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TCONS_00001556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001556
Unique NameTCONS_00001556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001556 ID=TCONS_00001556|Name=TCONS_00001556|organism=Clytia hemisphaerica|type=transcript|length=258bp
ATCGAACTTATTGACTCTCCCTCAAATTCGAATCATCAAAACATGGTTGA
AAGAAACAAATACTTTTGGATCATACAAGACATGTTGGGATACCTCGATG
AAAGACCTGAGCAGAACCAACTTTTTTGATGAGTGTGGAAATAATTCACC
GCGTTTCGATCCTAGGATTAAAACATGGTGTACACAATCActgttttcaa
attatttgaagACAACCGAATTTTAGGTGGTTTCGCCGATCTGCCTTGGA
TAAGTAAG
Run BLAST on NCBI

transcript from alignment at sc0000010:1129477..1129734

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001556 ID=TCONS_00001556|Name=TCONS_00001556|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at sc0000010:1129477..1129734 (Clytia hemisphaerica)
CTTACTTATCCAAGGCAGATCGGCGAAACCACCTAAAATTCGGTTGTctt caaataatttgaaaacagTGATTGTGTACACCATGTTTTAATCCTAGGAT CGAAACGCGGTGAATTATTTCCACACTCATCAAAAAAGTTGGTTCTGCTC AGGTCTTTCATCGAGGTATCCCAACATGTCTTGTATGATCCAAAAGTATT TGTTTCTTTCAACCATGTTTTGATGATTCGAATTTGAGGGAGAGTCAATA AGTTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000815XLOC_000815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001556-exon-sc0000010-1491911889:1129477..1129734TCONS_00001556-exon-sc0000010-1491911889:1129477..1129734Clytia hemisphaericaexon
TCONS_00001556-exon-sc0000010-1510915933:1129477..1129734TCONS_00001556-exon-sc0000010-1510915933:1129477..1129734Clytia hemisphaericaexon
TCONS_00001556-exon-sc0000010-1575043694:1129477..1129734TCONS_00001556-exon-sc0000010-1575043694:1129477..1129734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1129477..1129734 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 1.62919 3.99223 12.7158 7.54248 4.95813 9.90247 15.8932 0 0 0 0 0 0 0 0 0 0.705492 27.6123 27.2374 0 1.9808 0.751185 1.53068
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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