgctagcaacttgcgaattgaggtg
gagtctagatcgcttcgcaacccttatacaatacggctagtagTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001558-exon-sc0000011-1491911889:15287..15805 | TCONS_00001558-exon-sc0000011-1491911889:15287..15805 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1510915933:15287..15805 | TCONS_00001558-exon-sc0000011-1510915933:15287..15805 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1575043694:15287..15805 | TCONS_00001558-exon-sc0000011-1575043694:15287..15805 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1491911889:15922..15994 | TCONS_00001558-exon-sc0000011-1491911889:15922..15994 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1510915933:15922..15994 | TCONS_00001558-exon-sc0000011-1510915933:15922..15994 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1575043694:15922..15994 | TCONS_00001558-exon-sc0000011-1575043694:15922..15994 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1491911889:16527..16636 | TCONS_00001558-exon-sc0000011-1491911889:16527..16636 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1510915933:16527..16636 | TCONS_00001558-exon-sc0000011-1510915933:16527..16636 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1575043694:16527..16636 | TCONS_00001558-exon-sc0000011-1575043694:16527..16636 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1491911889:16858..18431 | TCONS_00001558-exon-sc0000011-1491911889:16858..18431 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1510915933:16858..18431 | TCONS_00001558-exon-sc0000011-1510915933:16858..18431 | Clytia hemisphaerica | exon |
| TCONS_00001558-exon-sc0000011-1575043694:16858..18431 | TCONS_00001558-exon-sc0000011-1575043694:16858..18431 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:15287..18431 + |
Blast
BLAST of TCONS_00001558 vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2) HSP 1 Score: 351.673 bits (901), Expect = 7.077e-116 Identity = 168/181 (92.82%), Postives = 175/181 (96.69%), Query Frame = 1
Query: 415 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVAPASFENVKEKWVPEITHHCPKTPFLLVGTQVDLRDDAAIVEKLAKTKQKPISFEQGEKLARELKAVKYVECSALTQKGLKNVFDEAILAALEPPE 957
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV+P+SFENVKEKWVPEITHHCPKTPFLLVGTQ+DLRDD + +EKLAK KQKPI+ E EKLAR+LKAVKYVECSALTQKGLKNVFDEAILAALEPPE
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
The following BLAST results are available for this feature:
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